HEADER OXIDOREDUCTASE 19-SEP-12 4H6R TITLE STRUCTURE OF REDUCED DEINOCOCCUS RADIODURANS PROLINE DEHYDROGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROLINE DEHYDROGENASE; COMPND 3 CHAIN: A, C; COMPND 4 EC: 1.5.99.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIODURANS; SOURCE 3 ORGANISM_TAXID: 243230; SOURCE 4 STRAIN: R1; SOURCE 5 GENE: DR_0814, PROLINE DEHYDROGENASE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PKA8H KEYWDS BETA8-ALPHA8-BARREL, FLAVOENZYME, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR L.MIN,J.J.TANNER REVDAT 3 20-SEP-23 4H6R 1 REMARK SEQADV REVDAT 2 02-JAN-13 4H6R 1 JRNL REVDAT 1 28-NOV-12 4H6R 0 JRNL AUTH M.LUO,B.W.ARENTSON,D.SRIVASTAVA,D.F.BECKER,J.J.TANNER JRNL TITL CRYSTAL STRUCTURES AND KINETICS OF MONOFUNCTIONAL PROLINE JRNL TITL 2 DEHYDROGENASE PROVIDE INSIGHT INTO SUBSTRATE RECOGNITION AND JRNL TITL 3 CONFORMATIONAL CHANGES ASSOCIATED WITH FLAVIN REDUCTION AND JRNL TITL 4 PRODUCT RELEASE. JRNL REF BIOCHEMISTRY V. 51 10099 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23151026 JRNL DOI 10.1021/BI301312F REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9590 - 5.4336 1.00 3504 154 0.1989 0.2169 REMARK 3 2 5.4336 - 4.3143 1.00 3488 176 0.1637 0.1830 REMARK 3 3 4.3143 - 3.7694 1.00 3503 182 0.1547 0.1863 REMARK 3 4 3.7694 - 3.4249 1.00 3472 200 0.1519 0.1532 REMARK 3 5 3.4249 - 3.1796 1.00 3459 211 0.1737 0.2218 REMARK 3 6 3.1796 - 2.9922 1.00 3538 161 0.1789 0.1941 REMARK 3 7 2.9922 - 2.8423 1.00 3445 199 0.1880 0.2387 REMARK 3 8 2.8423 - 2.7186 1.00 3443 205 0.1731 0.2118 REMARK 3 9 2.7186 - 2.6140 1.00 3484 235 0.1812 0.2135 REMARK 3 10 2.6140 - 2.5238 1.00 3463 190 0.1785 0.2172 REMARK 3 11 2.5238 - 2.4449 1.00 3502 178 0.1773 0.2065 REMARK 3 12 2.4449 - 2.3750 1.00 3500 175 0.1734 0.2051 REMARK 3 13 2.3750 - 2.3125 1.00 3501 178 0.1704 0.1955 REMARK 3 14 2.3125 - 2.2561 1.00 3493 181 0.1726 0.2180 REMARK 3 15 2.2561 - 2.2048 1.00 3484 179 0.1664 0.2029 REMARK 3 16 2.2048 - 2.1579 1.00 3458 181 0.1730 0.1935 REMARK 3 17 2.1579 - 2.1147 1.00 3557 160 0.1771 0.1809 REMARK 3 18 2.1147 - 2.0748 1.00 3474 172 0.1841 0.2575 REMARK 3 19 2.0748 - 2.0378 1.00 3486 195 0.1883 0.2474 REMARK 3 20 2.0378 - 2.0032 1.00 3479 194 0.1856 0.2281 REMARK 3 21 2.0032 - 1.9709 1.00 3427 177 0.1941 0.2329 REMARK 3 22 1.9709 - 1.9406 1.00 3542 170 0.2075 0.2500 REMARK 3 23 1.9406 - 1.9121 0.99 3485 172 0.2438 0.2455 REMARK 3 24 1.9121 - 1.8851 1.00 3431 189 0.2396 0.2563 REMARK 3 25 1.8851 - 1.8596 1.00 3554 202 0.2215 0.2535 REMARK 3 26 1.8596 - 1.8355 1.00 3420 171 0.2240 0.2640 REMARK 3 27 1.8355 - 1.8126 1.00 3443 219 0.2292 0.2707 REMARK 3 28 1.8126 - 1.7907 1.00 3490 206 0.2787 0.3412 REMARK 3 29 1.7907 - 1.7699 1.00 3486 210 0.2930 0.3662 REMARK 3 30 1.7699 - 1.7500 0.99 3463 195 0.3032 0.3145 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4350 REMARK 3 ANGLE : 1.453 