HEADER TRANSFERASE 19-SEP-12 4H65 TITLE CRYSTAL STRUCTURE OF SEMET DERIVATIVE OF HMP SYNTHASE THI5 FROM S. TITLE 2 CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIMIDINE PRECURSOR BIOSYNTHESIS ENZYME THI5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HMP SYNTHASE THI5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: THI5, YFL058W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HMP-P SYNTHASE, THI5-PLP COMPLEX, PLP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.C.COQUILLE,C.ROUX,T.FITZPATRICK,S.THORE REVDAT 3 23-JAN-13 4H65 1 JRNL REVDAT 2 24-OCT-12 4H65 1 JRNL REVDAT 1 17-OCT-12 4H65 0 JRNL AUTH S.COQUILLE,C.ROUX,T.B.FITZPATRICK,S.THORE JRNL TITL THE LAST PIECE IN THE VITAMIN B1 BIOSYNTHESIS PUZZLE: JRNL TITL 2 STRUCTURAL AND FUNCTIONAL INSIGHT INTO YEAST JRNL TITL 3 4-AMINO-5-HYDROXYMETHYL-2-METHYLPYRIMIDINE PHOSPHATE (HMP-P) JRNL TITL 4 SYNTHASE. JRNL REF J.BIOL.CHEM. V. 287 42333 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 23048037 JRNL DOI 10.1074/JBC.M112.397240 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 24535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2011 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9982 - 7.4734 1.00 1580 146 0.2041 0.2223 REMARK 3 2 7.4734 - 5.9841 1.00 1577 146 0.2136 0.2668 REMARK 3 3 5.9841 - 5.2433 1.00 1596 138 0.2189 0.2901 REMARK 3 4 5.2433 - 4.7710 1.00 1593 139 0.1656 0.2337 REMARK 3 5 4.7710 - 4.4330 1.00 1571 142 0.1647 0.1775 REMARK 3 6 4.4330 - 4.1742 1.00 1586 135 0.1602 0.2160 REMARK 3 7 4.1742 - 3.9668 1.00 1605 141 0.1689 0.1774 REMARK 3 8 3.9668 - 3.7954 1.00 1580 145 0.1890 0.1988 REMARK 3 9 3.7954 - 3.6502 1.00 1565 140 0.1936 0.3125 REMARK 3 10 3.6502 - 3.5249 1.00 1586 142 0.2160 0.2515 REMARK 3 11 3.5249 - 3.4152 1.00 1570 140 0.2171 0.2657 REMARK 3 12 3.4152 - 3.3181 1.00 1617 146 0.2114 0.2526 REMARK 3 13 3.3181 - 3.2311 1.00 1581 142 0.2331 0.2658 REMARK 3 14 3.2311 - 3.1526 1.00 1597 137 0.2512 0.3117 REMARK 3 15 3.1526 - 3.0812 1.00 1558 142 0.2604 0.3444 REMARK 3 16 3.0812 - 3.0158 1.00 1599 142 0.2588 0.2899 REMARK 3 17 3.0158 - 2.9557 1.00 1601 144 0.2709 0.3342 REMARK 3 18 2.9557 - 2.9001 1.00 1567 140 0.2614 0.3313 REMARK 3 19 2.9001 - 2.8484 1.00 1579 142 0.2687 0.3233 REMARK 3 20 2.8484 - 2.8003 1.00 1606 148 0.2892 0.3314 REMARK 3 21 2.8003 - 2.7552 1.00 1565 138 0.2795 0.3180 REMARK 3 22 2.7552 - 2.7129 1.00 1558 141 0.2998 0.3118 REMARK 3 23 2.7129 - 2.6731 1.00 1616 143 0.2995 0.3755 REMARK 3 24 2.6731 - 2.6356 1.00 1591 143 0.2988 0.3706 REMARK 3 25 2.6356 - 2.6000 1.00 1539 134 0.3152 0.3844 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.26 REMARK 3 B_SOL : 12.06 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.76090 REMARK 3 B22 (A**2) : 38.97290 REMARK 3 B33 (A**2) : 9.75060 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4714 REMARK 3 ANGLE : 1.312 6371 REMARK 3 CHIRALITY : 0.086 693 REMARK 3 PLANARITY : 0.007 806 REMARK 3 DIHEDRAL : 15.119 1756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H65 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-12. REMARK 100 THE RCSB ID CODE IS RCSB075067. