HEADER HYDROLASE/HYDROLASE INHIBITOR 18-SEP-12 4H52 TITLE WILD-TYPE INFLUENZA N2 NEURAMINIDASE COVALENT COMPLEX WITH 3-FLUORO- TITLE 2 NEU5AC COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAMINIDASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: ECTODOMAIN, UNP RESIDUES 82-469; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 382827; SOURCE 4 STRAIN: A/RI/5+/1957(H2N2); SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS NEURAMINIDASE, INFLUENZA SURFACE GLYCOPROTEIN, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.J.VAVRICKA,Y.LIU,H.KIYOTA,N.SRIWILAIJAROEN,J.QI,K.TANAKA,Y.WU,Q.LI, AUTHOR 2 Y.LI,J.YAN,Y.SUZUKI,G.F.GAO REVDAT 5 08-NOV-23 4H52 1 HETSYN REVDAT 4 29-JUL-20 4H52 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 31-JUL-13 4H52 1 JRNL SITE REVDAT 2 27-FEB-13 4H52 1 TITLE REVDAT 1 20-FEB-13 4H52 0 JRNL AUTH C.J.VAVRICKA,Y.LIU,H.KIYOTA,N.SRIWILAIJAROEN,J.QI,K.TANAKA, JRNL AUTH 2 Y.WU,Q.LI,Y.LI,J.YAN,Y.SUZUKI,G.F.GAO JRNL TITL INFLUENZA NEURAMINIDASE OPERATES VIA A NUCLEOPHILIC JRNL TITL 2 MECHANISM AND CAN BE TARGETED BY COVALENT INHIBITORS JRNL REF NAT COMMUN V. 4 1491 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23422659 JRNL DOI 10.1038/NCOMMS2487 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 103136 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.153 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5156 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8261 - 5.5970 1.00 3468 168 0.2050 0.2140 REMARK 3 2 5.5970 - 4.4446 1.00 3335 200 0.1389 0.1391 REMARK 3 3 4.4446 - 3.8834 1.00 3288 189 0.1323 0.1488 REMARK 3 4 3.8834 - 3.5286 1.00 3349 161 0.1411 0.1676 REMARK 3 5 3.5286 - 3.2758 1.00 3266 195 0.1429 0.1525 REMARK 3 6 3.2758 - 3.0827 1.00 3264 190 0.1501 0.1674 REMARK 3 7 3.0827 - 2.9284 1.00 3282 176 0.1461 0.1518 REMARK 3 8 2.9284 - 2.8010 1.00 3300 144 0.1443 0.1846 REMARK 3 9 2.8010 - 2.6932 1.00 3323 134 0.1392 0.1701 REMARK 3 10 2.6932 - 2.6003 1.00 3252 196 0.1462 0.1811 REMARK 3 11 2.6003 - 2.5190 1.00 3251 176 0.1478 0.1825 REMARK 3 12 2.5190 - 2.4470 1.00 3245 172 0.1508 0.1872 REMARK 3 13 2.4470 - 2.3826 1.00 3252 174 0.1475 0.1796 REMARK 3 14 2.3826 - 2.3244 1.00 3253 206 0.1442 0.1810 REMARK 3 15 2.3244 - 2.2716 1.00 3265 187 0.1533 0.1981 REMARK 3 16 2.2716 - 2.2233 1.00 3243 167 0.1455 0.1835 REMARK 3 17 2.2233 - 2.1788 1.00 3254 170 0.1473 0.1742 REMARK 3 18 2.1788 - 2.1377 1.00 3267 150 0.1420 0.1815 REMARK 3 19 2.1377 - 2.0995 1.00 3252 162 0.1467 0.1808 REMARK 3 20 2.0995 - 2.0639 1.00 3228 200 0.1469 0.1682 REMARK 3 21 2.0639 - 2.0306 1.00 3239 191 0.1408 0.1875 REMARK 3 22 2.0306 - 1.9994 1.00 3250 167 0.1450 0.1757 REMARK 3 23 1.9994 - 1.9700 1.00 3219 178 0.1509 0.1957 REMARK 3 24 1.9700 - 1.9422 1.00 3242 176 0.1552 0.1795 REMARK 3 25 1.9422 - 1.9160 1.00 3237 166 0.1572 0.1973 REMARK 3 26 1.9160 - 1.8911 1.00 3245 174 0.1711 0.2149 REMARK 3 27 1.8911 - 1.8675 1.00 3284 147 