HEADER PROTEIN TRANSPORT 19-SEP-12 4H5Y TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA LIDA (60- TITLE 2 594) COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIDA PROTEIN, SUBSTRATE OF THE DOT/ICM SYSTEM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 60-594; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA; SOURCE 3 ORGANISM_TAXID: 446; SOURCE 4 GENE: LIDA, LPC_2349; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TWISTED BETA-HAIRPIN REPEAT, COILED-COIL, TYPE IV SECRETION SYSTEM, KEYWDS 2 RAB-BINDING, RAB1, RAB6, RAB8, PTDINS(3)P, PTDINS(4)P, MEMBRANE, KEYWDS 3 PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR X.AN,S.YE,Y.LIU,X.ZHENG,R.ZHANG REVDAT 4 28-FEB-24 4H5Y 1 SEQADV REVDAT 3 15-NOV-17 4H5Y 1 REMARK REVDAT 2 25-DEC-13 4H5Y 1 JRNL REVDAT 1 25-SEP-13 4H5Y 0 JRNL AUTH G.MENG,X.AN,S.YE,Y.LIU,W.ZHU,R.ZHANG,X.ZHENG JRNL TITL THE CRYSTAL STRUCTURE OF LIDA, A TRANSLOCATED SUBSTRATE OF JRNL TITL 2 THE LEGIONELLA PNEUMOPHILA TYPE IV SECRETION SYSTEM. JRNL REF PROTEIN CELL V. 4 897 2013 JRNL REFN ISSN 1674-800X JRNL PMID 24293259 JRNL DOI 10.1007/S13238-013-2100-7 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.2_869) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1754 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0366 - 4.9360 1.00 2757 151 0.1993 0.2320 REMARK 3 2 4.9360 - 3.9185 1.00 2647 135 0.1653 0.1992 REMARK 3 3 3.9185 - 3.4233 1.00 2595 132 0.1770 0.2183 REMARK 3 4 3.4233 - 3.1104 1.00 2602 140 0.2010 0.2664 REMARK 3 5 3.1104 - 2.8875 1.00 2556 149 0.2230 0.2825 REMARK 3 6 2.8875 - 2.7173 1.00 2576 127 0.2191 0.2593 REMARK 3 7 2.7173 - 2.5812 1.00 2548 131 0.2241 0.2811 REMARK 3 8 2.5812 - 2.4689 1.00 2545 153 0.2131 0.2909 REMARK 3 9 2.4689 - 2.3738 1.00 2543 127 0.2211 0.2561 REMARK 3 10 2.3738 - 2.2919 1.00 2544 126 0.2144 0.3155 REMARK 3 11 2.2919 - 2.2203 1.00 2523 146 0.2240 0.2808 REMARK 3 12 2.2203 - 2.1568 1.00 2578 118 0.2319 0.2644 REMARK 3 13 2.1568 - 2.1000 1.00 2536 119 0.2247 0.2726 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 36.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00910 REMARK 3 B22 (A**2) : -7.17030 REMARK 3 B33 (A**2) : 6.16120 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4347 REMARK 3 ANGLE : 0.773 5808 REMARK 3 CHIRALITY : 0.057 628 REMARK 3 PLANARITY : 0.002 751 REMARK 3 DIHEDRAL : 18.307 1719 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 60:87) REMARK 3 ORIGIN FOR THE GROUP (A): 49.3157 14.6161 62.9148 REMARK 3 T TENSOR REMARK 3 T11: 0.4004 T22: 0.2284 REMARK 3 T33: 0.2228 T12: 0.0498 REMARK 3 T13: -0.0108 T23: -0.0430 REMARK 3 L TENSOR REMARK 3 L11: 7.7858 L22: 2.7104 REMARK 3 L33: 4.5462 L12: 0.5376 REMARK 3 L13: 0.9312 L23: 2.0471 REMARK 3 S TENSOR REMARK 3 S11: -0.1671 S12: -0.7418 S13: 0.2655 REMARK 3 S21: 0.9271 S22: 0.0264 S23: 0.1199 REMARK 3 S31: -0.6846 S32: 0.0494 S33: 0.0797 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 88:129) REMARK 3 ORIGIN FOR THE GROUP (A): 65.3212 7.8460 57.4494 REMARK 3 T TENSOR REMARK 3 T11: 0.2367 T22: 0.2933 REMARK 3 T33: 0.3390 T12: -0.0164 REMARK 3 T13: -0.0391 T23: 0.0840 REMARK 3 L TENSOR REMARK 3 L11: 5.5289 L22: 1.7876 REMARK 3 L33: 2.1125 L12: -1.7109 REMARK 3 L13: 0.9484 L23: -0.6103 REMARK 3 S TENSOR REMARK 3 S11: -0.1203 S12: 0.2566 S13: 0.7935 REMARK 3 S21: -0.0745 S22: 0.1204 S23: 0.0022 REMARK 3 S31: 0.3086 S32: -0.1134 S33: -0.0305 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 130:191) REMARK 3 ORIGIN FOR THE GROUP (A): 58.2854 -2.1843 63.0844 REMARK 3 T TENSOR REMARK 3 T11: 0.2902 T22: 0.2032 REMARK 3 T33: 0.3092 T12: -0.0518 REMARK 3 T13: -0.0450 T23: 0.0744 REMARK 3 L TENSOR REMARK 3 L11: 5.4410 L22: 2.7923 REMARK 3 L33: 2.1807 L12: -3.0357 REMARK 3 L13: 1.3862 L23: -1.