HEADER TRANSPORT PROTEIN 18-SEP-12 4H5G TITLE CRYSTAL STRUCTURE OF AN AMINO ACID ABC TRANSPORTER SUBSTRATE-BINDING TITLE 2 PROTEIN FROM STREPTOCOCCUS PNEUMONIAE CANADA MDR_19A BOUND TO L- TITLE 3 ARGININE, FORM 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINO ACID ABC SUPERFAMILY ATP BINDING CASSETTE COMPND 3 TRANSPORTER, BINDING PROTEIN; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 637987; SOURCE 4 STRAIN: CANADA MDR_19A; SOURCE 5 GENE: HMPREF0837_11153, SPNECM_010100001092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID), NIAID, KEYWDS 2 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, ALPHA AND KEYWDS 3 BETA PROTEIN, PERIPLASMIC BINDING PROTEIN TYPE II FOLD, PUTATIVE KEYWDS 4 AMINO ACID ABC TRANSPORTER SYSTEM SUBSTRATE BINDING PROTEIN, AMINO KEYWDS 5 ACIDS, L-ARGININE, PUTATIVE MEMBRANE-ANCHORED LIPOPROTEIN, TRANSPORT KEYWDS 6 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,M.KUDRITSKA,G.MINASOV,V.YIM,A.SAVCHENKO, AUTHOR 2 W.F.ANDERSON,CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES AUTHOR 3 (CSGID) REVDAT 3 20-SEP-23 4H5G 1 REMARK SEQADV REVDAT 2 17-DEC-14 4H5G 1 REMARK REVDAT 1 03-OCT-12 4H5G 0 JRNL AUTH P.J.STOGIOS,Z.WAWRZAK,M.KUDRITSKA,G.MINASOV,V.YIM, JRNL AUTH 2 A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF AN AMINO ACID ABC TRANSPORTER JRNL TITL 2 SUBSTRATE-BINDING PROTEIN FROM STREPTOCOCCUS PNEUMONIAE JRNL TITL 3 CANADA MDR_19A BOUND TO L-ARGININE, FORM 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 91.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 54973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2672 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 92.0930 - 5.5305 1.00 3345 86 0.1828 0.1894 REMARK 3 2 5.5305 - 4.3897 1.00 3340 89 0.1398 0.1562 REMARK 3 3 4.3897 - 3.8348 1.00 3330 98 0.1223 0.1399 REMARK 3 4 3.8348 - 3.4842 1.00 3348 86 0.1341 0.1507 REMARK 3 5 3.4842 - 3.2344 1.00 3366 79 0.1399 0.1785 REMARK 3 6 3.2344 - 3.0437 1.00 3331 95 0.1542 0.1976 REMARK 3 7 3.0437 - 2.8913 1.00 3315 102 0.1523 0.2203 REMARK 3 8 2.8913 - 2.7654 1.00 3320 97 0.1561 0.1696 REMARK 3 9 2.7654 - 2.6590 1.00 3339 79 0.1509 0.1652 REMARK 3 10 2.6590 - 2.5672 1.00 3363 87 0.1500 0.1816 REMARK 3 11 2.5672 - 2.4869 1.00 3292 101 0.1420 0.1736 REMARK 3 12 2.4869 - 2.4158 1.00 3394 78 0.1512 0.1879 REMARK 3 13 2.4158 - 2.3522 1.00 3380 72 0.1591 0.1938 REMARK 3 14 2.3522 - 2.2948 1.00 3300 78 0.1529 0.2049 REMARK 3 15 2.2948 - 2.2427 1.00 3349 95 0.1569 0.1866 REMARK 3 16 2.2427 - 2.1949 1.00 3372 103 0.1479 0.2106 REMARK 3 17 2.1949 - 2.1510 1.00 3334 87 0.1538 0.1925 REMARK 3 18 2.1510 - 2.1104 1.00 3326 86 0.1539 0.1684 REMARK 3 19 2.1104 - 2.0727 1.00 3350 81 0.1492 0.1703 REMARK 3 20 2.0727 - 2.0376 1.00 3359 96 0.1689 0.2225 REMARK 3 21 2.0376 - 2.0047 1.00 3309 92 0.1671 0.2105 REMARK 3 22 2.0047 - 1.9739 1.00 3337 100 0.1764 0.2498 REMARK 3 23 1.9739 - 1.9448 1.00 3323 89 0.1900 0.2243 REMARK 3 24 1.9448 - 1.9174 1.00 3328 97 0.1891 0.2064 REMARK 3 25 1.9174 - 1.8915 1.00 3313 93 0.1844 0.2154 REMARK 3 26 1.8915 - 1.8670 1.00 3279 