data_4H79 # _entry.id 4H79 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4H79 pdb_00004h79 10.2210/pdb4h79/pdb RCSB RCSB075107 ? ? WWPDB D_1000075107 ? ? # _pdbx_database_status.entry_id 4H79 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-09-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ke, A.' 1 'Nam, K.H.' 2 # _citation.id primary _citation.title 'Nucleic acid binding surface and dimer interface revealed by CRISPR-associated CasB protein structures.' _citation.journal_abbrev 'Febs Lett.' _citation.journal_volume 586 _citation.page_first 3956 _citation.page_last 3961 _citation.year 2012 _citation.journal_id_ASTM FEBLAL _citation.country NE _citation.journal_id_ISSN 0014-5793 _citation.journal_id_CSD 0165 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23079036 _citation.pdbx_database_id_DOI 10.1016/j.febslet.2012.09.041 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Nam, K.H.' 1 ? primary 'Huang, Q.' 2 ? primary 'Ke, A.' 3 ? # _cell.length_a 86.749 _cell.length_b 86.749 _cell.length_c 70.016 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4H79 _cell.pdbx_unique_axis ? _cell.Z_PDB 6 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 61' _symmetry.entry_id 4H79 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 169 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CRISPR-associated protein, Cse2 family' 24682.883 1 ? ? ? ? 2 non-polymer syn 1,2-ETHANEDIOL 62.068 2 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMTTTETPKTISLTWVGTFVDQRVREIQEGYRLDNPRAVATLARLRRGAGKEIGDTPDLWGLILDDRFYADAPPLKEKD MEVAENSAHIALTLYAIHQQSRRDDRMHQRGWGLGEAVRRLMPSSEIDEPLRKRFVQVGHAVTYKALAQRLREIVTLLRR DAIPLDYGLLADQLYQFRTPQGAQRVRTAWGRGFHAYRPKTTQNPDSTTTTEKDNS ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMTTTETPKTISLTWVGTFVDQRVREIQEGYRLDNPRAVATLARLRRGAGKEIGDTPDLWGLILDDRFYADAPPLKEKD MEVAENSAHIALTLYAIHQQSRRDDRMHQRGWGLGEAVRRLMPSSEIDEPLRKRFVQVGHAVTYKALAQRLREIVTLLRR DAIPLDYGLLADQLYQFRTPQGAQRVRTAWGRGFHAYRPKTTQNPDSTTTTEKDNS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 THR n 1 5 THR n 1 6 THR n 1 7 GLU n 1 8 THR n 1 9 PRO n 1 10 LYS n 1 11 THR n 1 12 ILE n 1 13 SER n 1 14 LEU n 1 15 THR n 1 16 TRP n 1 17 VAL n 1 18 GLY n 1 19 THR n 1 20 PHE n 1 21 VAL n 1 22 ASP n 1 23 GLN n 1 24 ARG n 1 25 VAL n 1 26 ARG n 1 27 GLU n 1 28 ILE n 1 29 GLN n 1 30 GLU n 1 31 GLY n 1 32 TYR n 1 33 ARG n 1 34 LEU n 1 35 ASP n 1 36 ASN n 1 37 PRO n 1 38 ARG n 1 39 ALA n 1 40 VAL n 1 41 ALA n 1 42 THR n 1 43 LEU n 1 44 ALA n 1 45 ARG n 1 46 LEU n 1 47 ARG n 1 48 ARG n 1 49 GLY n 1 50 ALA n 1 51 GLY n 1 52 LYS n 1 53 GLU n 1 54 ILE n 1 55 GLY n 1 56 ASP n 1 57 THR n 1 58 PRO n 1 59 ASP n 1 60 LEU n 1 61 TRP n 1 62 GLY n 1 63 LEU n 1 64 ILE n 1 65 LEU n 1 66 ASP n 1 67 ASP n 1 68 ARG n 1 69 PHE n 1 70 TYR n 1 71 ALA n 1 72 ASP n 1 73 ALA n 1 74 PRO n 1 75 PRO n 1 76 LEU n 1 77 LYS n 1 78 GLU n 1 79 LYS n 1 80 ASP n 1 81 MET n 1 82 GLU n 1 83 VAL n 1 84 ALA n 1 85 GLU n 1 86 ASN n 1 87 SER n 1 88 ALA n 1 89 HIS n 1 90 ILE n 1 91 ALA n 1 92 LEU n 1 93 THR n 1 94 LEU n 1 95 TYR n 1 96 ALA n 1 