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97795 REMARK 200 MONOCHROMATOR : BARTELS MONOCHROMATOR WITH DUAL REMARK 200 CHANNEL CUT CRYSTALS (DCCM) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24539 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.370 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.1400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 19.39 REMARK 200 R MERGE FOR SHELL (I) : 1.29300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM THIOCYANATE, 0.1 M BIS REMARK 280 -TRIS, PH 5.7, 27% PEG3350, 10% DODECYL-BETA-D-MALTOSIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.22000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.05000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.60500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.05000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.22000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.60500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -2.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 SER A 2 REMARK 465 THR A 3 REMARK 465 GLN A 121 REMARK 465 ILE A 122 REMARK 465 ASP A 123 REMARK 465 GLU A 124 REMARK 465 LEU A 125 REMARK 465 THR A 126 REMARK 465 LYS A 127 REMARK 465 HIS A 128 REMARK 465 TYR A 129 REMARK 465 GLY A 130 REMARK 465 MSE A 131 REMARK 465 LYS A 189 REMARK 465 LEU A 190 REMARK 465 ALA A 191 REMARK 465 CYS A 192 REMARK 465 LEU A 193 REMARK 465 GLY A 194 REMARK 465 CYS A 195 REMARK 465 ALA A 337 REMARK 465 LEU A 338 REMARK 465 PRO A 339 REMARK 465 ALA A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 465 HIS A 346 REMARK 465 MSE B 1 REMARK 465 SER B 2 REMARK 465 GLY B 90 REMARK 465 VAL B 91 REMARK 465 LEU B 92 REMARK 465 TYR B 93 REMARK 465 LEU B 94 REMARK 465 LYS B 95 REMARK 465 GLY B 96 REMARK 465 SER B 97 REMARK 465 GLY B 98 REMARK 465 ILE B 99 REMARK 465 LYS B 107 REMARK 465 GLY B 108 REMARK 465 LYS B 109 REMARK 465 PHE B 117 REMARK 465 GLY B 118 REMARK 465 LYS B 119 REMARK 465 ILE B 120 REMARK 465 GLN B 121 REMARK 465 ILE B 122 REMARK 465 ASP B 123 REMARK 465 GLU B 124 REMARK 465 LEU B 125 REMARK 465 THR B 126 REMARK 465 LYS B 127 REMARK 465 HIS B 128 REMARK 465 TYR B 129 REMARK 465 GLY B 130 REMARK 465 MSE B 131 REMARK 465 LYS B 132 REMARK 465 PRO B 133 REMARK 465 GLU B 134 REMARK 465 ASP B 135 REMARK 465 TYR B 136 REMARK 465 CYS B 192 REMARK 465 LEU B 193 REMARK 465 GLY B 194 REMARK 465 CYS B 195 REMARK 465 CYS B 196 REMARK 465 CYS B 197 REMARK 465 GLU B 308 REMARK 465 GLU B 309 REMARK 465 VAL B 310 REMARK 465 SER B 311 REMARK 465 ASP B 312 REMARK 465 PRO B 313 REMARK 465 LEU B 314 REMARK 465 GLU B 315 REMARK 465 ALA B 316 REMARK 465 THR B 317 REMARK 465 ARG B 318 REMARK 465 LEU B 319 REMARK 465 MSE B 320 