HEADER HYDROLASE 11-SEP-12 4H1Y TITLE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): CRYSTAL FORM II (OPEN) IN COMPLEX TITLE 2 WITH PSB11552 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-NUCLEOTIDASE; COMPND 3 CHAIN: P; COMPND 4 FRAGMENT: UNP RESIDUES 27-549; COMPND 5 SYNONYM: 5'-NT, ECTO-5'-NUCLEOTIDASE; COMPND 6 EC: 3.1.3.5; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5E, NT5, NTE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSSETTA (DE3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET45B(+) KEYWDS DIMERIC, NUCLEOTIDASE, HYDROLASE, AMP BINDING, ZINC BINDING, KEYWDS 2 EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR J.PIPPEL,M.ZEBISCH,K.KNAPP,N.STRAETER REVDAT 3 15-NOV-17 4H1Y 1 REMARK REVDAT 2 26-DEC-12 4H1Y 1 JRNL REVDAT 1 28-NOV-12 4H1Y 0 JRNL AUTH K.KNAPP,M.ZEBISCH,J.PIPPEL,A.EL-TAYEB,C.E.MULLER,N.STRATER JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN ECTO-5'-NUCLEOTIDASE (CD73): JRNL TITL 2 INSIGHTS INTO THE REGULATION OF PURINERGIC SIGNALING. JRNL REF STRUCTURE V. 20 2161 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 23142347 JRNL DOI 10.1016/J.STR.2012.10.001 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 79925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1628 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.45 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 135 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 615 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.72000 REMARK 3 B22 (A**2) : 0.78000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.047 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.308 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4420 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6039 ; 2.009 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 585 ; 8.344 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 197 ;35.544 ;24.518 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;12.724 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.913 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3373 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 701 P 1315 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2070 24.2900 23.0090 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.0097 REMARK 3 T33: 0.0084 T12: -0.0031 REMARK 3 T13: 0.0003 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.3356 L22: 0.8403 REMARK 3 L33: 0.5936 L12: -0.1524 REMARK 3 L13: 0.0936 L23: -0.4143 REMARK 3 S TENSOR REMARK 3 S11: 0.0009 S12: -0.0272 S13: 0.0209 REMARK 3 S21: -0.0097 S22: 0.0080 S23: 0.0218 REMARK 3 S31: -0.0108 S32: -0.0006 S33: -0.0088 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4H1Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81621 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 19.