HEADER PHOTOSYNTHESIS 16-SEP-12 4H44 TITLE 2.70 A CYTOCHROME B6F COMPLEX STRUCTURE FROM NOSTOC PCC 7120 CAVEAT 4H44 CHIRALITY ERRORS AT C2'/C5' ATOMS OF UMQ A 304, C1'/C5' CAVEAT 2 4H44 ATOMS OF UMQ A 305, C1/C2 ATOMS OF UMQ A 308, C2/C3' ATOMS CAVEAT 3 4H44 OF UMQ A 309, AND C2/C5 ATOMS OF UMQ F 101. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B6; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: CYTOCHROME B6-F COMPLEX SUBUNIT 4; COMPND 6 CHAIN: B; COMPND 7 SYNONYM: 17 KDA POLYPEPTIDE; COMPND 8 MOL_ID: 3; COMPND 9 MOLECULE: APOCYTOCHROME F; COMPND 10 CHAIN: C; COMPND 11 MOL_ID: 4; COMPND 12 MOLECULE: CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNIT 1; COMPND 13 CHAIN: D; COMPND 14 SYNONYM: PLASTOHYDROQUINONE:PLASTOCYANIN OXIDOREDUCTASE IRON-SULFUR COMPND 15 PROTEIN 1, ISP 1, RISP 1, RIESKE IRON-SULFUR PROTEIN 1; COMPND 16 EC: 1.10.9.1; COMPND 17 MOL_ID: 5; COMPND 18 MOLECULE: CYTOCHROME B6-F COMPLEX SUBUNIT 6; COMPND 19 CHAIN: E; COMPND 20 SYNONYM: CYTOCHROME B6-F COMPLEX SUBUNIT PETL, CYTOCHROME B6-F COMPND 21 COMPLEX SUBUNIT VI; COMPND 22 MOL_ID: 6; COMPND 23 MOLECULE: CYTOCHROME B6-F COMPLEX SUBUNIT 7; COMPND 24 CHAIN: F; COMPND 25 SYNONYM: CYTOCHROME B6-F COMPLEX SUBUNIT PETM, CYTOCHROME B6-F COMPND 26 COMPLEX SUBUNIT VII; COMPND 27 MOL_ID: 7; COMPND 28 MOLECULE: CYTOCHROME B6-F COMPLEX SUBUNIT 5; COMPND 29 CHAIN: G; COMPND 30 SYNONYM: CYTOCHROME B6-F COMPLEX SUBUNIT PETG, CYTOCHROME B6-F COMPND 31 COMPLEX SUBUNIT V; COMPND 32 MOL_ID: 8; COMPND 33 MOLECULE: CYTOCHROME B6-F COMPLEX SUBUNIT 8; COMPND 34 CHAIN: H; COMPND 35 SYNONYM: CYTOCHROME B6-F COMPLEX SUBUNIT PETN, CYTOCHROME B6-F COMPND 36 COMPLEX SUBUNIT VIII SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 3 ORGANISM_TAXID: 103690; SOURCE 4 STRAIN: PCC 7120; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 7 ORGANISM_TAXID: 103690; SOURCE 8 STRAIN: PCC 7120; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 11 ORGANISM_TAXID: 103690; SOURCE 12 STRAIN: PCC 7120; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 15 ORGANISM_TAXID: 103690; SOURCE 16 STRAIN: PCC 7120; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 19 ORGANISM_TAXID: 103690; SOURCE 20 STRAIN: PCC 7120; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 23 ORGANISM_TAXID: 103690; SOURCE 24 STRAIN: PCC 7120; SOURCE 25 MOL_ID: 7; SOURCE 26 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 27 ORGANISM_TAXID: 103690; SOURCE 28 STRAIN: PCC 7120; SOURCE 29 MOL_ID: 8; SOURCE 30 ORGANISM_SCIENTIFIC: NOSTOC; SOURCE 31 ORGANISM_TAXID: 103690; SOURCE 32 STRAIN: PCC 7120 KEYWDS ALPHA HELIX, BETA-SHEET, PLASTOQUINOL-PLASTOCYANIN OXIDOREDUCTASE, KEYWDS 2 PLASTOCYANIN, THYLAKOID MEMBRANES, PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.S.HASAN,E.YAMASHITA,D.BANIULIS,W.A.CRAMER REVDAT 4 20-NOV-24 4H44 1 REMARK REVDAT 3 08-NOV-23 4H44 1 REMARK FORMUL LINK REVDAT 2 03-APR-13 4H44 1 JRNL REVDAT 1 20-FEB-13 4H44 0 JRNL AUTH S.S.HASAN,E.YAMASHITA,D.BANIULIS,W.A.CRAMER JRNL TITL QUINONE-DEPENDENT PROTON TRANSFER PATHWAYS IN THE JRNL TITL 2 PHOTOSYNTHETIC CYTOCHROME B6F COMPLEX JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 