REMARK 465 ALA B 321 REMARK 465 ILE B 322 REMARK 465 HIS B 323 REMARK 465 GLN B 324 REMARK 465 GLU B 325 REMARK 465 LYS B 326 REMARK 465 CYS B 327 REMARK 465 ARG B 328 REMARK 465 GLN B 329 REMARK 465 GLU B 330 REMARK 465 GLY B 331 REMARK 465 THR B 332 REMARK 465 PHE B 333 REMARK 465 LYS B 334 REMARK 465 ARG B 335 REMARK 465 LEU B 336 REMARK 465 ALA B 337 REMARK 465 LEU B 338 REMARK 465 PRO B 339 REMARK 465 ALA B 340 REMARK 465 HIS B 341 REMARK 465 HIS B 342 REMARK 465 HIS B 343 REMARK 465 HIS B 344 REMARK 465 HIS B 345 REMARK 465 HIS B 346 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 100 OG1 CG2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 ASP B 102 CG OD1 OD2 REMARK 470 PHE B 103 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 104 CG CD OE1 NE2 REMARK 470 SER B 105 OG REMARK 470 LEU B 106 CG CD1 CD2 REMARK 470 LYS B 110 CG CD CE NZ REMARK 470 THR B 137 OG1 CG2 REMARK 470 VAL B 139 CG1 CG2 REMARK 470 ARG B 140 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 218 O HOH B 412 1.97 REMARK 500 N LYS B 222 O HOH B 412 2.07 REMARK 500 O LEU A 94 OG SER A 97 2.08 REMARK 500 N GLY B 112 O HOH B 411 2.10 REMARK 500 N ALA B 156 O HOH B 413 2.13 REMARK 500 O ALA B 156 O HOH B 411 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 452 O HOH B 445 2564 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 196 CB - CA - C ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 12 174.10 179.43 REMARK 500 PRO A 76 96.05 -60.63 REMARK 500 MSE A 163 -74.38 -118.90 REMARK 500 ASN A 296 55.62 -92.36 REMARK 500 PRO B 76 82.41 -65.60 REMARK 500 GLU B 101 -169.79 -72.66 REMARK 500 PHE B 103 -157.61 -110.73 REMARK 500 MSE B 163 -78.38 -110.02 REMARK 500 SER B 180 0.23 -68.76 REMARK 500 ARG B 186 -1.13 71.62 REMARK 500 ASN B 213 40.33 -147.53 REMARK 500 LYS B 246 72.83 -116.35 REMARK 500 GLN B 248 0.22 -64.79 REMARK 500 LEU B 269 -4.54 73.90 REMARK 500 THR B 298 139.64 -172.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 435 DISTANCE = 5.40 ANGSTROMS REMARK 525 HOH A 440 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B 429 DISTANCE = 5.06 ANGSTROMS REMARK 525 HOH B 431 DISTANCE = 10.02 ANGSTROMS REMARK 525 HOH B 432 DISTANCE = 9.22 ANGSTROMS REMARK 525 HOH B 433 DISTANCE = 7.09 ANGSTROMS REMARK 525 HOH B 434 DISTANCE = 9.34 ANGSTROMS REMARK 525 HOH B 435 DISTANCE = 11.00 ANGSTROMS REMARK 525 HOH B 436 DISTANCE = 9.52 ANGSTROMS REMARK 525 HOH B 437 DISTANCE = 6.33 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H67 RELATED DB: PDB REMARK 900 RELATED ID: 4H6D RELATED DB: PDB DBREF 4H65 A 1 340 UNP P43534 THI5_YEAST 1 340 DBREF 4H65 B 1 340 UNP P43534 THI5_YEAST 1 340 SEQADV 4H65 SER A 240 UNP P43534 LYS 240 ENGINEERED MUTATION SEQADV 4H65 GLY A 241 UNP P43534 GLU 241 ENGINEERED MUTATION SEQADV 4H65 THR A 317 UNP P43534 GLN 317 ENGINEERED MUTATION SEQADV 4H65 HIS A 341 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS A 342 