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.1461 S12: -0.3237 S13: -0.1854 REMARK 3 S21: 0.3065 S22: -0.1029 S23: -0.2254 REMARK 3 S31: 0.1279 S32: 0.1754 S33: -0.0247 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 192:246) REMARK 3 ORIGIN FOR THE GROUP (A): 46.8798 13.7617 44.3946 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.2568 REMARK 3 T33: 0.1618 T12: 0.0257 REMARK 3 T13: 0.0432 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 4.7092 L22: 7.1290 REMARK 3 L33: 3.5090 L12: -5.8081 REMARK 3 L13: 3.9481 L23: -5.1100 REMARK 3 S TENSOR REMARK 3 S11: -0.0778 S12: 0.0324 S13: 0.0687 REMARK 3 S21: 0.0593 S22: -0.0176 S23: -0.3406 REMARK 3 S31: 0.0255 S32: 0.1058 S33: -0.0213 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 247:289) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5373 65.7121 23.6225 REMARK 3 T TENSOR REMARK 3 T11: 0.2609 T22: 0.1752 REMARK 3 T33: 0.3944 T12: -0.0136 REMARK 3 T13: -0.1265 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 0.1332 L22: 1.9322 REMARK 3 L33: 1.3316 L12: 0.1197 REMARK 3 L13: 0.3106 L23: 0.9564 REMARK 3 S TENSOR REMARK 3 S11: -0.1231 S12: -0.1063 S13: 0.1103 REMARK 3 S21: 0.1363 S22: 0.2071 S23: -0.0428 REMARK 3 S31: 0.2200 S32: 0.1647 S33: -0.0226 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 290:318) REMARK 3 ORIGIN FOR THE GROUP (A): 40.9025 69.3149 16.0369 REMARK 3 T TENSOR REMARK 3 T11: 0.2046 T22: 0.1670 REMARK 3 T33: 0.3233 T12: -0.0393 REMARK 3 T13: -0.0773 T23: -0.0516 REMARK 3 L TENSOR REMARK 3 L11: 8.5546 L22: 4.7767 REMARK 3 L33: 8.6619 L12: -5.3477 REMARK 3 L13: -8.0278 L23: 5.6179 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.4116 S13: -0.6154 REMARK 3 S21: -0.3807 S22: -0.3505 S23: 0.2769 REMARK 3 S31: -0.3147 S32: -0.2227 S33: 0.2889 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 319:448) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2733 65.7391 25.4699 REMARK 3 T TENSOR REMARK 3 T11: 0.1869 T22: 0.1604 REMARK 3 T33: 0.2472 T12: -0.0377 REMARK 3 T13: -0.0604 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 1.8772 L22: 2.8191 REMARK 3 L33: 1.0185 L12: -1.5962 REMARK 3 L13: 0.4835 L23: -0.9798 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: -0.1041 S13: 0.1126 REMARK 3 S21: 0.0132 S22: 0.0215 S23: -0.1984 REMARK 3 S31: 0.0921 S32: -0.0765 S33: 0.0137 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 449:489) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8460 45.5738 11.0745 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1507 REMARK 3 T33: 0.1380 T12: 0.0149 REMARK 3 T13: -0.0149 T23: -0.0123 REMARK 3 L TENSOR REMARK 3 L11: 4.2996 L22: 3.6393 REMARK 3 L33: 4.7295 L12: -0.0479 REMARK 3 L13: -0.8618 L23: 1.4391 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: -0.0380 S13: -0.2325 REMARK 3 S21: -0.3836 S22: -0.0322 S23: 0.2894 REMARK 3 S31: -0.1398 S32: -0.0310 S33: 0.1984 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 490:537) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9359 36.2281 0.6704 REMARK 3 T TENSOR REMARK 3 T11: 0.2414 T22: 0.2751 REMARK 3 T33: 0.1586 T12: 0.0525 REMARK 3 T13: 0.0427 T23: 0.0101 REMARK 3 L TENSOR REMARK 3 L11: 3.0030 