4297 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23440205 JRNL DOI 10.1073/PNAS.1222248110 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 74023 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 3733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5510 - 8.0742 0.83 2474 125 0.2252 0.2571 REMARK 3 2 8.0742 - 6.4176 0.96 2678 136 0.2065 0.2188 REMARK 3 3 6.4176 - 5.6090 0.98 2662 145 0.2266 0.2539 REMARK 3 4 5.6090 - 5.0973 0.98 2656 130 0.2033 0.2184 REMARK 3 5 5.0973 - 4.7326 0.98 2636 148 0.1941 0.2080 REMARK 3 6 4.7326 - 4.4539 0.98 2586 157 0.1985 0.2172 REMARK 3 7 4.4539 - 4.2312 0.98 2629 136 0.2032 0.2014 REMARK 3 8 4.2312 - 4.0472 0.98 2616 138 0.2049 0.2379 REMARK 3 9 4.0472 - 3.8915 0.98 2599 151 0.2122 0.2450 REMARK 3 10 3.8915 - 3.7573 0.99 2602 146 0.2071 0.2676 REMARK 3 11 3.7573 - 3.6399 0.99 2592 153 0.2287 0.2656 REMARK 3 12 3.6399 - 3.5359 0.99 2609 127 0.2246 0.2522 REMARK 3 13 3.5359 - 3.4429 0.99 2619 139 0.2134 0.2599 REMARK 3 14 3.4429 - 3.3590 0.99 2573 154 0.2210 0.2436 REMARK 3 15 3.3590 - 3.2826 0.99 2619 129 0.2229 0.2564 REMARK 3 16 3.2826 - 3.2128 0.99 2620 112 0.2310 0.2591 REMARK 3 17 3.2128 - 3.1486 0.99 2609 144 0.2260 0.2625 REMARK 3 18 3.1486 - 3.0892 0.99 2613 129 0.2355 0.2668 REMARK 3 19 3.0892 - 3.0340 0.99 2576 148 0.2362 0.3155 REMARK 3 20 3.0340 - 2.9826 0.99 2597 142 0.2582 0.2810 REMARK 3 21 2.9826 - 2.9345 0.99 2563 155 0.2548 0.3056 REMARK 3 22 2.9345 - 2.8894 0.99 2579 154 0.2611 0.3339 REMARK 3 23 2.8894 - 2.8469 0.99 2586 125 0.2724 0.2584 REMARK 3 24 2.8469 - 2.8068 0.99 2624 138 0.2642 0.2928 REMARK 3 25 2.8068 - 2.7689 1.00 2588 134 0.2740 0.3295 REMARK 3 26 2.7689 - 2.7329 1.00 2616 112 0.3011 0.2931 REMARK 3 27 2.7329 - 2.6988 0.99 2569 126 0.3100 0.3443 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 69.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 81.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 8262 REMARK 3 ANGLE : 0.997 11269 REMARK 3 CHIRALITY : 0.191 1245 REMARK 3 PLANARITY : 0.003 1337 REMARK 3 DIHEDRAL : 15.742 3013 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000074994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-07 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 74395 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 39.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ID 2ZT9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 121.45767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 242.91533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 182.18650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 303.64417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.72883 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 121.45767 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 242.91533 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 303.64417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 182.18650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 60.72883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXADECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXADECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 90010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -970.