0.1781 0.1821 REMARK 3 28 1.8675 - 1.8450 1.00 3226 149 0.1835 0.2235 REMARK 3 29 1.8450 - 1.8235 1.00 3295 168 0.1960 0.2335 REMARK 3 30 1.8235 - 1.8030 0.96 3106 123 0.2149 0.2523 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 32.11 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.40790 REMARK 3 B22 (A**2) : -4.28080 REMARK 3 B33 (A**2) : -7.12710 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6462 REMARK 3 ANGLE : 1.199 8788 REMARK 3 CHIRALITY : 0.082 964 REMARK 3 PLANARITY : 0.005 1133 REMARK 3 DIHEDRAL : 20.498 2358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 38.2757 2.8413 -19.5365 REMARK 3 T TENSOR REMARK 3 T11: 0.0624 T22: 0.0930 REMARK 3 T33: 0.0882 T12: -0.0061 REMARK 3 T13: -0.0064 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.0310 L22: 0.2201 REMARK 3 L33: 0.2788 L12: 0.0290 REMARK 3 L13: -0.0017 L23: -0.0118 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.0100 S13: 0.0004 REMARK 3 S21: -0.0685 S22: 0.0182 S23: 0.0067 REMARK 3 S31: -0.0096 S32: -0.0447 S33: -0.0014 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H52 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 103214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 3TIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE (PH 9.0), 0.1% REMARK 280 JEFFAMINE ED-2001 (PH 7.0), VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.03500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.03500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.34900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.85200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.34900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.85200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.03500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.34900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.85200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.03500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.34900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.85200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 705 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1015 O HOH A 1063 1.80 REMARK 500 O HOH B 986 O HOH B 1021 1.81 REMARK 500 O HOH B 697 O HOH B 877 1.88 REMARK 500 O HOH A 821 O HOH A 982 1.89 REMARK 500 O HOH B 885 O HOH B 951 1.92 REMARK 500 O HOH B 882 O HOH B 1001 1.94 REMARK 500 O HOH A 974 O HOH A 1045 1.94 REMARK 500 O HOH B 741 O HOH B 853 1.98 REMARK 500 O HOH A 721 O HOH A 784 1.99 REMARK 500 O HOH A 873 O HOH A 972 2.02 REMARK 500 O HOH B 789 O HOH B 853 2.02 REMARK 500 O6 NAG C 1 O HOH A 949 2.05 REMARK 500 O HOH A 917 O HOH A 920 2.06 REMARK 500 O HOH A 757 O HOH A 878 2.07 REMARK 500 O HOH A 804 O HOH A 1001 2.08 REMARK 500 O HOH B 930 O HOH B 935 2.09 REMARK 500 O HOH B 933 O HOH B 960 2.11 REMARK 500 O HOH A 966 O HOH A 1006 2.12 REMARK 500 O HOH A 857 O HOH A 986 2.14 REMARK 500 O HOH B 821 O HOH B 958 