L22: 2.2645 REMARK 3 L33: 4.8459 L12: -1.6806 REMARK 3 L13: -3.5098 L23: 3.2149 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.1232 S13: 0.0241 REMARK 3 S21: 0.0434 S22: 0.1491 S23: -0.2250 REMARK 3 S31: 0.0015 S32: 0.4637 S33: -0.0656 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 538:594) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1936 11.5827 43.1109 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.1846 REMARK 3 T33: 0.2045 T12: 0.0190 REMARK 3 T13: -0.0413 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 1.6376 L22: 7.6576 REMARK 3 L33: 4.0062 L12: -2.6985 REMARK 3 L13: 2.0261 L23: -5.1590 REMARK 3 S TENSOR REMARK 3 S11: 0.1688 S12: 0.0143 S13: -0.2752 REMARK 3 S21: -0.1491 S22: -0.0385 S23: 0.1740 REMARK 3 S31: 0.2709 S32: 0.2095 S33: -0.1988 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H5Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075060. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 82.187 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM TRIMETHYLAMINE N-OXIDE, PH 8.0, REMARK 280 20% W/V PEG2000 MME, 1% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.77700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.18650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.23400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.18650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.77700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.23400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 25 REMARK 465 SER A 26 REMARK 465 SER A 27 REMARK 465 HIS A 28 REMARK 465 HIS A 29 REMARK 465 HIS A 30 REMARK 465 HIS A 31 REMARK 465 HIS A 32 REMARK 465 HIS A 33 REMARK 465 SER A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 465 LEU A 37 REMARK 465 VAL A 38 REMARK 465 PRO A 39 REMARK 465 ARG A 40 REMARK 465 GLY A 41 REMARK 465 SER A 42 REMARK 465 HIS A 43 REMARK 465 MET A 44 REMARK 465 ALA A 45 REMARK 465 SER A 46 REMARK 465 MET A 47 REMARK 465 THR A 48 REMARK 465 GLY A 49 REMARK 465 GLY A 50 REMARK 465 GLN A 51 REMARK 465 GLN A 52 REMARK 465 MET A 53 REMARK 465 GLY A 54 REMARK 465 ARG A 55 REMARK 465 GLY A 56 REMARK 465 SER A 57 REMARK 465 GLU A 58 REMARK 465 PHE A 59 REMARK 465 LYS A 182 REMARK 465 PRO A 183 REMARK 465 SER A 184 REMARK 465 GLN A 185 REMARK 465 GLN A 186 REMARK 465 SER A 187 REMARK 465 THR A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 846 O HOH A 936 1.86 REMARK 500 OE2 GLU A 277 O HOH A 839 1.86 REMARK 500 O HOH A 728 O HOH A 990 1.86 REMARK 500 NZ LYS A 484 O HOH A 933 1.91 REMARK 500 O HOH A 986 O HOH A 987 1.92 REMARK 500 O HOH A 945 O HOH A 984 1.95 REMARK 500 O HOH A 955 O HOH A 979 1.96 REMARK 500 O HOH A 825 O HOH A 945 2.00 REMARK 500 O THR A 255 O HOH A 803 2.00 REMARK 500 O HOH A 775 O HOH A 784 2.01 REMARK 500 O HOH A 642 O HOH A 881 2.04 REMARK 500 ND2 ASN A 170 O HOH A 952 2.05 REMARK 500 O HOH A 730 O HOH A 925 2.05 REMARK 500 NZ LYS A 519 O HOH A 991 2.05 REMARK 500 O HOH A 832 O HOH A 1015 2.09 REMARK 500 O LYS A 287 O HOH A 796 2.10 REMARK 500 OE1 GLU A 171 O HOH A 970 2.12 REMARK 500 OE1 GLN A 77 O HOH A 948 2.12 REMARK 500 OD2 ASP A 498 O HOH A 831 2.12 REMARK 500 OH TYR A 486 O HOH A 862 2.12 REMARK 500 O HOH A 838 O HOH A 899 2.13 REMARK 500 O HOH A 940 O HOH A 992 2.16 REMARK 500 OE1 GLU A 204 O HOH A 939 2.19 REMARK 500 OE2 GLU A 570 O HOH A 1001 2.19 REMARK 500 NZ LYS A 490 O HOH A 740 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 739 O HOH A 781 3755 2.02 REMARK 500 NZ LYS A 426 O HOH A 981 3645 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 74 58.32 -113.71 REMARK 500 ALA A 78 -153.40 -131.25 REMARK 500 LYS A 79 -36.07 177.62 REMARK 500 GLU A 80 -42.83 62.20 REMARK 500 LYS A 82 26.53 35.01 REMARK 500 ASN A 325 -167.56 -79.41 REMARK 500 ASN A 456 -168.33 -75.49 REMARK 500 LEU A 481 -88.77 -103.10 REMARK 500 THR A 534 106.99 -53.54 REMARK 500 ASN A 593 -104.52 131.