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -79.56350 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 137.80802 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 60.72883 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 GLN D 3 REMARK 465 PHE D 4 REMARK 465 SER D 5 REMARK 465 GLU D 6 REMARK 465 SER D 7 REMARK 465 VAL D 8 REMARK 465 VAL D 93 REMARK 465 GLU D 94 REMARK 465 SER D 95 REMARK 465 LYS D 96 REMARK 465 GLU D 97 REMARK 465 GLU F 33 REMARK 465 GLU F 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 FE HEM A 303 O HOH A 401 1.70 REMARK 500 O HOH B 301 O HOH B 318 1.98 REMARK 500 O1A HEM A 303 O HOH A 425 2.03 REMARK 500 NH1 ARG B 126 O HOH B 319 2.04 REMARK 500 CE1 HIS A 86 FE HEM A 301 2.06 REMARK 500 O HOH B 317 O HOH G 205 2.06 REMARK 500 O GLN A 47 O HOH A 422 2.06 REMARK 500 O VAL C 151 O HOH C 417 2.07 REMARK 500 OG1 THR B 140 O HOH B 318 2.08 REMARK 500 O HOH A 405 O HOH A 425 2.11 REMARK 500 NB CLA B 201 O HOH B 301 2.13 REMARK 500 OE1 GLU B 115 O HOH B 319 2.15 REMARK 500 O HOH C 421 O HOH C 438 2.18 REMARK 500 O LEU A 215 O HOH A 406 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH1 ARG A 11 OE1 GLU A 115 12565 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL B 39 CG1 - CB - CG2 ANGL. DEV. = 10.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 3 100.06 57.35 REMARK 500 PHE A 189 -61.78 -122.54 REMARK 500 ALA B 2 85.16 54.43 REMARK 500 MET B 22 40.38 -152.37 REMARK 500 GLU B 74 107.35 67.06 REMARK 500 THR B 156 -9.02 -146.14 REMARK 500 CYS C 25 -35.47 -132.50 REMARK 500 ASP C 100 40.62 -93.56 REMARK 500 ASP C 139 108.43 -166.14 REMARK 500 ASN C 169 45.08 -98.71 REMARK 500 GLU C 187 -158.47 -160.42 REMARK 500 ASP C 190 -131.02 -70.09 REMARK 500 SER C 192 -162.96 62.27 REMARK 500 LYS C 200 -99.49 -173.60 REMARK 500 GLU C 202 139.97 64.88 REMARK 500 SER C 203 -163.93 -169.33 REMARK 500 SER C 208 -169.17 -116.85 REMARK 500 GLU C 216 132.39 114.27 REMARK 500 SER C 220 -88.86 -84.14 REMARK 500 GLN C 223 121.84 -174.65 REMARK 500 THR C 232 -109.79 -121.52 REMARK 500 ASN C 233 -169.77 176.91 REMARK 500 ALA C 285 -83.07 -68.06 REMARK 500 MET C 287 94.18 -50.38 REMARK 500 ASN C 288 84.51 -162.20 REMARK 500 ALA D 47 36.30 -83.71 REMARK 500 ALA D 50 43.74 -88.69 REMARK 500 THR D 54 -96.20 -156.91 REMARK 500 ASP D 58 -147.82 -87.01 REMARK 500 ASN D 62 -96.55 -85.66 REMARK 500 ASP D 63 143.64 -171.34 REMARK 500 GLU D 71 -74.56 -59.74 REMARK 500 ASN D 74 134.29 -177.45 REMARK 500 ARG D 78 92.04 166.32 REMARK 500 HIS D 110 -74.26 -70.27 REMARK 500 TYR D 133 -154.43 -128.54 REMARK 500 PRO D 145 -79.53 -66.48 REMARK 500 ASN D 157 -174.96 68.19 REMARK 500 PRO D 176 -169.37 -77.14 REMARK 500 SER F 2 -41.35 -160.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OPC B 202 REMARK 610 OPC C 302 REMARK 610 7PH C 303 REMARK 610 SQD D 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 86 NE2 REMARK 620 2 HEM A 301 NA 100.5 REMARK 620 3 HEM A 301 NB 85.6 89.8 REMARK 620 4 HEM A 301 NC 87.8 171.7 91.2 REMARK 620 5 HEM A 301 ND 103.1 90.8 171.0 87.0 REMARK 620 6 HIS A 187 NE2 171.7 82.9 86.9 88.9 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HEM A 302 NA 88.1 REMARK 620 3 HEM A 302 NB 90.6 91.0 REMARK 620 4 HEM A 302 NC 95.7 176.1 89.1 REMARK 620 5 HEM A 302 ND 86.1 90.0 176.5 90.1 REMARK 620 6 HIS A 202 NE2 170.9 84.0 93.9 92.2 89.