5925 REMARK 3 CHIRALITY : 0.105 659 REMARK 3 PLANARITY : 0.007 768 REMARK 3 DIHEDRAL : 15.695 1583 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H6R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : BEAMLINE OPTICS REMARK 200 OPTICS : BEAMLINE OPTICS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58089 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 47.844 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.83700 REMARK 200 R SYM FOR SHELL (I) : 0.83700 REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2G37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM CHLORIDE, 25% (W/V) REMARK 280 PEG3350, AND 0.1 MM BIS-TRIS, PH 5.8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.98200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.84400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.98200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.84400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ASP A 3 REMARK 465 GLN A 4 REMARK 465 LEU A 5 REMARK 465 TYR A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 LEU A 11 REMARK 465 THR A 12 REMARK 465 VAL A 13 REMARK 465 ALA A 14 REMARK 465 GLU A 15 REMARK 465 ARG A 16 REMARK 465 PRO A 17 REMARK 465 GLN A 18 REMARK 465 VAL A 19 REMARK 465 GLU A 20 REMARK 465 GLN A 21 REMARK 465 LEU A 22 REMARK 465 ALA A 23 REMARK 465 ARG A 24 REMARK 465 GLN A 25 REMARK 465 ARG A 298 REMARK 465 ASN A 299 REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 PHE A 302 REMARK 465 VAL A 303 REMARK 465 VAL A 304 REMARK 465 GLN A 305 REMARK 465 GLY A 306 REMARK 465 MET A 307 REMARK 465 LEU A 308 REMARK 465 LYS A 309 REMARK 465 GLY A 310 REMARK 465 GLY C -1 REMARK 465 HIS C 0 REMARK 465 MET C 1 REMARK 465 ILE C 2 REMARK 465 ASP C 3 REMARK 465 GLN C 4 REMARK 465 LEU C 5 REMARK 465 TYR C 6 REMARK 465 ARG C 7 REMARK 465 LYS C 8 REMARK 465 ALA C 9 REMARK 465 VAL C 10 REMARK 465 LEU C 11 REMARK 465 THR C 12 REMARK 465 VAL C 13 REMARK 465 ALA C 14 REMARK 465 GLU C 15 REMARK 465 ARG C 16 REMARK 465 PRO C 17 REMARK 465 GLN C 18 REMARK 465 VAL C 19 REMARK 465 ARG C 298 REMARK 465 ASN C 299 REMARK 465 ALA C 300 REMARK 465 ALA C 301 REMARK 465 PHE C 302 REMARK 465 VAL C 303 REMARK 465 VAL C 304 REMARK 465 GLN C 305 REMARK 465 GLY C 306 REMARK 465 MET C 307 REMARK 465 LEU C 308 REMARK 465 LYS C 309 REMARK 465 GLY C 310 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 MET A 27 CE REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 PHE A 65 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 67 CG OD1 OD2 REMARK 470 LYS A 71 CD CE NZ REMARK 470 LYS A 81 CE NZ REMARK 470 LYS A 92 CE NZ REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LEU A 194 CD1 CD2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 GLN A 209 CD OE1 NE2 REMARK 470 ARG A 213 NE CZ NH1 NH2 REMARK 470 ARG A 233 CD NE CZ NH1 NH2 REMARK 470 ARG A 262 CZ NH1 NH2 REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ARG A 283 CD NE CZ NH1 NH2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU C 20 CG CD OE1 OE2 REMARK 470 GLN C 21 CG CD OE1 NE2 REMARK 470 ARG C 24 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 32 CG CD OE1 OE2 REMARK 470 GLU C 41 CG CD OE1 OE2 REMARK 470 GLN C 45 CG CD OE1 NE2 REMARK 470 ARG C 52 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 67 CG OD1 OD2 REMARK 470 LYS C 71 CD CE NZ REMARK 470 GLU C 74 CD OE1 OE2 REMARK 470 LYS C 81 CE NZ REMARK 470 LYS C 92 CG CD CE NZ REMARK 470 ASP C 107 CG OD1 OD2 REMARK 470 ASN C 109 CG OD1 ND2 REMARK 470 GLU C 147 CG CD OE1 OE2 REMARK 470 GLU C 159 CG CD OE1 OE2 REMARK 470 LEU C 173 CG CD1 CD2 REMARK 470 SER C 178 OG REMARK 470 LEU C 182 CG CD1 CD2 REMARK 470 ARG C 183 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 194 CG CD1 CD2 REMARK 470 THR C 198 OG1 CG2 REMARK 470 VAL C 199 CG1 CG2 REMARK 470 ASP C 203 CG OD1 OD2 REMARK 470 LYS C 204 CG CD CE NZ REMARK 470 ASP C 206 CG OD1 OD2 REMARK 470 GLN C 209 CG CD OE1 NE2 REMARK 470 ARG C 213 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 217 CG CD OE1 NE2 REMARK 470 LYS C 220 CG CD CE NZ REMARK 470 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 237 CG OD1 OD2 REMARK 470 ARG C 240 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 243 CG CD1 CD2 REMARK 470 ILE C 247 CG1 CG2 CD1 REMARK 470 LYS C 249 CG CD CE NZ REMARK 470 MET C 256 CE REMARK 470 ARG C 262 NE CZ NH1 NH2 REMARK 470 LYS C 266 CD CE NZ REMARK 470 ARG C 283 CD NE CZ NH1 NH2 REMARK 470 GLU C 295 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 137 -151.44 -93.49 REMARK 500 GLU C 137 -142.03 -96.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FDA C 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 2002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4H6Q RELATED DB: PDB DBREF 4H6R A 1 310 UNP Q9RW55 Q9RW55_DEIRA 1 310 DBREF 4H6R C 1 310 UNP Q9RW55 Q9RW55_DEIRA 1 310 SEQADV 4H6R GLY A -1 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6R HIS A 0 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6R GLY C -1 UNP Q9RW55 EXPRESSION TAG SEQADV 4H6R HIS C 0 UNP Q9RW55 EXPRESSION TAG SEQRES 1 A 312 GLY HIS MET ILE ASP GLN LEU TYR ARG LYS ALA VAL LEU SEQRES 2 A 312 THR VAL ALA GLU ARG PRO GLN VAL GLU GLN LEU ALA ARG SEQRES 3 A 312 GLN LYS MET TRP ASN LEU ALA GLU ARG PHE VAL ALA GLY SEQRES 4 A 312 GLU SER ILE GLU SER ALA ILE GLN ALA VAL GLN ALA LEU SEQRES 5 A 312 GLU ARG ASP GLY ILE ALA GLY ASN LEU ASP LEU LEU GLY SEQRES 6 A 312 GLU PHE ILE ASP SER PRO ALA LYS CYS THR GLU PHE ALA SEQRES 7 A 312 ASP ASP VAL ILE LYS LEU ILE GLU ALA ALA HIS ALA ALA SEQRES 8 A 312 GLY ILE LYS PRO TYR VAL SER ILE LYS LEU SER SER VAL SEQRES 9 A 312 GLY GLN GLY LYS ASP GLU ASN GLY GLU ASP LEU GLY LEU SEQRES 10 A 312 THR ASN ALA ARG ARG ILE ILE ALA LYS ALA LYS GLU TYR SEQRES 11 A 312 GLY GLY PHE ILE CYS LEU ASP MET