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.42100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 6,000, 0.1 M TRIS-HCL, 1 M REMARK 280 ZINC, 10 MM (2,2'-(2-(2-((2S,3S,4R,5R)-5-(2,4-DIOXO-3,4- REMARK 280 DIHYDROPYRIMIDIN-1(2H)-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2- REMARK 280 CARBOXAMIDO)ETHYLAMINO)-2-OXOETHYLAZANEDIYL) DIACETIC ACID), PH REMARK 280 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.74150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 65.94650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.74150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 65.94650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 67.48300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH P1210 LIES ON A SPECIAL POSITION. REMARK 375 HOH P1247 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET P 4 REMARK 465 ALA P 5 REMARK 465 HIS P 6 REMARK 465 HIS P 7 REMARK 465 HIS P 8 REMARK 465 HIS P 9 REMARK 465 HIS P 10 REMARK 465 HIS P 11 REMARK 465 VAL P 12 REMARK 465 GLY P 13 REMARK 465 THR P 14 REMARK 465 GLY P 15 REMARK 465 SER P 16 REMARK 465 ASN P 17 REMARK 465 ASP P 18 REMARK 465 ASP P 19 REMARK 465 ASP P 20 REMARK 465 ASP P 21 REMARK 465 LYS P 22 REMARK 465 SER P 23 REMARK 465 PRO P 24 REMARK 465 ASP P 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O SER P 147 ND2 ASN P 190 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG P 40 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG P 40 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG P 63 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG P 72 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG P 72 NE - CZ - NH2 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG P 73 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG P 73 NE - CZ - NH2 ANGL. DEV. = 8.2 DEGREES REMARK 500 ASP P 85 CB - CG - OD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 LYS P 208 CD - CE - NZ ANGL. DEV. = -15.8 DEGREES REMARK 500 MET P 368 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 ARG P 545 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN P 88 125.49 80.70 REMARK 500 SER P 141 117.64 -163.68 REMARK 500 ASN P 211 33.56 71.37 REMARK 500 HIS P 243 -42.67 78.13 REMARK 500 SER P 255 -151.55 -145.68 REMARK 500 ALA P 280 55.75 -140.26 REMARK 500 TYR P 281 -123.05 60.36 REMARK 500 ASN P 306 147.46 -177.48 REMARK 500 ASP P 377 166.66 -29.23 REMARK 500 LYS P 536 -54.13 75.23 REMARK 500 TYR P 539 52.81 -156.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU P 129 PRO P 130 56.50 REMARK 500 ALA P 376 ASP P 377 147.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLU P 129 10.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P 733 O REMARK 620 2 HIS P 220 NE2 128.4 REMARK 620 3 ASN P 117 OD1 137.6 93.8 REMARK 620 4 HIS P 243 ND1 89.2 97.1 89.9 REMARK 620 5 ASP P 85 OD2 80.6 88.9 98.0 169.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN P 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP P 36 OD1 REMARK 620 2 HIS P 38 NE2 112.4 REMARK 620 3 HOH P 769 O 92.9 92.5 REMARK 620 4 ASP P 85 OD2 90.1 95.6 169.6 REMARK 620 5 HOH P 733 O 91.7 155.2 92.0 78.0 REMARK 620 6 HOH P1055 O 163.2 81.7 76.8 97.8 75.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA P 606 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH P1081 O REMARK 620 2 HOH P 734 O 89.6 REMARK 620 3 ASN P 213 O 91.7 81.2 REMARK 620 4 ASP P 237 OD1 96.0 142.2 135.7 REMARK 620 5 GLY P 298 O 173.8 86.3 83.1 90.1 REMARK 620 6 ASP P 237 OD2 88.9 165.4 84.4 52.4 93.8 REMARK 620 7 HOH P 892 O 92.9 73.2 153.9 69.2 90.5 121.