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CLA B 201 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 301 O REMARK 620 2 CLA B 201 NA 83.7 REMARK 620 3 CLA B 201 NB 65.9 92.1 REMARK 620 4 CLA B 201 NC 98.2 176.6 91.3 REMARK 620 5 CLA B 201 ND 115.0 90.6 177.2 86.0 REMARK 620 6 HOH B 318 O 46.0 90.8 111.0 88.6 69.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 301 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 1 N REMARK 620 2 HEM C 301 NA 100.1 REMARK 620 3 HEM C 301 NB 101.8 90.1 REMARK 620 4 HEM C 301 NC 85.9 174.0 88.5 REMARK 620 5 HEM C 301 ND 80.9 91.3 176.8 89.8 REMARK 620 6 HIS C 26 NE2 162.7 86.8 94.0 87.5 83.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 202 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 108 SG REMARK 620 2 FES D 202 S1 141.4 REMARK 620 3 FES D 202 S2 109.8 89.7 REMARK 620 4 CYS D 126 SG 50.2 94.0 102.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES D 202 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 110 ND1 REMARK 620 2 FES D 202 S1 118.9 REMARK 620 3 FES D 202 S2 109.2 89.7 REMARK 620 4 HIS D 129 ND1 97.2 119.6 123.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMQ A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMQ A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MYS A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMQ A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMQ A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CLA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPC B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OPC C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 7PH C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD C 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SQD D 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES D 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UMQ F 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OCT F 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BCR G 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H0L RELATED DB: PDB REMARK 900 RELATED ID: 4H13 RELATED DB: PDB REMARK 900 RELATED ID: 2ZT9 RELATED DB: PDB REMARK 900 RELATED ID: 2E74 RELATED DB: PDB REMARK 900 RELATED ID: 2E75 RELATED DB: PDB REMARK 900 RELATED ID: 2E76 RELATED DB: PDB REMARK 900 RELATED ID: 1VF5 RELATED DB: PDB REMARK 900 RELATED ID: 2D2C RELATED DB: PDB REMARK 900 RELATED ID: 1Q90 RELATED DB: PDB DBREF 4H44 A 1 215 UNP P0A384 CYB6_NOSS1 1 215 DBREF 4H44 B 1 160 UNP Q93SX1 PETD_NOSS1 1 160 DBREF 4H44 C 1 289 UNP Q93SW9 CYF_NOSS1 45 333 DBREF 4H44 D 1 179 UNP Q93SX0 UCRIA_NOSS1 1 179 DBREF 4H44 E 1 31 UNP Q8YVQ2 PETL_NOSS1 1 31 DBREF 4H44 F 1 34 UNP P0A3Y1 PETM_NOSS1 1 34 DBREF 4H44 G 1 37 UNP P58246 PETG_NOSS1 1 37 DBREF 4H44 H 1 29 UNP P61048 PETN_NOSS1 1 29 SEQRES 1 A 215 MET ALA ASN VAL TYR ASP TRP PHE GLU GLU ARG LEU GLU SEQRES 