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 4H5Y A 60 594 UNP A5IFX1 A5IFX1_LEGPC 60 594 SEQADV 4H5Y GLY A 25 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 26 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 27 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 28 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 29 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 30 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 31 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 32 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 33 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 34 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 35 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 36 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y LEU A 37 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y VAL A 38 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y PRO A 39 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y ARG A 40 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 41 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 42 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y HIS A 43 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y MET A 44 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y ALA A 45 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 46 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y MET A 47 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y THR A 48 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 49 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 50 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLN A 51 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLN A 52 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y MET A 53 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 54 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y ARG A 55 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLY A 56 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y SER A 57 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y GLU A 58 UNP A5IFX1 EXPRESSION TAG SEQADV 4H5Y PHE A 59 UNP A5IFX1 EXPRESSION TAG SEQRES 1 A 570 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 570 VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY GLY SEQRES 3 A 570 GLN GLN MET GLY ARG GLY SER GLU PHE PRO PHE LYS THR SEQRES 4 A 570 SER PHE GLU LYS TRP ILE GLU SER SER LEU LEU ASP PRO SEQRES 5 A 570 GLN ALA LYS GLU ASP LYS GLY SER THR ILE ASN LEU GLY SEQRES 6 A 570 ARG GLU GLY LEU LYS ASN ALA SER GLN VAL LYS LYS PHE SEQRES 7 A 570 LEU LEU SER PRO ALA GLY LYS ASP VAL ILE ALA GLU LEU SEQRES 8 A 570 GLY ALA GLN MET ALA LEU GLN ARG ASN ILE ASN LEU GLN SEQRES 9 A 570 ASN GLN GLN ASP ARG MET GLU HIS GLU LEU PHE LYS ARG SEQRES 10 A 570 ARG LEU MET ALA ALA LEU PHE LEU TRP TYR LEU SER LYS SEQRES 11 A 570 LYS SER HIS ALA ALA GLU LYS VAL LYS GLU ILE ILE ARG SEQRES 12 A 570 GLU TYR ASN GLU LYS ALA ILE LYS ASN ALA GLU LYS ALA SEQRES 13 A 570 SER LYS PRO SER GLN