88 0.1962 0.2246 REMARK 3 27 1.8670 - 1.8436 1.00 3382 89 0.2022 0.2217 REMARK 3 28 1.8436 - 1.8214 1.00 3343 90 0.2077 0.2376 REMARK 3 29 1.8214 - 1.8002 1.00 3406 83 0.2243 0.2882 REMARK 3 30 1.8002 - 1.7800 1.00 3301 82 0.2292 0.2470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3874 REMARK 3 ANGLE : 1.167 5231 REMARK 3 CHIRALITY : 0.076 614 REMARK 3 PLANARITY : 0.004 687 REMARK 3 DIHEDRAL : 14.471 1465 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND RESID 30:80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3220 48.4039 35.9116 REMARK 3 T TENSOR REMARK 3 T11: 0.1575 T22: 0.1951 REMARK 3 T33: 0.1424 T12: 0.0210 REMARK 3 T13: -0.0017 T23: 0.0323 REMARK 3 L TENSOR REMARK 3 L11: 3.9231 L22: 2.1212 REMARK 3 L33: 2.9119 L12: 2.2550 REMARK 3 L13: 1.5235 L23: 1.2227 REMARK 3 S TENSOR REMARK 3 S11: 0.1743 S12: -0.2721 S13: -0.2425 REMARK 3 S21: 0.2007 S22: -0.1276 S23: -0.2109 REMARK 3 S31: 0.2565 S32: 0.0521 S33: -0.0003 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 81:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6877 47.0603 26.5312 REMARK 3 T TENSOR REMARK 3 T11: 0.1521 T22: 0.1960 REMARK 3 T33: 0.1305 T12: -0.0103 REMARK 3 T13: 0.0035 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.7679 L22: 1.7260 REMARK 3 L33: 0.6844 L12: 0.9547 REMARK 3 L13: 0.4037 L23: 0.4263 REMARK 3 S TENSOR REMARK 3 S11: -0.0363 S12: -0.0162 S13: 0.0061 REMARK 3 S21: -0.1215 S22: 0.0028 S23: 0.1808 REMARK 3 S31: 0.0130 S32: -0.1309 S33: 0.0448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 226:269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.3325 52.2645 25.5631 REMARK 3 T TENSOR REMARK 3 T11: 0.1219 T22: 0.1810 REMARK 3 T33: 0.1075 T12: 0.0049 REMARK 3 T13: 0.0098 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.3551 L22: 3.7453 REMARK 3 L33: 2.3451 L12: 0.2123 REMARK 3 L13: -0.1239 L23: 1.6198 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: 0.0374 S13: -0.0269 REMARK 3 S21: -0.0020 S22: -0.0147 S23: -0.0461 REMARK 3 S31: 0.0755 S32: 0.0082 S33: 0.0267 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 30:80 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2146 72.8782 -5.3011 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.1175 REMARK 3 T33: 0.2030 T12: -0.0110 REMARK 3 T13: -0.0329 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 2.1140 L22: 3.5861 REMARK 3 L33: 3.3479 L12: -0.4009 REMARK 3 L13: -0.9803 L23: 0.2677 REMARK 3 S TENSOR REMARK 3 S11: -0.0623 S12: 0.0755 S13: 0.1021 REMARK 3 S21: -0.1751 S22: 0.1105 S23: 0.3249 REMARK 3 S31: 0.0191 S32: -0.0513 S33: -0.0462 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN B AND RESID 81:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2170 75.8396 15.4837 REMARK 3 T TENSOR REMARK 3 T11: 0.5937 T22: 0.2885 REMARK 3 T33: 0.2482 T12: 0.1031 REMARK 3 T13: 0.1237 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 1.7050 L22: 4.3076 REMARK 3 L33: 2.3731 L12: -0.4524 REMARK 3 L13: 0.0904 L23: -0.