2 A 215 ILE GLN ALA ILE ALA GLU ASP VAL THR SER LYS TYR VAL SEQRES 3 A 215 PRO PRO HIS VAL ASN ILE PHE TYR CYS LEU GLY GLY ILE SEQRES 4 A 215 THR LEU VAL CYS PHE LEU ILE GLN PHE ALA THR GLY PHE SEQRES 5 A 215 ALA MET THR PHE TYR TYR LYS PRO THR VAL ALA GLU ALA SEQRES 6 A 215 TYR SER SER VAL GLN TYR ILE MET ASN GLU VAL ASN PHE SEQRES 7 A 215 GLY TRP LEU ILE ARG SER ILE HIS ARG TRP SER ALA SER SEQRES 8 A 215 MET MET VAL LEU MET MET ILE LEU HIS VAL PHE ARG VAL SEQRES 9 A 215 TYR LEU THR GLY GLY PHE LYS LYS PRO ARG GLU LEU THR SEQRES 10 A 215 TRP VAL SER GLY VAL ILE LEU ALA VAL ILE THR VAL SER SEQRES 11 A 215 PHE GLY VAL THR GLY TYR SER LEU PRO TRP ASP GLN VAL SEQRES 12 A 215 GLY TYR TRP ALA VAL LYS ILE VAL SER GLY VAL PRO GLU SEQRES 13 A 215 ALA ILE PRO VAL VAL GLY VAL LEU ILE SER ASP LEU LEU SEQRES 14 A 215 ARG GLY GLY SER SER VAL GLY GLN ALA THR LEU THR ARG SEQRES 15 A 215 TYR TYR SER ALA HIS THR PHE VAL LEU PRO TRP LEU ILE SEQRES 16 A 215 ALA VAL PHE MET LEU PHE HIS PHE LEU MET ILE ARG LYS SEQRES 17 A 215 GLN GLY ILE SER GLY PRO LEU SEQRES 1 B 160 MET ALA THR HIS LYS LYS PRO ASP LEU SER ASP PRO THR SEQRES 2 B 160 LEU ARG ALA LYS LEU ALA LYS GLY MET GLY HIS ASN TYR SEQRES 3 B 160 TYR GLY GLU PRO ALA TRP PRO ASN ASP LEU LEU TYR VAL SEQRES 4 B 160 PHE PRO ILE VAL ILE MET GLY SER PHE ALA CYS ILE VAL SEQRES 5 B 160 ALA LEU ALA VAL LEU ASP PRO ALA MET THR GLY GLU PRO SEQRES 6 B 160 ALA ASN PRO PHE ALA THR PRO LEU GLU ILE LEU PRO GLU SEQRES 7 B 160 TRP TYR LEU TYR PRO VAL PHE GLN ILE LEU ARG SER LEU SEQRES 8 B 160 PRO ASN LYS LEU LEU GLY VAL LEU ALA MET ALA SER VAL SEQRES 9 B 160 PRO LEU GLY LEU ILE LEU VAL PRO PHE ILE GLU ASN VAL SEQRES 10 B 160 ASN LYS PHE GLN ASN PRO PHE ARG ARG PRO VAL ALA THR SEQRES 11 B 160 THR VAL PHE LEU PHE GLY THR LEU VAL THR LEU TRP LEU SEQRES 12 B 160 GLY ILE GLY ALA ALA LEU PRO LEU ASP LYS SER LEU THR SEQRES 13 B 160 LEU GLY LEU PHE SEQRES 1 C 289 TYR PRO PHE TRP ALA GLN GLN THR TYR PRO GLU THR PRO SEQRES 2 C 289 ARG GLU PRO THR GLY ARG ILE VAL CYS ALA ASN CYS HIS SEQRES 3 C 289 LEU ALA ALA LYS PRO THR GLU VAL GLU VAL PRO GLN SER SEQRES 4 C 289 VAL LEU PRO ASP THR VAL PHE LYS ALA VAL VAL LYS ILE SEQRES 5 C 289 PRO TYR ASP THR SER VAL GLN GLN VAL GLY ALA ASP GLY SEQRES 6 C 289 SER LYS VAL GLY LEU ASN VAL GLY ALA VAL LEU MET LEU SEQRES 7 C 289 PRO GLU GLY PHE LYS ILE ALA PRO GLU ASP ARG ILE PRO SEQRES 8 C 289 GLU GLU LEU LYS GLU GLU ILE GLY ASP VAL TYR PHE GLN SEQRES 9 C 289 PRO TYR GLY GLU ASP LYS ASP ASN ILE VAL ILE VAL GLY SEQRES 10 C 289 PRO LEU PRO GLY GLU GLN TYR GLN GLU ILE VAL PHE PRO SEQRES 11 C 289 VAL LEU SER PRO ASN PRO ALA ASN ASP LYS ASN ILE HIS SEQRES 12 C 289 PHE GLY LYS TYR SER VAL HIS VAL GLY GLY ASN ARG GLY SEQRES 13 C 289 ARG GLY GLN VAL TYR PRO THR GLY GLU LYS SER ASN ASN SEQRES 14 C 289 ASN LEU TYR SER ALA ALA ALA THR GLY THR ILE SER LYS SEQRES 15 C 289 ILE ALA LYS GLN GLU GLY GLU ASP GLY SER VAL LYS TYR SEQRES 16 C 289 LEU VAL ASP ILE LYS THR GLU SER GLY GLU VAL VAL SER SEQRES 17 C 289 ASP THR ILE PRO ALA GLY PRO GLU LEU ILE VAL SER GLU SEQRES 18 C 289 GLY GLN ALA VAL THR ALA GLY ASP ALA LEU THR ASN ASN SEQRES 19 C 289 PRO ASN VAL GLY