GLU ASP HIS THR ARG SEQRES 12 A 312 VAL ASP VAL THR LEU GLU GLN PHE ARG THR LEU VAL GLY SEQRES 13 A 312 GLU PHE GLY ALA GLU HIS VAL GLY THR VAL LEU GLN SER SEQRES 14 A 312 TYR LEU TYR ARG SER LEU GLY ASP ARG ALA SER LEU ASP SEQRES 15 A 312 ASP LEU ARG PRO ASN ILE ARG MET VAL LYS GLY ALA TYR SEQRES 16 A 312 LEU GLU PRO ALA THR VAL ALA TYR PRO ASP LYS ALA ASP SEQRES 17 A 312 VAL ASP GLN ASN TYR ARG ARG LEU VAL PHE GLN HIS LEU SEQRES 18 A 312 LYS ALA GLY ASN TYR THR ASN VAL ALA THR HIS ASP GLU SEQRES 19 A 312 ARG ILE ILE ASP ASP VAL LYS ARG PHE VAL LEU ALA HIS SEQRES 20 A 312 GLY ILE GLY LYS ASP ALA PHE GLU PHE GLN MET LEU TYR SEQRES 21 A 312 GLY ILE ARG ARG ASP LEU GLN LYS GLN LEU ALA ALA GLU SEQRES 22 A 312 GLY TYR ARG VAL ARG VAL TYR LEU PRO TYR GLY ARG ASP SEQRES 23 A 312 TRP TYR ALA TYR PHE SER ARG ARG ILE ALA GLU THR PRO SEQRES 24 A 312 ARG ASN ALA ALA PHE VAL VAL GLN GLY MET LEU LYS GLY SEQRES 1 C 312 GLY HIS MET ILE ASP GLN LEU TYR ARG LYS ALA VAL LEU SEQRES 2 C 312 THR VAL ALA GLU ARG PRO GLN VAL GLU GLN LEU ALA ARG SEQRES 3 C 312 GLN LYS MET TRP ASN LEU ALA GLU ARG PHE VAL ALA GLY SEQRES 4 C 312 GLU SER ILE GLU SER ALA ILE GLN ALA VAL GLN ALA LEU SEQRES 5 C 312 GLU ARG ASP GLY ILE ALA GLY ASN LEU ASP LEU LEU GLY SEQRES 6 C 312 GLU PHE ILE ASP SER PRO ALA LYS CYS THR GLU PHE ALA SEQRES 7 C 312 ASP ASP VAL ILE LYS LEU ILE GLU ALA ALA HIS ALA ALA SEQRES 8 C 312 GLY ILE LYS PRO TYR VAL SER ILE LYS LEU SER SER VAL SEQRES 9 C 312 GLY GLN GLY LYS ASP GLU ASN GLY GLU ASP LEU GLY LEU SEQRES 10 C 312 THR ASN ALA ARG ARG ILE ILE ALA LYS ALA LYS GLU TYR SEQRES 11 C 312 GLY GLY PHE ILE CYS LEU ASP MET GLU ASP HIS THR ARG SEQRES 12 C 312 VAL ASP VAL THR LEU GLU GLN PHE ARG THR LEU VAL GLY SEQRES 13 C 312 GLU PHE GLY ALA GLU HIS VAL GLY THR VAL LEU GLN SER SEQRES 14 C 312 TYR LEU TYR ARG SER LEU GLY ASP ARG ALA SER LEU ASP SEQRES 15 C 312 ASP LEU ARG PRO ASN ILE ARG MET VAL LYS GLY ALA TYR SEQRES 16 C 312 LEU GLU PRO ALA THR VAL ALA TYR PRO ASP LYS ALA ASP SEQRES 17 C 312 VAL ASP GLN ASN TYR ARG ARG LEU VAL PHE GLN HIS LEU SEQRES 18 C 312 LYS ALA GLY ASN TYR THR ASN VAL ALA THR HIS ASP GLU SEQRES 19 C 312 ARG ILE ILE ASP ASP VAL LYS ARG PHE VAL LEU ALA HIS SEQRES 20 C 312 GLY ILE GLY LYS ASP ALA PHE GLU PHE GLN MET LEU TYR SEQRES 21 C 312 GLY ILE ARG ARG ASP LEU GLN LYS GLN LEU ALA ALA GLU SEQRES 22 C 312 GLY TYR ARG VAL ARG VAL TYR LEU PRO TYR GLY ARG ASP SEQRES 23 C 312 TRP TYR ALA TYR PHE SER ARG ARG ILE ALA GLU THR PRO SEQRES 24 C 312 ARG ASN ALA ALA PHE VAL VAL GLN GLY MET LEU LYS GLY HET FDA A2001 53 HET FDA C2001 53 HET ACT C2002 4 HETNAM FDA DIHYDROFLAVINE-ADENINE DINUCLEOTIDE HETNAM ACT ACETATE ION FORMUL 3 FDA 2(C27 H35 N9 O15 P2) FORMUL 5 ACT C2 H3 O2 1- FORMUL 6 HOH *297(H2 O) HELIX 1 1 MET A 27 GLU A 32 1 6 HELIX 2 2 SER A 39 ASP A 53 1 15 HELIX 3 3 SER A 68 ALA A 89 1 22 HELIX 4 4 LYS A 98 GLY A 103 5 6 HELIX 5 5 LEU