2.16 REMARK 500 O HOH A 753 O HOH B 1024 2.17 REMARK 500 O HOH A 773 O HOH A 948 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 88 58.99 -92.62 REMARK 500 ASN A 142 131.63 -172.96 REMARK 500 ASN A 200 60.60 -160.12 REMARK 500 ASN A 221 75.03 -153.67 REMARK 500 ILE A 222 70.56 59.71 REMARK 500 THR A 225 -155.04 -135.81 REMARK 500 CYS A 291 -163.60 -123.34 REMARK 500 SER A 315 -155.48 -165.24 REMARK 500 CYS A 337 -8.15 75.64 REMARK 500 GLN A 347 -175.27 71.28 REMARK 500 SER A 404 -129.48 -113.37 REMARK 500 ASN B 142 130.90 -172.62 REMARK 500 ASN B 200 59.47 -158.92 REMARK 500 ASN B 221 75.15 -154.40 REMARK 500 THR B 225 -153.96 -136.74 REMARK 500 CYS B 291 -164.09 -124.30 REMARK 500 SER B 315 -155.53 -165.25 REMARK 500 CYS B 337 -11.21 76.60 REMARK 500 GLN B 347 -176.79 75.86 REMARK 500 SER B 404 -131.41 -119.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 293 O REMARK 620 2 GLY A 297 O 77.0 REMARK 620 3 ASP A 324 OD2 92.2 86.2 REMARK 620 4 GLY A 345 O 96.2 88.6 168.8 REMARK 620 5 GLN A 347 O 97.2 168.0 104.6 81.6 REMARK 620 6 HOH A 602 O 173.4 96.5 87.0 83.8 89.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 293 O REMARK 620 2 GLY B 297 O 77.9 REMARK 620 3 ASP B 324 OD2 93.1 87.0 REMARK 620 4 GLY B 345 O 96.3 88.9 168.7 REMARK 620 5 GLN B 347 O 96.4 170.0 101.7 83.4 REMARK 620 6 HOH B 607 O 174.2 96.3 87.2 82.8 89.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H53 RELATED DB: PDB DBREF 4H52 A 82 469 UNP Q194T1 Q194T1_9INFA 82 469 DBREF 4H52 B 82 469 UNP Q194T1 Q194T1_9INFA 82 469 SEQRES 1 A 388 VAL GLU TYR ARG ASN TRP SER LYS PRO GLN CYS GLN ILE SEQRES 2 A 388 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 3 A 388 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 4 A 388 TYR VAL SER CYS ASP PRO GLY LYS CYS TYR GLN PHE ALA SEQRES 5 A 388 LEU GLY GLN GLY THR THR LEU ASP ASN LYS HIS SER ASN SEQRES 6 A 388 ASP THR VAL HIS ASP ARG ILE PRO HIS ARG THR LEU LEU SEQRES 7 A 388 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 8 A 388 GLN VAL CYS ILE ALA TRP SER SER SER SER CYS HIS ASP SEQRES 9 A 388 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASP ASP SEQRES 10 A 388 LYS ASN ALA THR ALA SER PHE ILE TYR ASP GLY ARG LEU SEQRES 11 A 388 VAL ASP SER ILE GLY SER TRP SER GLN ASN ILE LEU ARG SEQRES 12 A 388 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 13 A 388 THR VAL VAL MET THR ASP GLY SER ALA SER GLY ARG ALA SEQRES 14 A 388 ASP THR ARG ILE LEU PHE ILE GLU GLU GLY LYS ILE VAL SEQRES 15 A 388 HIS ILE SER PRO LEU SER GLY SER ALA GLN HIS ILE GLU SEQRES 16 A 388 GLU CYS SER CYS TYR PRO ARG TYR PRO GLY VAL ARG CYS SEQRES 17 A 388 ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO VAL SEQRES 18 A 388 VAL ASP ILE ASN MET GLU ASP TYR SER ILE ASP SER SER SEQRES 19 A 388 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG ASN SEQRES 20 A 388 ASP ASP SER SER SER ASN SER ASN CYS ARG ASN PRO ASN SEQRES 21 A 388 ASN GLU ARG GLY THR