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS A 343 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS A 344 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS A 345 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS A 346 UNP P43534 EXPRESSION TAG SEQADV 4H65 SER B 240 UNP P43534 LYS 240 ENGINEERED MUTATION SEQADV 4H65 GLY B 241 UNP P43534 GLU 241 ENGINEERED MUTATION SEQADV 4H65 THR B 317 UNP P43534 GLN 317 ENGINEERED MUTATION SEQADV 4H65 HIS B 341 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS B 342 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS B 343 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS B 344 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS B 345 UNP P43534 EXPRESSION TAG SEQADV 4H65 HIS B 346 UNP P43534 EXPRESSION TAG SEQRES 1 A 346 MSE SER THR ASP LYS ILE THR PHE LEU LEU ASN TRP GLN SEQRES 2 A 346 PRO THR PRO TYR HIS ILE PRO ILE PHE LEU ALA GLN THR SEQRES 3 A 346 LYS GLY TYR PHE LYS GLU GLN GLY LEU ASP MSE ALA ILE SEQRES 4 A 346 LEU GLU PRO THR ASN PRO SER ASP VAL THR GLU LEU ILE SEQRES 5 A 346 GLY SER GLY LYS VAL ASP MSE GLY LEU LYS ALA MSE ILE SEQRES 6 A 346 HIS THR LEU ALA ALA LYS ALA ARG GLY PHE PRO VAL THR SEQRES 7 A 346 SER VAL ALA SER LEU LEU ASP GLU PRO PHE THR GLY VAL SEQRES 8 A 346 LEU TYR LEU LYS GLY SER GLY ILE THR GLU ASP PHE GLN SEQRES 9 A 346 SER LEU LYS GLY LYS LYS ILE GLY TYR VAL GLY GLU PHE SEQRES 10 A 346 GLY LYS ILE GLN ILE ASP GLU LEU THR LYS HIS TYR GLY SEQRES 11 A 346 MSE LYS PRO GLU ASP TYR THR ALA VAL ARG CYS GLY MSE SEQRES 12 A 346 ASN VAL ALA LYS TYR ILE ILE GLU GLY LYS ILE ASP ALA SEQRES 13 A 346 GLY ILE GLY ILE GLU CYS MSE GLN GLN VAL GLU LEU GLU SEQRES 14 A 346 GLU TYR LEU ALA LYS GLN GLY ARG PRO ALA SER ASP ALA SEQRES 15 A 346 LYS MSE LEU ARG ILE ASP LYS LEU ALA CYS LEU GLY CYS SEQRES 16 A 346 CYS CYS PHE CYS THR VAL LEU TYR ILE CYS ASN ASP GLU SEQRES 17 A 346 PHE LEU LYS LYS ASN PRO GLU LYS VAL ARG LYS PHE LEU SEQRES 18 A 346 LYS ALA ILE LYS LYS ALA THR ASP TYR VAL LEU ALA ASP SEQRES 19 A 346 PRO VAL LYS ALA TRP SER GLY TYR ILE ASP PHE LYS PRO SEQRES 20 A 346 GLN LEU ASN ASN ASP LEU SER TYR LYS GLN TYR GLN ARG SEQRES 21 A 346 CYS TYR ALA TYR PHE SER SER SER LEU TYR ASN VAL HIS SEQRES 22 A 346 ARG ASP TRP LYS LYS VAL THR GLY TYR GLY LYS ARG LEU SEQRES 23 A 346 ALA ILE LEU PRO PRO ASP TYR VAL SER ASN TYR THR ASN SEQRES 24 A 346 GLU TYR LEU SER TRP PRO GLU PRO GLU GLU VAL SER ASP SEQRES 25 A 346 PRO LEU GLU ALA THR ARG LEU MSE ALA ILE HIS GLN GLU SEQRES 26 A 346 LYS CYS ARG GLN GLU GLY THR PHE LYS ARG LEU ALA LEU SEQRES 27 A 346 PRO ALA HIS HIS HIS HIS HIS HIS SEQRES 1 B 346 MSE SER THR ASP LYS ILE THR PHE LEU LEU ASN TRP GLN SEQRES 2 B 346 PRO THR PRO TYR HIS ILE PRO ILE PHE LEU ALA GLN THR SEQRES 3 B 346 LYS GLY TYR PHE LYS GLU GLN GLY LEU ASP MSE ALA ILE SEQRES 4 B 346 LEU GLU PRO THR ASN PRO SER ASP VAL THR GLU LEU ILE SEQRES 5 B 346 GLY SER GLY LYS VAL ASP MSE GLY LEU LYS