A 113 TYR A 128 1 16 HELIX 6 6 ASP A 138 THR A 140 5 3 HELIX 7 7 ARG A 141 GLY A 157 1 17 HELIX 8 8 ARG A 171 LEU A 179 1 9 HELIX 9 9 ASP A 180 ARG A 183 5 4 HELIX 10 10 ASP A 203 ALA A 221 1 19 HELIX 11 11 ASP A 231 GLY A 246 1 16 HELIX 12 12 ARG A 261 GLU A 271 1 11 HELIX 13 13 TRP A 285 GLU A 295 1 11 HELIX 14 14 GLN C 21 GLU C 32 1 12 HELIX 15 15 SER C 39 ARG C 52 1 14 HELIX 16 16 SER C 68 GLY C 90 1 23 HELIX 17 17 LYS C 98 VAL C 102 5 5 HELIX 18 18 LEU C 113 TYR C 128 1 16 HELIX 19 19 ASP C 138 THR C 140 5 3 HELIX 20 20 ARG C 141 GLY C 157 1 17 HELIX 21 21 ARG C 171 LEU C 179 1 9 HELIX 22 22 ASP C 180 ARG C 183 5 4 HELIX 23 23 ASP C 203 ALA C 221 1 19 HELIX 24 24 ASP C 231 GLY C 246 1 16 HELIX 25 25 GLY C 248 ASP C 250 5 3 HELIX 26 26 ARG C 261 GLU C 271 1 11 HELIX 27 27 TRP C 285 GLU C 295 1 11 SHEET 1 A 9 ALA A 56 LEU A 61 0 SHEET 2 A 9 TYR A 94 ILE A 97 1 O SER A 96 N LEU A 59 SHEET 3 A 9 PHE A 131 LEU A 134 1 O CYS A 133 N VAL A 95 SHEET 4 A 9 VAL A 161 GLN A 166 1 O GLY A 162 N LEU A 134 SHEET 5 A 9 ILE A 186 VAL A 189 1 O ARG A 187 N THR A 163 SHEET 6 A 9 THR A 225 ALA A 228 1 O ASN A 226 N MET A 188 SHEET 7 A 9 PHE A 252 LEU A 257 1 O GLU A 253 N VAL A 227 SHEET 8 A 9 VAL A 275 TYR A 281 1 O TYR A 278 N MET A 256 SHEET 9 A 9 ALA A 56 LEU A 61 1 N ASN A 58 O LEU A 279 SHEET 1 B 2 ASP A 107 GLU A 108 0 SHEET 2 B 2 GLU A 111 ASP A 112 -1 O GLU A 111 N GLU A 108 SHEET 1 C 9 ALA C 56 LEU C 61 0 SHEET 2 C 9 TYR C 94 ILE C 97 1 O SER C 96 N LEU C 59 SHEET 3 C 9 PHE C 131 LEU C 134 1 O CYS C 133 N VAL C 95 SHEET 4 C 9 VAL C 161 GLN C 166 1 O GLY C 162 N LEU C 134 SHEET 5 C 9 ILE C 186 VAL C 189 1 O ARG C 187 N THR C 163 SHEET 6 C 9 THR C 225 ALA C 228 1 O ASN C 226 N MET C 188 SHEET 7 C 9 PHE C 252 LEU C 257 1 O GLU C 253 N VAL C 227 SHEET 8 C 9 VAL C 275 TYR C 281 1 O TYR C 278 N MET C 256 SHEET 9 C 9 ALA C 56 LEU C 61 1 N ALA C 56 O VAL C 277 SHEET 1 D 2 ASP C 107 GLU C 108 0 SHEET 2 D 2 GLU C 111 ASP C 112 -1 O GLU C 111 N GLU C 108 SITE 1 AC1 24 ASP A 135 MET A 136 VAL A 164 GLN A 166 SITE 2 AC1 24 ARG A 187 VAL A 189 LYS A 190 GLY A 191 SITE 3 AC1 24 ALA A 192 TYR A 193 THR A 229 HIS A 230 SITE 4 AC1 24 LEU A 257 ILE A 260 TYR A 278 ARG A 292 SITE 5 AC1 24 GLU A 295 PRO A 297 HOH A2101 HOH A2131 SITE 6 AC1 24 HOH A2158 HOH A2182 HOH A2242 HOH A2297 SITE 1 AC2 25 ARG C 33 ASP C 135 MET C 136 VAL C 164 SITE 2 AC2 25 GLN C 166 ARG C 187 VAL C 189 LYS C 190 SITE 3 AC2 25 GLY C 191 ALA C 192 TYR C 193 ALA C 228 SITE 4 AC2 25 THR C 229 HIS C 230 GLN C 255 MET C 256 SITE 5 AC2 25 LEU C 257 ILE C 260 TYR C 278 ARG C 292 SITE 6 AC2 25 GLU C 295 PRO C 297 ACT C2002 HOH C2115 SITE 7 AC2 25 HOH C2120 SITE 1 AC3 5 LYS C 98 TYR C 288 ARG C 291 ARG C 292 SITE 2 AC3 5 FDA C2001 CRYST1 43.352 95.688 135.964 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010451 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007355 0.00000