GLN GLY VAL LYS GLY TRP ALA PHE SEQRES 22 A 388 ASP ASN GLY ASN ASP LEU TRP MET GLY ARG THR ILE SER SEQRES 23 A 388 LYS GLU SER ARG SER GLY TYR GLU THR PHE LYS VAL ILE SEQRES 24 A 388 GLY GLY TRP SER THR PRO ASN SER LYS SER GLN VAL ASN SEQRES 25 A 388 ARG GLN VAL ILE VAL ASP ASN ASN ASN TRP SER GLY TYR SEQRES 26 A 388 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 27 A 388 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG PRO GLN SEQRES 28 A 388 GLU THR ARG VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 29 A 388 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 30 A 388 PRO ASP GLY ALA ASN ILE ASN PHE MET PRO ILE SEQRES 1 B 388 VAL GLU TYR ARG ASN TRP SER LYS PRO GLN CYS GLN ILE SEQRES 2 B 388 THR GLY PHE ALA PRO PHE SER LYS ASP ASN SER ILE ARG SEQRES 3 B 388 LEU SER ALA GLY GLY ASP ILE TRP VAL THR ARG GLU PRO SEQRES 4 B 388 TYR VAL SER CYS ASP PRO GLY LYS CYS TYR GLN PHE ALA SEQRES 5 B 388 LEU GLY GLN GLY THR THR LEU ASP ASN LYS HIS SER ASN SEQRES 6 B 388 ASP THR VAL HIS ASP ARG ILE PRO HIS ARG THR LEU LEU SEQRES 7 B 388 MET ASN GLU LEU GLY VAL PRO PHE HIS LEU GLY THR ARG SEQRES 8 B 388 GLN VAL CYS ILE ALA TRP SER SER SER SER CYS HIS ASP SEQRES 9 B 388 GLY LYS ALA TRP LEU HIS VAL CYS ILE THR GLY ASP ASP SEQRES 10 B 388 LYS ASN ALA THR ALA SER PHE ILE TYR ASP GLY ARG LEU SEQRES 11 B 388 VAL ASP SER ILE GLY SER TRP SER GLN ASN ILE LEU ARG SEQRES 12 B 388 THR GLN GLU SER GLU CYS VAL CYS ILE ASN GLY THR CYS SEQRES 13 B 388 THR VAL VAL MET THR ASP GLY SER ALA SER GLY ARG ALA SEQRES 14 B 388 ASP THR ARG ILE LEU PHE ILE GLU GLU GLY LYS ILE VAL SEQRES 15 B 388 HIS ILE SER PRO LEU SER GLY SER ALA GLN HIS ILE GLU SEQRES 16 B 388 GLU CYS SER CYS TYR PRO ARG TYR PRO GLY VAL ARG CYS SEQRES 17 B 388 ILE CYS ARG ASP ASN TRP LYS GLY SER ASN ARG PRO VAL SEQRES 18 B 388 VAL ASP ILE ASN MET GLU ASP TYR SER ILE ASP SER SER SEQRES 19 B 388 TYR VAL CYS SER GLY LEU VAL GLY ASP THR PRO ARG ASN SEQRES 20 B 388 ASP ASP SER SER SER ASN SER ASN CYS ARG ASN PRO ASN SEQRES 21 B 388 ASN GLU ARG GLY THR GLN GLY VAL LYS GLY TRP ALA PHE SEQRES 22 B 388 ASP ASN GLY ASN ASP LEU TRP MET GLY ARG THR ILE SER SEQRES 23 B 388 LYS GLU SER ARG SER GLY TYR GLU THR PHE LYS VAL ILE SEQRES 24 B 388 GLY GLY TRP SER THR PRO ASN SER LYS SER GLN VAL ASN SEQRES 25 B 388 ARG GLN VAL ILE VAL ASP ASN ASN ASN TRP SER GLY TYR SEQRES 26 B 388 SER GLY ILE PHE SER VAL GLU GLY LYS SER CYS ILE ASN SEQRES 27 B 388 ARG CYS PHE TYR VAL GLU LEU ILE ARG GLY ARG PRO GLN SEQRES 28 B 388 GLU THR ARG VAL TRP TRP THR SER ASN SER ILE VAL VAL SEQRES 29 B 388 PHE CYS GLY THR SER GLY THR TYR GLY THR GLY SER TRP SEQRES 30 B 388 PRO ASP GLY ALA ASN ILE ASN PHE MET PRO ILE MODRES 4H52 ASN A 146 ASN GLYCOSYLATION SITE MODRES 4H52 ASN B 146 ASN GLYCOSYLATION SITE MODRES 4H52 ASN A 200 ASN GLYCOSYLATION SITE MODRES 4H52 ASN B 200 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET MAN F 4 11 HET CA A 501 1 HET FSI A 508 