GLN SER THR SER SER THR SER GLN SEQRES 14 A 570 ALA ASP LYS GLU ILE GLN LYS MET LEU ASP GLU TYR GLU SEQRES 15 A 570 GLN ALA ILE LYS ARG ALA GLN GLU ASN ILE LYS LYS GLY SEQRES 16 A 570 GLU GLU LEU GLU LYS LYS LEU ASP LYS LEU GLU ARG GLN SEQRES 17 A 570 GLY LYS ASP LEU GLU ASP LYS TYR LYS THR TYR GLU GLU SEQRES 18 A 570 ASN LEU GLU GLY PHE GLU LYS LEU LEU THR ASP SER GLU SEQRES 19 A 570 GLU LEU SER LEU SER GLU ILE ASN GLU LYS MET LYS ALA SEQRES 20 A 570 PHE SER LYS ASP SER GLU LYS LEU THR GLN LEU MET GLU SEQRES 21 A 570 LYS HIS LYS GLY ASP GLU LYS THR VAL GLN SER LEU GLN SEQRES 22 A 570 ARG GLU HIS HIS ASP ILE LYS ALA LYS LEU ALA ASN LEU SEQRES 23 A 570 GLN VAL LEU HIS ASP ALA HIS THR GLY LYS LYS SER TYR SEQRES 24 A 570 VAL ASN GLU LYS GLY ASN PRO VAL SER SER LEU LYS ASP SEQRES 25 A 570 ALA HIS LEU ALA ILE ASN LYS ASP GLN GLU VAL VAL GLU SEQRES 26 A 570 HIS LYS GLY GLN PHE TYR LEU LEU GLN LYS GLY GLN TRP SEQRES 27 A 570 ASP ALA ILE LYS ASN ASP PRO ALA ALA LEU GLU LYS ALA SEQRES 28 A 570 GLN LYS ASP TYR SER GLN SER LYS HIS ASP LEU ALA THR SEQRES 29 A 570 ILE LYS MET GLU ALA LEU ILE HIS LYS LEU SER LEU GLU SEQRES 30 A 570 MET GLU LYS GLN LEU GLU THR ILE ASN ASP LEU ILE MET SEQRES 31 A 570 SER THR ASP PRO LYS GLU ASN GLU GLU ALA THR LYS LEU SEQRES 32 A 570 LEU HIS LYS HIS ASN GLY LEU ASN LEU LYS LEU ALA ASN SEQRES 33 A 570 LEU GLN ASP MET LEU ALA VAL HIS ARG LYS GLU LYS SER SEQRES 34 A 570 PHE PHE ASN GLU LYS GLY GLU LYS VAL THR SER LEU ASN SEQRES 35 A 570 ASP ALA HIS TYR VAL ILE GLY LYS ASP GLN GLN LEU PHE SEQRES 36 A 570 ASN LEU GLY GLY LYS PHE TYR PRO ILE HIS LYS GLU GLN SEQRES 37 A 570 LYS ILE LEU GLU LYS ASP GLY LYS PHE TYR LEU LEU LYS SEQRES 38 A 570 GLN GLY GLU ASP TRP GLU SER ILE LYS ASP SER PRO GLU SEQRES 39 A 570 LYS GLN LYS LYS ALA GLU HIS ASP PHE HIS LYS LEU GLN SEQRES 40 A 570 TYR GLU THR PRO MET THR VAL LYS LYS LEU VAL HIS HIS SEQRES 41 A 570 ASN LYS GLY LEU GLU THR THR ILE HIS LYS GLU ARG ILE SEQRES 42 A 570 GLU GLU THR LYS GLN GLN LEU GLU ASP ASN GLY LYS GLU SEQRES 43 A 570 LYS ILE GLU ILE ALA ASN ASN ILE SER LYS LEU GLN SER SEQRES 44 A 570 THR VAL GLY VAL ALA LEU ASN GLN LEU ASN GLN FORMUL 2 HOH *422(H2 O) HELIX 1 1 THR A 63 LEU A 73 1 11 HELIX 2 2 ASN A 87 GLY A 92 5 6 HELIX 3 3 ASN A 95 LEU A 104 1 10 HELIX 4 4 GLY A 116 ILE A 125 1 10 HELIX 5 5 ASN A 129 LYS A 154 1 26 HELIX 6 6 HIS A 157 SER A 181 1 25 HELIX 7 7 THR A 191 GLU A 245 1 55 HELIX 8 8 GLY A 249 ASP A 256 1 8 HELIX 9 9 SER A 261 HIS A 286 1 26 HELIX 10 10 ASP A 289 THR A 318 1 30 HELIX 11 11 SER A 333 ALA A 337 5 5 HELIX 12 12 GLN A 361 LYS A 366 1 6 HELIX 13 13 ASP A 368 MET A 414 1 47 HELIX 14 14 ASP A 417 ARG A 449 1 33 HELIX 15 15 SER A 464 ALA A 468 5 5 HELIX 16 16 ASP A 509 LYS A 514 1 6 HELIX 17 17 SER A 516 LYS A 529 1 14 HELIX 18 18 LEU A 530 THR A 534 5 5 HELIX 19 19 THR A 537 ASN A 593 1 57 SHEET 1 A 2 LYS A 321 VAL A 324 0 SHEET 2 A 2 LEU A 339 ASN A 342 -1 O LEU A 339 N VAL A 324 SHEET 1 B 2 GLN A 345 HIS A 350 0 SHEET 2 B 2 GLN A 353 GLN A 358 -1 O GLN A 353 N HIS A 350 SHEET 1 C 3 LYS A 461 VAL A 462 0 SHEET 2 C 3 LYS A 452 PHE A 455 -1 N PHE A 454 O VAL A 462 SHEET 3 C 3 TYR A 470 GLY A 473 -1 N TYR A 470 O PHE A 455 SHEET 1 D 2 GLN A 476 ASN A 480 0 SHEET 2 D 2 PHE A 485 HIS A 489 -1 O TYR A 486 N PHE A 479 SHEET 1 E 2 GLN A 492 LYS A 497 0 SHEET 2 E 2 LYS A 500 LYS A 505 -1 O TYR A 502 N LEU A 495 CRYST1 55.554 64.468 164.373 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006084 0.00000