GLY PHE GLY GLN LEU ASP ALA GLU ILE SEQRES 20 C 289 VAL LEU GLN ASP ALA ASN ARG VAL GLY TRP LEU ILE ALA SEQRES 21 C 289 PHE VAL ALA LEU VAL MET LEU ALA GLN VAL MET LEU VAL SEQRES 22 C 289 LEU LYS LYS LYS GLN VAL GLU LYS VAL GLN ALA ALA GLU SEQRES 23 C 289 MET ASN PHE SEQRES 1 D 179 MET ALA GLN PHE SER GLU SER VAL ASP VAL PRO ASP MET SEQRES 2 D 179 GLY ARG ARG GLN PHE MET ASN LEU LEU THR PHE GLY THR SEQRES 3 D 179 VAL THR GLY VAL ALA LEU GLY ALA LEU TYR PRO VAL VAL SEQRES 4 D 179 ASN TYR PHE ILE PRO PRO ALA ALA GLY GLY ALA GLY GLY SEQRES 5 D 179 GLY THR THR ALA LYS ASP GLU LEU GLY ASN ASP VAL SER SEQRES 6 D 179 VAL SER LYS PHE LEU GLU SER HIS ASN VAL GLY ASP ARG SEQRES 7 D 179 THR LEU VAL GLN GLY LEU LYS GLY ASP PRO THR TYR ILE SEQRES 8 D 179 VAL VAL GLU SER LYS GLU ALA ILE THR ASP TYR GLY ILE SEQRES 9 D 179 ASN ALA VAL CYS THR HIS LEU GLY CYS VAL VAL PRO TRP SEQRES 10 D 179 ASN ALA ALA GLU ASN LYS PHE LYS CYS PRO CYS HIS GLY SEQRES 11 D 179 SER GLN TYR ASP ALA THR GLY LYS VAL VAL ARG GLY PRO SEQRES 12 D 179 ALA PRO LYS SER LEU ALA LEU SER HIS ALA LYS THR GLU SEQRES 13 D 179 ASN ASP LYS ILE VAL LEU THR SER TRP THR GLU THR ASP SEQRES 14 D 179 PHE ARG THR GLY GLU GLU PRO TRP TRP SER SEQRES 1 E 31 MET LEU ALA ILE VAL ALA TYR ILE GLY PHE LEU ALA LEU SEQRES 2 E 31 PHE THR GLY ILE ALA ALA GLY LEU LEU PHE GLY LEU ARG SEQRES 3 E 31 SER ALA LYS ILE LEU SEQRES 1 F 34 MET SER GLY GLU LEU LEU ASN ALA ALA LEU LEU SER PHE SEQRES 2 F 34 GLY LEU ILE PHE VAL GLY TRP ALA LEU GLY ALA LEU LEU SEQRES 3 F 34 LEU LYS ILE GLN GLY ALA GLU GLU SEQRES 1 G 37 MET VAL GLU PRO LEU LEU SER GLY ILE VAL LEU GLY LEU SEQRES 2 G 37 ILE VAL VAL THR LEU ALA GLY LEU PHE TYR ALA ALA TYR SEQRES 3 G 37 LYS GLN TYR LYS ARG PRO ASN GLU LEU GLY GLY SEQRES 1 H 29 MET ALA ILE LEU THR LEU GLY TRP VAL SER LEU LEU VAL SEQRES 2 H 29 VAL PHE THR TRP SER ILE ALA MET VAL VAL TRP GLY ARG SEQRES 3 H 29 ASN GLY LEU HET HEM A 301 73 HET HEM A 302 73 HET HEM A 303 73 HET UMQ A 304 77 HET UMQ A 305 77 HET MYS A 306 47 HET UMQ A 307 78 HET 8K6 A 308 56 HET UMQ A 309 77 HET CLA B 201 127 HET OPC B 202 137 HET HEM C 301 73 HET OPC C 302 137 HET 7PH C 303 81 HET CD C 304 1 HET SQD D 201 53 HET FES D 202 4 HET UMQ F 101 77 HET OCT F 102 26 HET BCR G 101 96 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM UMQ UNDECYL-MALTOSIDE HETNAM MYS PENTADECANE HETNAM 8K6 OCTADECANE HETNAM CLA CHLOROPHYLL A HETNAM OPC (7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC- HETNAM 2 OPC 8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17- HETNAM 3 OPC EN-1-AMINIUM 4-OXIDE HETNAM 7PH (1R)-2-(DODECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HETNAM 2 7PH TETRADECANOATE HETNAM CD CADMIUM ION HETNAM SQD 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D- HETNAM 2 SQD GLUCOPYRANOSYL]-SN-GLYCEROL HETNAM FES FE2/S2 (INORGANIC) CLUSTER HETNAM OCT N-OCTANE HETNAM BCR BETA-CAROTENE HETSYN HEM HEME HETSYN UMQ UNDECYL-BETA-D-MALTOPYRANOSIDE HETSYN 8K6 N-OCTADECANE HETSYN OPC DIOLEOYL-PHOSPHATIDYLCHOLINE HETSYN 7PH PHOSPHATIDIC ACID HETSYN SQD SULFOQUINOVOSYLDIACYLGLYCEROL FORMUL 9 HEM 4(C34 H32 FE N4 O4) FORMUL 12 UMQ 5(C23 H44 O11) FORMUL 14 MYS