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.1972 S12: -0.4891 S13: 0.0239 REMARK 3 S21: 1.4462 S22: 0.2766 S23: 0.3349 REMARK 3 S31: -0.1149 S32: -0.2197 S33: -0.0550 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H5G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075042. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978560 REMARK 200 MONOCHROMATOR : C(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54996 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 91.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: 1WDN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE PH 4.6, PEG 2K MME 30% (W/V), 2% TACSIMATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.01200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.01200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 91.97000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 91.97000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 31.01200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 91.97000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.01200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 49.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 91.97000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 407 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 29 REMARK 465 GLU A 270 REMARK 465 GLU A 271 REMARK 465 GLY B 29 REMARK 465 GLU B 270 REMARK 465 GLU B 271 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 50 55.42 -150.66 REMARK 500 ASP A 60 -125.12 67.90 REMARK 500 ALA A 108 45.95 -160.03 REMARK 500 LYS A 223 107.77 -54.40 REMARK 500 ASP A 226 83.36 57.41 REMARK 500 TYR B 50 54.00 -150.17 REMARK 500 ALA B 108 45.26 -161.14 REMARK 500 LEU B 146 -71.09 -65.85 REMARK 500 THR B 147 -43.92 -24.75 REMARK 500 ASP B 226 58.16 -110.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H5F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AN AMINO ACID ABC TRANSPORTER SUBSTRATE- REMARK 900 BINDING PROTEIN FROM STREPTOCOCCUS PNEUMONIAE CANADA MDR_19A BOUND REMARK 900 TO L-ARGININE, FORM 1 REMARK 900 RELATED ID: IDP91966 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ELECTRON DENSITY CLEARLY SUPPORTS HISTIDINE AT POSITION 136 REMARK 999 RATHER THAN ARGININE. HOWEVER, NO SUITABLE SEQUENCE IN THE GENOME REMARK 999 DATABASES WAS FOUND. HIS 136 IS ASSUMED TO BE A SEQUENCE MUTATION REMARK 999 IN THE GENE WE WORKED WITH, RELATIVE TO THE DATABASE SEQUENCE REMARK 999 D6ZRZ2. DBREF 4H5G A 30 271 UNP D6ZRZ2 D6ZRZ2_STRP0 30 271 DBREF 4H5G B 30 271 UNP D6ZRZ2 D6ZRZ2_STRP0 30 271 SEQADV 4H5G GLY A 29 UNP D6ZRZ2 EXPRESSION TAG SEQADV 4H5G HIS A 136 UNP D6ZRZ2 ARG 136 SEE REMARK 999 SEQADV 4H5G GLY B 29 UNP D6ZRZ2 EXPRESSION TAG SEQADV 4H5G HIS B 136 UNP D6ZRZ2 ARG 136 SEE REMARK 999 SEQRES 1 A 243 GLY GLN SER ALA VAL GLU ALA ILE LYS GLN LYS GLY LYS SEQRES 2 A 243 LEU VAL VAL ALA THR SER PRO ASP TYR ALA PRO PHE GLU SEQRES 3 A 243 PHE GLN SER LEU VAL ASP GLY LYS ASN GLN VAL VAL GLY SEQRES 4 A 243 ALA ASP ILE ASP MET ALA GLN ALA ILE ALA ASP GLU LEU SEQRES 5 A 243 GLY VAL LYS LEU GLU ILE LEU SER MET SER PHE ASP ASN SEQRES 6 A 243 VAL LEU THR SER LEU GLN THR GLY LYS ALA ASP LEU ALA SEQRES 7 A 243 