21 HET CA B 501 1 HET FSI B 508 21 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM FSI 5-ACETAMIDO-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L- HETNAM 2 FSI MANNO-NON-2-ULOPYRANOSONIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN FSI 5-(ACETYLAMINO)-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L- HETSYN 2 FSI MANNO-NON-2-ULOPYRANOSONIC ACID; 3-FLUOROSIALIC ACID; HETSYN 3 FSI 5-ACETAMIDO-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-ALPHA-L- HETSYN 4 FSI MANNO-NON-2-ULOSONIC ACID; 5-ACETAMIDO-3,5-DIDEOXY-3- HETSYN 5 FSI FLUORO-D-ERYTHRO-L-MANNO-NON-2-ULOSONIC ACID; 5- HETSYN 6 FSI ACETAMIDO-3,5-DIDEOXY-3-FLUORO-D-ERYTHRO-MANNO-NON-2- HETSYN 7 FSI ULOSONIC ACID FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 4 BMA 2(C6 H12 O6) FORMUL 4 MAN 2(C6 H12 O6) FORMUL 7 CA 2(CA 2+) FORMUL 8 FSI 2(C11 H18 F N O9) FORMUL 11 HOH *927(H2 O) HELIX 1 1 ASN A 104 ALA A 110 1 7 HELIX 2 2 ASN A 142 HIS A 150 5 9 HELIX 3 3 ASN A 463 MET A 467 5 5 HELIX 4 4 ASN B 104 ALA B 110 1 7 HELIX 5 5 ASN B 142 HIS B 150 5 9 HELIX 6 6 ASN B 463 MET B 467 5 5 SHEET 1 A 4 GLY A 96 LYS A 102 0 SHEET 2 A 4 THR A 439 THR A 449 -1 O CYS A 447 N ALA A 98 SHEET 3 A 4 ILE A 418 GLY A 429 -1 N LEU A 426 O SER A 442 SHEET 4 A 4 SER A 407 GLU A 413 -1 N VAL A 412 O ASN A 419 SHEET 1 B 4 TRP A 115 CYS A 124 0 SHEET 2 B 4 CYS A 129 THR A 139 -1 O PHE A 132 N TYR A 121 SHEET 3 B 4 THR A 157 GLU A 162 -1 O LEU A 159 N ALA A 133 SHEET 4 B 4 ARG A 172 ILE A 176 -1 O VAL A 174 N LEU A 158 SHEET 1 C 4 SER A 179 HIS A 184 0 SHEET 2 C 4 TRP A 189 ASP A 197 -1 O VAL A 192 N SER A 181 SHEET 3 C 4 ASN A 200 TYR A 207 -1 O SER A 204 N CYS A 193 SHEET 4 C 4 ARG A 210 GLY A 216 -1 O VAL A 212 N PHE A 205 SHEET 1 D 4 VAL A 231 ILE A 233 0 SHEET 2 D 4 THR A 236 GLY A 244 -1 O THR A 238 N VAL A 231 SHEET 3 D 4 ALA A 250 GLU A 258 -1 O ILE A 257 N CYS A 237 SHEET 4 D 4 LYS A 261 PRO A 267 -1 O SER A 266 N ILE A 254 SHEET 1 E 4 GLU A 276 ARG A 283 0 SHEET 2 E 4 GLY A 286 ARG A 292 -1 O ARG A 288 N TYR A 281 SHEET 3 E 4 PRO A 301 ILE A 305 -1 O ILE A 305 N VAL A 287 SHEET 4 E 4 ILE A 312 TYR A 316 -1 O SER A 315 N VAL A 302 SHEET 1 F 4 ALA A 353 ASN A 356 0 SHEET 2 F 4 ASP A 359 ARG A 364 -1 O TRP A 361 N PHE A 354 SHEET 3 F 4 SER A 372 VAL A 379 -1 O VAL A 379 N LEU A 360 SHEET 4 F 4 GLN A 391 TRP A 403 -1 O ASN A 402 N GLY A 373 SHEET 1 G 4 GLY B 96 LYS B 102 0 SHEET 2 G 4 THR B 439 THR B 449 -1 O CYS B 447 N ALA B 98 SHEET 3 G 4 ILE B 418 GLY B 429 -1 N LEU B 426 O SER B 442 SHEET 4 G 4 SER B 407 GLU B 413 -1 N PHE B 410 O CYS B 421 SHEET 1 H 4 TRP B 115 CYS B 124 0 SHEET 2 H 4 CYS B 129 THR B 139 -1 O PHE B 132 N TYR B 121 SHEET 3 H 4 THR B 157 GLU B 162 -1 O THR B 157 N GLY B 135 SHEET 4 H 4 ARG B 172 ILE B 176 -1 O VAL B 174 N LEU B 158 SHEET 1 I 4 SER B 179 HIS B 184 0 SHEET 2 I 4 TRP B 189 ASP B 197 -1 O LEU B 190 N CYS B 183 SHEET 3 I 4 ASN B 200 TYR B 207 -1 O SER B 204 N