ALA MSE ILE SEQRES 6 B 346 HIS THR LEU ALA ALA LYS ALA ARG GLY PHE PRO VAL THR SEQRES 7 B 346 SER VAL ALA SER LEU LEU ASP GLU PRO PHE THR GLY VAL SEQRES 8 B 346 LEU TYR LEU LYS GLY SER GLY ILE THR GLU ASP PHE GLN SEQRES 9 B 346 SER LEU LYS GLY LYS LYS ILE GLY TYR VAL GLY GLU PHE SEQRES 10 B 346 GLY LYS ILE GLN ILE ASP GLU LEU THR LYS HIS TYR GLY SEQRES 11 B 346 MSE LYS PRO GLU ASP TYR THR ALA VAL ARG CYS GLY MSE SEQRES 12 B 346 ASN VAL ALA LYS TYR ILE ILE GLU GLY LYS ILE ASP ALA SEQRES 13 B 346 GLY ILE GLY ILE GLU CYS MSE GLN GLN VAL GLU LEU GLU SEQRES 14 B 346 GLU TYR LEU ALA LYS GLN GLY ARG PRO ALA SER ASP ALA SEQRES 15 B 346 LYS MSE LEU ARG ILE ASP LYS LEU ALA CYS LEU GLY CYS SEQRES 16 B 346 CYS CYS PHE CYS THR VAL LEU TYR ILE CYS ASN ASP GLU SEQRES 17 B 346 PHE LEU LYS LYS ASN PRO GLU LYS VAL ARG LYS PHE LEU SEQRES 18 B 346 LYS ALA ILE LYS LYS ALA THR ASP TYR VAL LEU ALA ASP SEQRES 19 B 346 PRO VAL LYS ALA TRP SER GLY TYR ILE ASP PHE LYS PRO SEQRES 20 B 346 GLN LEU ASN ASN ASP LEU SER TYR LYS GLN TYR GLN ARG SEQRES 21 B 346 CYS TYR ALA TYR PHE SER SER SER LEU TYR ASN VAL HIS SEQRES 22 B 346 ARG ASP TRP LYS LYS VAL THR GLY TYR GLY LYS ARG LEU SEQRES 23 B 346 ALA ILE LEU PRO PRO ASP TYR VAL SER ASN TYR THR ASN SEQRES 24 B 346 GLU TYR LEU SER TRP PRO GLU PRO GLU GLU VAL SER ASP SEQRES 25 B 346 PRO LEU GLU ALA THR ARG LEU MSE ALA ILE HIS GLN GLU SEQRES 26 B 346 LYS CYS ARG GLN GLU GLY THR PHE LYS ARG LEU ALA LEU SEQRES 27 B 346 PRO ALA HIS HIS HIS HIS HIS HIS MODRES 4H65 MSE A 37 MET SELENOMETHIONINE MODRES 4H65 MSE A 59 MET SELENOMETHIONINE MODRES 4H65 MSE A 64 MET SELENOMETHIONINE MODRES 4H65 MSE A 143 MET SELENOMETHIONINE MODRES 4H65 MSE A 163 MET SELENOMETHIONINE MODRES 4H65 MSE A 184 MET SELENOMETHIONINE MODRES 4H65 MSE A 320 MET SELENOMETHIONINE MODRES 4H65 MSE B 37 MET SELENOMETHIONINE MODRES 4H65 MSE B 59 MET SELENOMETHIONINE MODRES 4H65 MSE B 64 MET SELENOMETHIONINE MODRES 4H65 MSE B 143 MET SELENOMETHIONINE MODRES 4H65 MSE B 163 MET SELENOMETHIONINE MODRES 4H65 MSE B 184 MET SELENOMETHIONINE HET MSE A 37 8 HET MSE A 59 8 HET MSE A 64 8 HET MSE A 143 8 HET MSE A 163 8 HET MSE A 184 8 HET MSE A 320 8 HET MSE B 37 8 HET MSE B 59 8 HET MSE B 64 8 HET MSE B 143 8 HET MSE B 163 8 HET MSE B 184 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 13(C5 H11 N O2 SE) FORMUL 3 HOH *109(H2 O) HELIX 1 1 THR A 15 TYR A 17 5 3 HELIX 2 2 HIS A 18 LYS A 27 1 10 HELIX 3 3 GLY A 28 GLN A 33 1 6 HELIX 4 4 ASN A 44 SER A 46 5 3 HELIX 5 5 ASP A 47 GLY A 55 1 9 HELIX 6 6 MSE A 64 ALA A 72 1 9 HELIX 7 7 ASP A 102 LYS A 107 5 6 HELIX 8 8 ASN A 144 GLU A 151 1 8 HELIX 9 9 MSE A 163 GLN A 175 1 13 HELIX 10 10 PRO A 178 SER A 180 5 3 HELIX 11 11 ASP A 207 ASN A 213 1 7 HELIX 12 12 ASN A 213 ASP A 234 1 22 HELIX 13 13 ASP A 234 LYS A 246 1 13 HELIX 14 14 PRO A 247 ASN A 250 5 4 HELIX 15 15 ASN A 251 TYR A 262 1 12 HELIX 16 16 VAL A 272 LEU A 286 1 15 HELIX 17 17 LEU A 314 