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN P 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0YQ P 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL P 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL P 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA P 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H2B RELATED DB: PDB REMARK 900 RELATED ID: 4H2F RELATED DB: PDB REMARK 900 RELATED ID: 4H2I RELATED DB: PDB REMARK 900 RELATED ID: 4H2G RELATED DB: PDB DBREF 4H1Y P 27 549 UNP P21589 5NTD_HUMAN 27 549 SEQADV 4H1Y MET P 4 UNP P21589 INITIATING METHIONINE SEQADV 4H1Y ALA P 5 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 6 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 7 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 8 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 9 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 10 UNP P21589 EXPRESSION TAG SEQADV 4H1Y HIS P 11 UNP P21589 EXPRESSION TAG SEQADV 4H1Y VAL P 12 UNP P21589 EXPRESSION TAG SEQADV 4H1Y GLY P 13 UNP P21589 EXPRESSION TAG SEQADV 4H1Y THR P 14 UNP P21589 EXPRESSION TAG SEQADV 4H1Y GLY P 15 UNP P21589 EXPRESSION TAG SEQADV 4H1Y SER P 16 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASN P 17 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 18 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 19 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 20 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 21 UNP P21589 EXPRESSION TAG SEQADV 4H1Y LYS P 22 UNP P21589 EXPRESSION TAG SEQADV 4H1Y SER P 23 UNP P21589 EXPRESSION TAG SEQADV 4H1Y PRO P 24 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 25 UNP P21589 EXPRESSION TAG SEQADV 4H1Y PRO P 26 UNP P21589 EXPRESSION TAG SEQADV 4H1Y ASP P 53 UNP P21589 ASN 53 ENGINEERED MUTATION SEQADV 4H1Y SER P 145 UNP P21589 LYS 145 ENGINEERED MUTATION SEQADV 4H1Y SER P 147 UNP P21589 LYS 147 ENGINEERED MUTATION SEQADV 4H1Y ASP P 311 UNP P21589 ASN 311 ENGINEERED MUTATION SEQADV 4H1Y ASP P 333 UNP P21589 ASN 333 ENGINEERED MUTATION SEQADV 4H1Y ALA P 376 UNP P21589 THR 376 VARIANT SEQADV 4H1Y ASP P 403 UNP P21589 ASN 403 ENGINEERED MUTATION SEQADV 4H1Y SER P 478 UNP P21589 LYS 478 ENGINEERED MUTATION SEQRES 1 P 546 MET ALA HIS HIS HIS HIS HIS HIS VAL GLY THR GLY SER SEQRES 2 P 546 ASN ASP ASP ASP ASP LYS SER PRO ASP PRO TRP GLU LEU SEQRES 3 P 546 THR ILE LEU HIS THR ASN ASP VAL HIS SER ARG LEU GLU SEQRES 4 P 546 GLN THR SER GLU ASP SER SER LYS CYS VAL ASP ALA SER SEQRES 5 P 546 ARG CYS MET GLY GLY VAL ALA ARG LEU PHE THR LYS VAL SEQRES 6 P 546 GLN GLN ILE ARG ARG ALA GLU PRO ASN VAL LEU LEU LEU SEQRES 7 P 546 ASP ALA GLY ASP GLN TYR GLN GLY THR ILE TRP PHE THR SEQRES 8 P 546 VAL TYR LYS GLY ALA GLU VAL ALA HIS PHE MET ASN ALA SEQRES 9 P 546 LEU ARG TYR ASP ALA MET ALA LEU GLY ASN HIS GLU PHE SEQRES 10 P 546 ASP ASN GLY VAL GLU GLY LEU ILE GLU PRO LEU LEU LYS SEQRES 11 P 546 GLU ALA LYS PHE PRO ILE LEU SER ALA ASN ILE SER ALA SEQRES 12 P 546 SER GLY PRO LEU ALA SER GLN ILE SER GLY LEU TYR LEU SEQRES 13 P 546 PRO TYR LYS VAL LEU PRO VAL GLY ASP GLU VAL VAL GLY SEQRES 14 P 546 ILE VAL GLY TYR THR SER LYS GLU THR PRO PHE LEU SER SEQRES 15 P 546 ASN PRO GLY THR ASN LEU VAL PHE GLU ASP GLU ILE THR SEQRES 16 P 546 ALA LEU GLN PRO GLU VAL ASP LYS LEU LYS THR LEU ASN SEQRES 17 P 546 VAL ASN LYS ILE ILE