CYS B 193 SHEET 4 I 4 ARG B 210 GLY B 216 -1 O ILE B 215 N ALA B 203 SHEET 1 J 4 VAL B 231 ILE B 233 0 SHEET 2 J 4 THR B 236 GLY B 244 -1 O THR B 236 N ILE B 233 SHEET 3 J 4 ALA B 250 GLU B 258 -1 O ILE B 257 N CYS B 237 SHEET 4 J 4 LYS B 261 PRO B 267 -1 O SER B 266 N ILE B 254 SHEET 1 K 4 GLU B 276 ARG B 283 0 SHEET 2 K 4 GLY B 286 ARG B 292 -1 O ILE B 290 N SER B 279 SHEET 3 K 4 PRO B 301 ILE B 305 -1 O ILE B 305 N VAL B 287 SHEET 4 K 4 ILE B 312 TYR B 316 -1 O ASP B 313 N ASP B 304 SHEET 1 L 4 ALA B 353 ASN B 356 0 SHEET 2 L 4 ASP B 359 ARG B 364 -1 O TRP B 361 N PHE B 354 SHEET 3 L 4 SER B 372 VAL B 379 -1 O VAL B 379 N LEU B 360 SHEET 4 L 4 GLN B 391 TRP B 403 -1 O ILE B 397 N TYR B 374 SSBOND 1 CYS A 92 CYS A 417 1555 1555 2.05 SSBOND 2 CYS A 124 CYS A 129 1555 1555 2.04 SSBOND 3 CYS A 175 CYS A 193 1555 1555 2.02 SSBOND 4 CYS A 183 CYS A 230 1555 1555 2.04 SSBOND 5 CYS A 232 CYS A 237 1555 1555 2.05 SSBOND 6 CYS A 278 CYS A 291 1555 1555 2.06 SSBOND 7 CYS A 280 CYS A 289 1555 1555 2.05 SSBOND 8 CYS A 318 CYS A 337 1555 1555 2.05 SSBOND 9 CYS A 421 CYS A 447 1555 1555 2.07 SSBOND 10 CYS B 92 CYS B 417 1555 1555 2.05 SSBOND 11 CYS B 124 CYS B 129 1555 1555 2.04 SSBOND 12 CYS B 175 CYS B 193 1555 1555 2.02 SSBOND 13 CYS B 183 CYS B 230 1555 1555 2.04 SSBOND 14 CYS B 232 CYS B 237 1555 1555 2.05 SSBOND 15 CYS B 278 CYS B 291 1555 1555 2.06 SSBOND 16 CYS B 280 CYS B 289 1555 1555 2.04 SSBOND 17 CYS B 318 CYS B 337 1555 1555 2.04 SSBOND 18 CYS B 421 CYS B 447 1555 1555 2.06 LINK ND2 ASN A 146 C1 NAG C 1 1555 1555 1.45 LINK ND2 ASN A 200 C1 NAG D 1 1555 1555 1.46 LINK OH TYR A 406 C2 FSI A 508 1555 1555 1.46 LINK ND2 ASN B 146 C1 NAG E 1 1555 1555 1.45 LINK ND2 ASN B 200 C1 NAG F 1 1555 1555 1.46 LINK OH TYR B 406 C2 FSI B 508 1555 1555 1.46 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.45 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.43 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.44 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 4 1555 1555 1.44 LINK O ASP A 293 CA CA A 501 1555 1555 2.45 LINK O GLY A 297 CA CA A 501 1555 1555 2.66 LINK OD2 ASP A 324 CA CA A 501 1555 1555 2.41 LINK O GLY A 345 CA CA A 501 1555 1555 2.57 LINK O GLN A 347 CA CA A 501 1555 1555 2.40 LINK CA CA A 501 O HOH A 602 1555 1555 2.50 LINK O ASP B 293 CA CA B 501 1555 1555 2.44 LINK O GLY B 297 CA CA B 501 1555 1555 2.57 LINK OD2 ASP B 324 CA CA B 501 1555 1555 2.42 LINK O GLY B 345 CA CA B 501 1555 1555 2.54 LINK O GLN B 347 CA CA B 501 1555 1555 2.50 LINK CA CA B 501 O HOH B 607 1555 1555 2.52 CISPEP 1 TYR A 284 PRO A 285 0 5.60 CISPEP 2 THR A 325 PRO A 326 0 5.77 CISPEP 3 ARG A 430 PRO A 431 0 4.85 CISPEP 4 TYR B 284 PRO B 285 0 7.88 CISPEP 5 THR B 325 PRO B 326 0 7.17 CISPEP 6 ARG B 430 PRO B 431 0 4.48 CRYST1 114.698 139.704 140.070 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008719 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007139 0.00000