VAL ALA GLY ILE SER ALA THR ASP GLU ARG LYS GLU VAL SEQRES 8 A 243 PHE ASP PHE SER ILE PRO TYR TYR GLU ASN LYS ILE SER SEQRES 9 A 243 PHE LEU VAL HIS LYS ALA ASP VAL GLU LYS TYR LYS ASP SEQRES 10 A 243 LEU THR SER LEU GLU SER ALA ASN ILE ALA ALA GLN LYS SEQRES 11 A 243 GLY THR VAL PRO GLU SER MET VAL LYS GLU GLN LEU PRO SEQRES 12 A 243 LYS ALA GLN LEU THR SER LEU THR ASN MET GLY GLU ALA SEQRES 13 A 243 VAL ASN GLU LEU GLN ALA GLY LYS ILE ASP ALA VAL HIS SEQRES 14 A 243 MET ASP GLU PRO VAL ALA LEU SER TYR ALA ALA LYS ASN SEQRES 15 A 243 ALA GLY LEU ALA VAL ALA THR VAL SER LEU LYS MET LYS SEQRES 16 A 243 ASP GLY ASP ALA ASN ALA VAL ALA LEU ARG LYS ASN SER SEQRES 17 A 243 ASP ASP LEU LYS GLU VAL VAL ASP LYS VAL ILE GLN LYS SEQRES 18 A 243 LEU LYS ASP GLU GLY THR TYR GLN SER TYR LEU GLU LYS SEQRES 19 A 243 ALA ALA SER LEU THR GLU VAL GLU GLU SEQRES 1 B 243 GLY GLN SER ALA VAL GLU ALA ILE LYS GLN LYS GLY LYS SEQRES 2 B 243 LEU VAL VAL ALA THR SER PRO ASP TYR ALA PRO PHE GLU SEQRES 3 B 243 PHE GLN SER LEU VAL ASP GLY LYS ASN GLN VAL VAL GLY SEQRES 4 B 243 ALA ASP ILE ASP MET ALA GLN ALA ILE ALA ASP GLU LEU SEQRES 5 B 243 GLY VAL LYS LEU GLU ILE LEU SER MET SER PHE ASP ASN SEQRES 6 B 243 VAL LEU THR SER LEU GLN THR GLY LYS ALA ASP LEU ALA SEQRES 7 B 243 VAL ALA GLY ILE SER ALA THR ASP GLU ARG LYS GLU VAL SEQRES 8 B 243 PHE ASP PHE SER ILE PRO TYR TYR GLU ASN LYS ILE SER SEQRES 9 B 243 PHE LEU VAL HIS LYS ALA ASP VAL GLU LYS TYR LYS ASP SEQRES 10 B 243 LEU THR SER LEU GLU SER ALA ASN ILE ALA ALA GLN LYS SEQRES 11 B 243 GLY THR VAL PRO GLU SER MET VAL LYS GLU GLN LEU PRO SEQRES 12 B 243 LYS ALA GLN LEU THR SER LEU THR ASN MET GLY GLU ALA SEQRES 13 B 243 VAL ASN GLU LEU GLN ALA GLY LYS ILE ASP ALA VAL HIS SEQRES 14 B 243 MET ASP GLU PRO VAL ALA LEU SER TYR ALA ALA LYS ASN SEQRES 15 B 243 ALA GLY LEU ALA VAL ALA THR VAL SER LEU LYS MET LYS SEQRES 16 B 243 ASP GLY ASP ALA ASN ALA VAL ALA LEU ARG LYS ASN SER SEQRES 17 B 243 ASP ASP LEU LYS GLU VAL VAL ASP LYS VAL ILE GLN LYS SEQRES 18 B 243 LEU LYS ASP GLU GLY THR TYR GLN SER TYR LEU GLU LYS SEQRES 19 B 243 ALA ALA SER LEU THR GLU VAL GLU GLU HET SO4 A 301 5 HET PEG A 302 7 HET PEG A 303 7 HET ACT A 304 4 HET ACT A 305 4 HET GOL A 306 6 HET EDO A 307 4 HET EDO A 308 4 HET EDO A 309 4 HET ARG A 310 12 HET SO4 B 301 5 HET PEG B 302 7 HET GOL B 303 6 HET EDO B 304 4 HET ARG B 305 12 HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM ACT ACETATE ION HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM ARG ARGININE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 PEG 3(C4 H10 O3) FORMUL 6 ACT 2(C2 H3 O2 1-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 9 EDO 4(C2 H6 O2) FORMUL 12 ARG 2(C6 H15 N4 O2 1+) FORMUL 18 HOH *419(H2 O) HELIX 1 1 SER A 31 GLY A 40 1 10 HELIX 2 2 GLY A 67 GLY A 81 1 15 HELIX 3 3 SER A 90 ASP A 92 5 3 HELIX 4 4 ASN A 93 THR A 100 1 8 HELIX 5 5 THR A 113 GLU A 118 1 6 HELIX 6 6 ALA A 138 VAL A 140 5 3 HELIX 7 7 ASP A 145 SER A 151 1 7 HELIX 8 8 THR A 160 LEU A 170 1 11 HELIX 9 9 ASN A 180 ALA A 190 1 11 HELIX 10 10 GLU A 200 ASN A 210 1 11 