ALA LEU GLY HIS SER GLY PHE GLU SEQRES 18 P 546 MET ASP LYS LEU ILE ALA GLN LYS VAL ARG GLY VAL ASP SEQRES 19 P 546 VAL VAL VAL GLY GLY HIS SER ASN THR PHE LEU TYR THR SEQRES 20 P 546 GLY ASN PRO PRO SER LYS GLU VAL PRO ALA GLY LYS TYR SEQRES 21 P 546 PRO PHE ILE VAL THR SER ASP ASP GLY ARG LYS VAL PRO SEQRES 22 P 546 VAL VAL GLN ALA TYR ALA PHE GLY LYS TYR LEU GLY TYR SEQRES 23 P 546 LEU LYS ILE GLU PHE ASP GLU ARG GLY ASN VAL ILE SER SEQRES 24 P 546 SER HIS GLY ASN PRO ILE LEU LEU ASP SER SER ILE PRO SEQRES 25 P 546 GLU ASP PRO SER ILE LYS ALA ASP ILE ASN LYS TRP ARG SEQRES 26 P 546 ILE LYS LEU ASP ASP TYR SER THR GLN GLU LEU GLY LYS SEQRES 27 P 546 THR ILE VAL TYR LEU ASP GLY SER SER GLN SER CYS ARG SEQRES 28 P 546 PHE ARG GLU CYS ASN MET GLY ASN LEU ILE CYS ASP ALA SEQRES 29 P 546 MET ILE ASN ASN ASN LEU ARG HIS ALA ASP GLU MET PHE SEQRES 30 P 546 TRP ASN HIS VAL SER MET CYS ILE LEU ASN GLY GLY GLY SEQRES 31 P 546 ILE ARG SER PRO ILE ASP GLU ARG ASN ASP GLY THR ILE SEQRES 32 P 546 THR TRP GLU ASN LEU ALA ALA VAL LEU PRO PHE GLY GLY SEQRES 33 P 546 THR PHE ASP LEU VAL GLN LEU LYS GLY SER THR LEU LYS SEQRES 34 P 546 LYS ALA PHE GLU HIS SER VAL HIS ARG TYR GLY GLN SER SEQRES 35 P 546 THR GLY GLU PHE LEU GLN VAL GLY GLY ILE HIS VAL VAL SEQRES 36 P 546 TYR ASP LEU SER ARG LYS PRO GLY ASP ARG VAL VAL LYS SEQRES 37 P 546 LEU ASP VAL LEU CYS THR SER CYS ARG VAL PRO SER TYR SEQRES 38 P 546 ASP PRO LEU LYS MET ASP GLU VAL TYR LYS VAL ILE LEU SEQRES 39 P 546 PRO ASN PHE LEU ALA ASN GLY GLY ASP GLY PHE GLN MET SEQRES 40 P 546 ILE LYS ASP GLU LEU LEU ARG HIS ASP SER GLY ASP GLN SEQRES 41 P 546 ASP ILE ASN VAL VAL SER THR TYR ILE SER LYS MET LYS SEQRES 42 P 546 VAL ILE TYR PRO ALA VAL GLU GLY ARG ILE LYS PHE SER HET ZN P 601 1 HET ZN P 602 1 HET 0YQ P 603 33 HET GOL P 604 6 HET CL P 605 1 HET CA P 606 1 HETNAM ZN ZINC ION HETNAM 0YQ 2,2'-[(2-{[2-({[(2S,3S,4R,5R)-5-(2,4-DIOXO-3,4- HETNAM 2 0YQ DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETNAM 3 0YQ DIHYDROXYTETRAHYDROFURAN-2-YL]CARBONYL}AMINO) HETNAM 4 0YQ ETHYL]AMINO}-2-OXOETHYL)IMINO]DIACETIC ACID (NON- HETNAM 5 0YQ PREFERRED NAME) HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN 2(ZN 2+) FORMUL 4 0YQ C17 H23 N5 O11 FORMUL 5 GOL C3 H8 O3 FORMUL 6 CL CL 1- FORMUL 7 CA CA 2+ FORMUL 8 HOH *615(H2 O) HELIX 1 1 ASP P 53 CYS P 57 5 5 HELIX 2 2 GLY P 60 GLU P 75 1 16 HELIX 3 3 THR P 90 LYS P 97 1 8 HELIX 4 4 GLY P 98 LEU P 108 1 11 HELIX 5 5 GLY P 116 ASP P 121 5 6 HELIX 6 6 VAL P 124 GLU P 129 1 6 HELIX 7 7 GLY P 148 SER P 155 1 8 HELIX 8 8 GLU P 180 SER P 185 1 6 HELIX 9 9 ASP P 195 LEU P 210 1 16 HELIX 10 10 GLY P 222 VAL P 233 1 12 HELIX 11 11 ASP P 317 THR P 336 1 20 HELIX 12 12 SER P 349 ARG P 354 1 6 HELIX 13 13 CYS P 358 ASN P 372 1 15 HELIX 14 14 GLY P 392 ILE P 394 5 3 HELIX 15 15 TRP P 408 LEU P 415 1 8 HELIX 16 16 GLY P 428 VAL P 439 1 12 HELIX 17 17 ASN P 499 ASN P 503 1 5 HELIX 18 18 GLY P 504 GLY P 507 5 4 HELIX 19 19 PHE P 508 LEU P 515 1 8 HELIX 20 20 ASP P 524 LYS P 536 1 13 SHEET 1 A 6 ILE P 139 LEU P 140 0 SHEET 2 A 6 ALA P 112 ALA P 114 1 N MET P 113 O LEU P 140 SHEET 3 A 6 VAL P 78 ASP P 82 1 N ASP P 82 O ALA P 114 SHEET 4 A 6 TRP P 27 THR P 34 1 N LEU P 32 O LEU P 79 SHEET 5 A 6 TYR P 286 PHE P 294 -1 O LEU P 290 N ILE P 31 SHEET 6 A 6 VAL P 300 GLY P 305 -1 O HIS P 304 N LYS P 291 SHEET 1 B 6 ILE P 139 LEU P 140 0 SHEET 2 B 6 ALA P 112 ALA P 114 1 N MET P 113 O LEU P 140 SHEET 3 B 6 VAL P 78 ASP P 82 1 N ASP P 82 O ALA P 114 SHEET 4 B 6 TRP P 27 THR P 34 1 N LEU P 32 O LEU P 79 SHEET 5 B 6 TYR P 286 PHE P 294 -1 O LEU P 290 N ILE P 31 SHEET 6 B 6 ILE P 308 LEU P 309 -1 O ILE P 308 N LEU P 287 SHEET 1 C 2 ILE P 144 SER P 145 0 SHEET 2 C 2 VAL P 192 PHE P 193 -1 O VAL P 192 N SER P 145 SHEET 1 D 6 TYR P 161 VAL P 166 0 SHEET 2 D 6 GLU P 169 THR P 177 -1 O VAL P 171 N LEU P 164 SHEET 3 D 6 ILE P 215 HIS P 220 1 O ILE P 216 N GLY P 172 SHEET 4 D 6 VAL P 238 VAL P 240 1 O VAL P 240 N ALA P 217 SHEET 5 D 6 LYS P 274 VAL P 278 1 O VAL P 278 N VAL P 239 SHEET 6 D 6 PHE P 265 THR P 268 -1 N VAL P 267 O VAL P 275 SHEET 1 E 3 THR P 405 THR P 407 0 SHEET 2 E 3 GLU P 338 THR P 342 -1 N LEU P 339 O ILE P 406 SHEET 3 E 3 VAL P 537 ILE P 538 1 O ILE P 538 N LYS P 341 SHEET 1 F 5 LEU P 450 GLY P 453 0 SHEET 2 F 5 MET P 386 ASN P 390 -1 N LEU P 389 O GLN P 451 SHEET 3 F 5 VAL P 492 PRO P 498 1 O ILE P 496 N MET P 386 SHEET 4 F 5 THR P 420 LYS P 427 -1 N LEU P 426 O TYR P 493 SHEET 5 F 5 ARG P 517 GLN P 523 -1 O ASP P 519 N LEU P 423 SHEET 1 G 4 TYR P 484 PRO P 486 0 SHEET 2 G 4 VAL P 469 LEU P 475 -1 N VAL P 474 O ASP P 485 SHEET 3 G 4 ILE P 455 TYR P 459 -1 N HIS P 456 O ASP P 473 SHEET 4 G 4 ILE P 546 PHE P 548 1 O LYS P 547 N TYR P 459 SSBOND 1 CYS P 51 CYS P 57 1555 1555 2.04 SSBOND 2 CYS P 353 CYS P 358 1555 1555 2.13 SSBOND 3 CYS P 365 CYS P 387 1555 1555 2.05 SSBOND 4 CYS P 476 CYS P 479 1555 1555 2.00 LINK ZN ZN P 601 O HOH P 733 1555 1555 1.96 LINK OD1 ASP P 36 ZN ZN P 602 1555 1555 2.01 LINK NE2 HIS P 220 ZN ZN P 601 1555 1555 2.01 LINK OD1 ASN P 117 ZN ZN P 601 1555 1555 2.04 LINK NE2 HIS P 38 ZN ZN P 602 1555 1555 2.04 LINK ZN ZN P 602 O HOH P 769 1555 1555 2.13 LINK ND1 HIS P 243 ZN ZN P 601 1555 1555 2.14 LINK OD2 ASP P 85 ZN ZN P 602 1555 1555 2.17 LINK ZN ZN P 602 O HOH P 733 1555 1555 2.20 LINK OD2 ASP P 85 ZN ZN P 601 1555 1555 2.27 LINK ZN ZN P 602 O HOH P1055 1555 1555 2.27 LINK CA CA P 606 O HOH P1081 1555 1555 2.37 LINK CA CA P 606 O HOH P 734 1555 1555 2.37 LINK O ASN P 213 CA CA P 606 1555 1555 2.39 LINK OD1 ASP P 237 CA CA P 606 1555 1555 2.45 LINK O GLY P 298 CA CA P 606 1555 1555 2.48 LINK OD2 ASP P 237 CA CA P 606 1555 1555 2.53 LINK CA CA P 606 O HOH P 892 1555 1555 2.62 CISPEP 1 TYR P 263 PRO P 264 0 -5.90 SITE 1 AC1 7 ASP P 36 ASP P 85 ASN P 117 HIS P 220 SITE 2 AC1 7 HIS P 243 ZN P 602 HOH P 733 SITE 1 AC2 7 ASP P 36 HIS P 38 ASP P 85 ZN P 601 SITE 2 AC2 7 HOH P 733 HOH P 769 HOH P1055 SITE 1 AC3 13 GLN P 231 ASP P 270 ARG P 354 ASN P 390 SITE 2 AC3 13 GLY P 392 GLY P 393 ARG P 395 PHE P 417 SITE 3 AC3 13 GLY P 447 PHE P 500 ASP P 506 HOH P 954 SITE 4 AC3 13 HOH P1082 SITE 1 AC4 5 TYR P 96 LYS P 326 LYS P 330 LYS P 464 SITE 2 AC4 5 HOH P 957 SITE 1 AC5 5 PHE P 223 GLU P 224 HOH P 971 HOH P 977 SITE 2 AC5 5 HOH P1314 SITE 1 AC6 6 ASN P 213 ASP P 237 GLY P 298 HOH P 734 SITE 2 AC6 6 HOH P 892 HOH P1081 CRYST1 67.483 131.893 66.333 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014819 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015075 0.00000