C15 H32 FORMUL 16 8K6 C18 H38 FORMUL 18 CLA C55 H72 MG N4 O5 FORMUL 19 OPC 2(C45 H87 N O8 P 1+) FORMUL 22 7PH C29 H57 O8 P FORMUL 23 CD CD 2+ FORMUL 24 SQD C41 H78 O12 S FORMUL 25 FES FE2 S2 FORMUL 27 OCT C8 H18 FORMUL 28 BCR C40 H56 FORMUL 29 HOH *102(H2 O) HELIX 1 1 ASN A 3 GLU A 13 1 11 HELIX 2 2 GLU A 13 THR A 22 1 10 HELIX 3 3 ASN A 31 TYR A 34 5 4 HELIX 4 4 CYS A 35 THR A 55 1 21 HELIX 5 5 GLU A 64 GLU A 75 1 12 HELIX 6 6 PHE A 78 LEU A 106 1 29 HELIX 7 7 ARG A 114 SER A 137 1 24 HELIX 8 8 ASP A 141 SER A 152 1 12 HELIX 9 9 GLY A 153 ILE A 158 5 6 HELIX 10 10 VAL A 161 GLY A 171 1 11 HELIX 11 11 GLY A 176 PHE A 189 1 14 HELIX 12 12 PHE A 189 GLY A 210 1 22 HELIX 13 13 ASP B 11 LYS B 20 1 10 HELIX 14 14 VAL B 39 ASP B 58 1 20 HELIX 15 15 GLU B 78 TYR B 80 5 3 HELIX 16 16 LEU B 81 LEU B 91 1 11 HELIX 17 17 ASN B 93 GLU B 115 1 23 HELIX 18 18 ASN B 116 ASN B 118 5 3 HELIX 19 19 ASN B 122 ARG B 125 5 4 HELIX 20 20 ARG B 126 ALA B 148 1 23 HELIX 21 21 LEU B 149 SER B 154 5 6 HELIX 22 22 PRO C 2 TYR C 9 1 8 HELIX 23 23 ILE C 20 CYS C 25 5 6 HELIX 24 24 PRO C 86 ILE C 90 5 5 HELIX 25 25 PRO C 91 GLY C 99 1 9 HELIX 26 26 ASN C 135 ASP C 139 5 5 HELIX 27 27 ASP C 251 GLU C 286 1 36 HELIX 28 28 ASP D 12 ILE D 43 1 32 HELIX 29 29 SER D 65 HIS D 73 1 9 HELIX 30 30 LEU D 84 GLY D 86 5 3 HELIX 31 31 LEU E 2 ALA E 28 1 27 HELIX 32 32 SER F 2 GLY F 31 1 30 HELIX 33 33 GLU G 3 ARG G 31 1 29 HELIX 34 34 ALA H 2 ASN H 27 1 26 SHEET 1 A 2 TYR A 25 VAL A 26 0 SHEET 2 A 2 GLU B 29 PRO B 30 -1 O GLU B 29 N VAL A 26 SHEET 1 B 4 GLU C 33 GLU C 35 0 SHEET 2 B 4 VAL C 45 LYS C 51 -1 O LYS C 51 N GLU C 33 SHEET 3 B 4 GLU C 126 LEU C 132 -1 O ILE C 127 N VAL C 50 SHEET 4 B 4 LYS C 83 ILE C 84 -1 N LYS C 83 O LEU C 132 SHEET 1 C 6 SER C 39 VAL C 40 0 SHEET 2 C 6 GLY C 239 LEU C 249 1 O VAL C 248 N VAL C 40 SHEET 3 C 6 GLY C 145 ARG C 155 -1 N GLY C 145 O LEU C 249 SHEET 4 C 6 ASN C 71 MET C 77 -1 N MET C 77 O HIS C 150 SHEET 5 C 6 ILE C 113 PRO C 120 -1 O LEU C 119 N VAL C 72 SHEET 6 C 6 PHE C 103 PRO C 105 -1 N GLN C 104 O ILE C 115 SHEET 1 D 2 GLN C 60 VAL C 61 0 SHEET 2 D 2 LYS C 67 VAL C 68 -1 O VAL C 68 N GLN C 60 SHEET 1 E 2 GLY C 178 THR C 179 0 SHEET 2 E 2 ALA C 224 VAL C 225 -1 O VAL C 225 N GLY C 178 SHEET 1 F 2 LYS C 194 VAL C 197 0 SHEET 2 F 2 ASP C 209 PRO C 212 -1 O ASP C 209 N VAL C 197 SHEET 1 G 5 THR D 79 GLN D 82 0 SHEET 2 G 5 PRO D 88 ILE D 91 -1 O ILE D 91 N THR D 79 SHEET 3 G 5 TYR D 102 ASN D 105 -1 O ILE D 104 N TYR D 90 SHEET 4 G 5 LEU D 150 LYS D 154 -1 O SER D 151 N GLY D 103 SHEET 5 G 5 VAL D 161 SER D 164 -1 O THR D 163 N HIS D 152 SHEET 1 H 2 TRP D 117 ASN D 118 0 SHEET 2 H 2 LYS D 123 PHE D 124 -1 O LYS D 123 N ASN D 118 SSBOND 1 CYS D 108 CYS D 126 1555 1555 2.04 SSBOND 2 CYS D 113 CYS D 128 1555 1555 2.03 LINK NE2 HIS A 86 FE HEM A 301 1555 1555 2.17 LINK NE2 HIS A 100 FE HEM A 302 1555 1555 2.08 LINK NE2 HIS A 187 FE HEM A 301 1555 1555 1.94 LINK NE2 HIS A 202 FE HEM A 302 1555 1555 2.13 LINK MG CLA B 201 O HOH B 301 1555 1555 1.90 LINK MG CLA B 201 O HOH B 318 1555 1555 2.75 LINK N TYR C 1 FE HEM C 301 1555 1555 2.36 LINK NE2 HIS C 26 FE HEM C 301 1555 1555 2.33 LINK