HELIX 11 11 SER A 236 GLY A 254 1 19 HELIX 12 12 GLY A 254 ALA A 264 1 11 HELIX 13 13 SER B 31 GLY B 40 1 10 HELIX 14 14 GLY B 67 GLY B 81 1 15 HELIX 15 15 SER B 90 ASP B 92 5 3 HELIX 16 16 ASN B 93 THR B 100 1 8 HELIX 17 17 THR B 113 GLU B 118 1 6 HELIX 18 18 ALA B 138 VAL B 140 5 3 HELIX 19 19 THR B 160 LEU B 170 1 11 HELIX 20 20 ASN B 180 ALA B 190 1 11 HELIX 21 21 GLU B 200 ASN B 210 1 11 HELIX 22 22 SER B 236 GLY B 254 1 19 HELIX 23 23 GLY B 254 SER B 265 1 12 SHEET 1 A 3 LYS A 83 SER A 88 0 SHEET 2 A 3 LYS A 41 THR A 46 1 N LEU A 42 O LYS A 83 SHEET 3 A 3 LEU A 105 ALA A 106 1 O LEU A 105 N ALA A 45 SHEET 1 B 2 PHE A 55 VAL A 59 0 SHEET 2 B 2 LYS A 62 VAL A 66 -1 O VAL A 66 N PHE A 55 SHEET 1 C 2 PHE A 120 PHE A 122 0 SHEET 2 C 2 ALA A 231 ARG A 233 -1 O LEU A 232 N ASP A 121 SHEET 1 D 5 GLN A 174 LEU A 178 0 SHEET 2 D 5 ASN A 153 GLN A 157 1 N ILE A 154 O THR A 176 SHEET 3 D 5 ALA A 195 ASP A 199 1 O HIS A 197 N ALA A 155 SHEET 4 D 5 ILE A 131 HIS A 136 -1 N SER A 132 O MET A 198 SHEET 5 D 5 LEU A 213 VAL A 215 -1 O ALA A 214 N VAL A 135 SHEET 1 E 3 LYS B 83 SER B 88 0 SHEET 2 E 3 LYS B 41 THR B 46 1 N LEU B 42 O LYS B 83 SHEET 3 E 3 LEU B 105 ALA B 106 1 O LEU B 105 N ALA B 45 SHEET 1 F 3 ASP B 49 TYR B 50 0 SHEET 2 F 3 GLU B 54 VAL B 59 -1 O GLU B 54 N TYR B 50 SHEET 3 F 3 LYS B 62 VAL B 66 -1 O VAL B 66 N PHE B 55 SHEET 1 G 2 ASP B 121 PHE B 122 0 SHEET 2 G 2 ALA B 231 LEU B 232 -1 O LEU B 232 N ASP B 121 SHEET 1 H 5 GLN B 174 LEU B 178 0 SHEET 2 H 5 ASN B 153 GLN B 157 1 N ILE B 154 O THR B 176 SHEET 3 H 5 ALA B 195 ASP B 199 1 O ALA B 195 N ALA B 155 SHEET 4 H 5 ILE B 131 HIS B 136 -1 N LEU B 134 O VAL B 196 SHEET 5 H 5 LEU B 213 VAL B 215 -1 O ALA B 214 N VAL B 135 CISPEP 1 ALA A 51 PRO A 52 0 11.18 CISPEP 2 ASP A 60 GLY A 61 0 12.03 CISPEP 3 ALA B 51 PRO B 52 0 10.53 CISPEP 4 ASP B 224 GLY B 225 0 -17.73 SITE 1 AC1 6 LYS A 158 LEU A 178 THR A 179 HOH A 419 SITE 2 AC1 6 HOH A 590 HOH A 602 SITE 1 AC2 4 GLY A 182 ASN A 186 GLN A 189 ASN A 210 SITE 1 AC3 3 ASP A 49 MET A 89 ASN A 180 SITE 1 AC4 2 SER A 258 LYS A 262 SITE 1 AC5 4 ARG A 233 EDO A 308 HOH A 517 HOH A 578 SITE 1 AC6 2 GLN A 99 PHE A 120 SITE 1 AC7 1 SER A 265 SITE 1 AC8 7 ALA A 32 ALA A 35 ASP A 104 ARG A 233 SITE 2 AC8 7 ACT A 305 HOH A 643 HOH A 645 SITE 1 AC9 4 GLU A 79 LYS A 245 THR B 96 HOH B 572 SITE 1 BC1 15 SER A 47 ASP A 49 TYR A 50 GLU A 54 SITE 2 BC1 15 PHE A 91 ALA A 108 GLY A 109 ILE A 110 SITE 3 BC1 15 SER A 111 ARG A 116 GLN A 157 THR A 160 SITE 4 BC1 15 VAL A 161 ASP A 199 HOH A 442 SITE 1 BC2 8 LYS A 37 LYS A 142 HOH A 642 LYS B 39 SITE 2 BC2 8 LYS B 41 VAL B 43 HOH B 498 HOH B 529 SITE 1 BC3 4 GLN A 99 GLN B 38 LYS B 39 HOH B 538 SITE 1 BC4 3 VAL B 66 LYS B 262 HOH B 456 SITE 1 BC5 15 SER B 47 ASP B 49 TYR B 50 GLU B 54 SITE 2 BC5 15 PHE B 91 ALA B 108 GLY B 109 ILE B 110 SITE 3 BC5 15 SER B 111 ARG B 116 GLN B 157 THR B 160 SITE 4 BC5 15 VAL B 161 ASP B 199 HOH B 444 CRYST1 99.600 183.940 62.024 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010040 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016123 0.00000