GLY A 331 1 18 HELIX 18 18 THR B 15 TYR B 17 5 3 HELIX 19 19 HIS B 18 LYS B 27 1 10 HELIX 20 20 GLY B 28 GLN B 33 1 6 HELIX 21 21 SER B 46 SER B 54 1 9 HELIX 22 22 MSE B 64 ALA B 72 1 9 HELIX 23 23 ASN B 144 GLU B 151 1 8 HELIX 24 24 MSE B 163 GLN B 175 1 13 HELIX 25 25 PRO B 178 ALA B 182 5 5 HELIX 26 26 ASP B 207 LYS B 212 1 6 HELIX 27 27 ASN B 213 ASP B 234 1 22 HELIX 28 28 ASP B 234 LYS B 246 1 13 HELIX 29 29 PRO B 247 ASN B 250 5 4 HELIX 30 30 ASN B 251 TYR B 262 1 12 HELIX 31 31 ALA B 263 PHE B 265 5 3 HELIX 32 32 VAL B 272 LEU B 286 1 15 SHEET 1 A10 VAL A 77 LEU A 84 0 SHEET 2 A10 VAL A 201 ASN A 206 -1 O CYS A 205 N THR A 78 SHEET 3 A10 MSE A 59 ALA A 63 -1 N GLY A 60 O ILE A 204 SHEET 4 A10 ILE A 6 LEU A 9 1 N LEU A 9 O MSE A 59 SHEET 5 A10 MSE A 37 PRO A 42 1 O LEU A 40 N PHE A 8 SHEET 6 A10 MSE B 37 PRO B 42 -1 O GLU B 41 N GLU A 41 SHEET 7 A10 ILE B 6 LEU B 9 1 N PHE B 8 O LEU B 40 SHEET 8 A10 MSE B 59 ALA B 63 1 O MSE B 59 N LEU B 9 SHEET 9 A10 VAL B 201 ASN B 206 -1 O LEU B 202 N LYS B 62 SHEET 10 A10 VAL B 77 LEU B 84 -1 N LEU B 83 O VAL B 201 SHEET 1 B 5 THR A 137 ARG A 140 0 SHEET 2 B 5 LYS A 110 TYR A 113 1 N ILE A 111 O THR A 137 SHEET 3 B 5 ALA A 156 ILE A 160 1 O ALA A 156 N GLY A 112 SHEET 4 B 5 THR A 89 LEU A 94 -1 N LEU A 92 O GLY A 157 SHEET 5 B 5 ALA A 182 ARG A 186 -1 O LEU A 185 N VAL A 91 SHEET 1 C 3 ALA B 138 ARG B 140 0 SHEET 2 C 3 ILE B 111 TYR B 113 1 N ILE B 111 O VAL B 139 SHEET 3 C 3 ALA B 156 GLY B 157 1 O ALA B 156 N GLY B 112 LINK C ASP A 36 N MSE A 37 1555 1555 1.32 LINK C MSE A 37 N ALA A 38 1555 1555 1.33 LINK C ASP A 58 N MSE A 59 1555 1555 1.33 LINK C MSE A 59 N GLY A 60 1555 1555 1.33 LINK C ALA A 63 N MSE A 64 1555 1555 1.33 LINK C MSE A 64 N ILE A 65 1555 1555 1.33 LINK C GLY A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N ASN A 144 1555 1555 1.33 LINK C CYS A 162 N MSE A 163 1555 1555 1.33 LINK C MSE A 163 N GLN A 164 1555 1555 1.33 LINK C LYS A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N LEU A 185 1555 1555 1.32 LINK C LEU A 319 N MSE A 320 1555 1555 1.33 LINK C MSE A 320 N ALA A 321 1555 1555 1.33 LINK C ASP B 36 N MSE B 37 1555 1555 1.33 LINK C MSE B 37 N ALA B 38 1555 1555 1.33 LINK C ASP B 58 N MSE B 59 1555 1555 1.34 LINK C MSE B 59 N GLY B 60 1555 1555 1.32 LINK C ALA B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N ILE B 65 1555 1555 1.33 LINK C GLY B 142 N MSE B 143 1555 1555 1.32 LINK C MSE B 143 N ASN B 144 1555 1555 1.34 LINK C CYS B 162 N MSE B 163 1555 1555 1.33 LINK C MSE B 163 N GLN B 164 1555 1555 1.33 LINK C LYS B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N LEU B 185 1555 1555 1.33 CISPEP 1 SER A 97 GLY A 98 0 6.10 CISPEP 2 CYS A 196 CYS A 197 0 28.90 CRYST1 54.440 109.210 122.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018369 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009157 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008190 0.00000