NE2 HIS C 143 CD CD C 304 1555 1555 2.54 LINK SG CYS D 108 FE1 FES D 202 1555 1555 2.43 LINK ND1 HIS D 110 FE2 FES D 202 1555 1555 2.29 LINK SG CYS D 126 FE1 FES D 202 1555 1555 2.37 LINK ND1 HIS D 129 FE2 FES D 202 1555 1555 2.18 CISPEP 1 LYS A 112 PRO A 113 0 2.08 CISPEP 2 TRP B 32 PRO B 33 0 -0.47 SITE 1 AC1 17 GLN A 47 PHE A 48 GLY A 51 PHE A 52 SITE 2 AC1 17 MET A 54 ARG A 83 HIS A 86 ARG A 87 SITE 3 AC1 17 ALA A 90 THR A 128 PHE A 131 GLY A 135 SITE 4 AC1 17 LEU A 138 PRO A 139 HIS A 187 PHE A 189 SITE 5 AC1 17 HOH A 422 SITE 1 AC2 25 TYR A 34 GLY A 37 GLY A 38 THR A 40 SITE 2 AC2 25 MET A 93 HIS A 100 VAL A 101 ARG A 103 SITE 3 AC2 25 VAL A 104 GLY A 109 ARG A 114 THR A 117 SITE 4 AC2 25 TRP A 118 GLY A 121 VAL A 122 MET A 199 SITE 5 AC2 25 HIS A 202 PHE A 203 ILE A 206 ILE A 211 SITE 6 AC2 25 SER A 212 HEM A 303 HOH A 401 HOH A 409 SITE 7 AC2 25 HOH A 413 SITE 1 AC3 17 TYR A 34 CYS A 35 GLY A 38 LEU A 41 SITE 2 AC3 17 ILE A 206 ARG A 207 GLY A 210 ILE A 211 SITE 3 AC3 17 HEM A 302 UMQ A 307 HOH A 401 HOH A 416 SITE 4 AC3 17 HOH A 425 HOH A 426 VAL B 39 PHE B 40 SITE 5 AC3 17 ARG H 26 SITE 1 AC4 6 ASN A 3 TYR A 5 ILE A 17 ALA A 18 SITE 2 AC4 6 UMQ A 305 SQD D 201 SITE 1 AC5 8 ALA A 18 GLU A 19 THR A 22 UMQ A 304 SITE 2 AC5 8 UMQ A 307 TRP B 32 ASN C 288 SQD D 201 SITE 1 AC6 2 SER A 130 CLA B 201 SITE 1 AC7 8 LYS A 24 ARG A 207 HEM A 303 UMQ A 305 SITE 2 AC7 8 HOH A 407 ALA B 31 LEU B 36 PHE B 40 SITE 1 AC8 4 MET A 1 ALA A 2 VAL A 4 TRP A 7 SITE 1 AC9 20 ILE A 98 PHE A 102 TYR A 105 ALA A 125 SITE 2 AC9 20 VAL A 129 MYS A 306 TYR B 80 PRO B 83 SITE 3 AC9 20 VAL B 84 LEU B 108 VAL B 132 PHE B 133 SITE 4 AC9 20 GLY B 136 VAL B 139 THR B 140 OPC B 202 SITE 5 AC9 20 HOH B 301 HOH B 306 HOH B 318 UMQ F 101 SITE 1 BC1 13 TYR A 105 ILE B 87 SER B 103 VAL B 104 SITE 2 BC1 13 GLY B 107 ILE B 114 GLU B 115 ASN B 118 SITE 3 BC1 13 ARG B 126 VAL B 128 ALA B 129 CLA B 201 SITE 4 BC1 13 HOH B 304 SITE 1 BC2 20 TYR C 1 PRO C 2 TRP C 4 ALA C 5 SITE 2 BC2 20 CYS C 22 CYS C 25 HIS C 26 GLN C 60 SITE 3 BC2 20 LEU C 70 ASN C 71 VAL C 72 GLY C 73 SITE 4 BC2 20 ALA C 74 ASN C 154 GLY C 156 ARG C 157 SITE 5 BC2 20 GLY C 158 VAL C 160 TYR C 161 HOH C 440 SITE 1 BC3 11 PRO C 37 GLN C 38 SER C 39 ALA E 3 SITE 2 BC3 11 TYR E 7 GLU F 4 LEU F 11 BCR G 101 SITE 3 BC3 11 MET H 1 LEU H 12 PHE H 15 SITE 1 BC4 7 PHE A 78 VAL B 52 ASP C 251 TRP C 257 SITE 2 BC4 7 GLY D 33 ALA D 34 TYR D 36 SITE 1 BC5 2 ASN A 74 HIS C 143 SITE 1 BC6 8 UMQ A 304 UMQ A 305 TRP B 32 TYR B 38 SITE 2 BC6 8 HOH B 305 LYS C 275 ARG D 16 ASN D 20 SITE 1 BC7 6 CYS D 108 HIS D 110 LEU D 111 CYS D 126 SITE 2 BC7 6 HIS D 129 SER D 131 SITE 1 BC8 10 THR B 140 LEU B 141 ILE B 145 LEU B 149 SITE 2 BC8 10 CLA B 201 MET F 1 SER F 2 LEU F 5 SITE 3 BC8 10 VAL G 2 SER G 7 SITE 1 BC9 2 TRP F 20 ALA F 24 SITE 1 CC1 11 PHE A 33 ILE A 39 MET A 96 OPC C 302 SITE 2 CC1 11 ILE F 16 VAL G 16 ALA G 19 GLY G 20 SITE 3 CC1 11 TYR G 23 SER H 18 ILE H 19 CRYST1 159.127 159.127 364.373 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006284 0.003628 0.000000 0.00000 SCALE2 0.000000 0.007256 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002744 0.00000