97 ILE n 1 98 HIS n 1 99 GLN n 1 100 GLN n 1 101 SER n 1 102 ARG n 1 103 ARG n 1 104 ASP n 1 105 ASP n 1 106 ARG n 1 107 MET n 1 108 HIS n 1 109 GLN n 1 110 ARG n 1 111 GLY n 1 112 TRP n 1 113 GLY n 1 114 LEU n 1 115 GLY n 1 116 GLU n 1 117 ALA n 1 118 VAL n 1 119 ARG n 1 120 ARG n 1 121 LEU n 1 122 MET n 1 123 PRO n 1 124 SER n 1 125 SER n 1 126 GLU n 1 127 ILE n 1 128 ASP n 1 129 GLU n 1 130 PRO n 1 131 LEU n 1 132 ARG n 1 133 LYS n 1 134 ARG n 1 135 PHE n 1 136 VAL n 1 137 GLN n 1 138 VAL n 1 139 GLY n 1 140 HIS n 1 141 ALA n 1 142 VAL n 1 143 THR n 1 144 TYR n 1 145 LYS n 1 146 ALA n 1 147 LEU n 1 148 ALA n 1 149 GLN n 1 150 ARG n 1 151 LEU n 1 152 ARG n 1 153 GLU n 1 154 ILE n 1 155 VAL n 1 156 THR n 1 157 LEU n 1 158 LEU n 1 159 ARG n 1 160 ARG n 1 161 ASP n 1 162 ALA n 1 163 ILE n 1 164 PRO n 1 165 LEU n 1 166 ASP n 1 167 TYR n 1 168 GLY n 1 169 LEU n 1 170 LEU n 1 171 ALA n 1 172 ASP n 1 173 GLN n 1 174 LEU n 1 175 TYR n 1 176 GLN n 1 177 PHE n 1 178 ARG n 1 179 THR n 1 180 PRO n 1 181 GLN n 1 182 GLY n 1 183 ALA n 1 184 GLN n 1 185 ARG n 1 186 VAL n 1 187 ARG n 1 188 THR n 1 189 ALA n 1 190 TRP n 1 191 GLY n 1 192 ARG n 1 193 GLY n 1 194 PHE n 1 195 HIS n 1 196 ALA n 1 197 TYR n 1 198 ARG n 1 199 PRO n 1 200 LYS n 1 201 THR n 1 202 THR n 1 203 GLN n 1 204 ASN n 1 205 PRO n 1 206 ASP n 1 207 SER n 1 208 THR n 1 209 THR n 1 210 THR n 1 211 THR n 1 212 GLU n 1 213 LYS n 1 214 ASP n 1 215 ASN n 1 216 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Tfu_1599 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YX _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermobifida fusca' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 269800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3) star' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'modified pSUMO' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q47PI5_THEFY _struct_ref.pdbx_db_accession Q47PI5 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTTTETPKTISLTWVGTFVDQRVREIQEGYRLDNPRAVATLARLRRGAGKEIGDTPDLWGLILDDRFYADAPPLKEKDME VAENSAHIALTLYAIHQQSRRDDRMHQRGWGLGEAVRRLMPSSEIDEPLRKRFVQVGHAVTYKALAQRLREIVTLLRRDA IPLDYGLLADQLYQFRTPQGAQRVRTAWGRGFHAYRPKTTQNPDSTTTTEKDNS ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4H79 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 216 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q47PI5 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 214 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 214 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4H79 GLY A 1 ? UNP Q47PI5 ? ? 'expression tag' -1 1 1 4H79 SER A 2 ? UNP Q47PI5 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4H79 _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.08 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 60.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 291.5 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.1M Tris-HCl, pH 8.0-8.5, 2% (v/v) ethanol, VAPOR DIFFUSION, HANGING DROP, temperature 291.5K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2010-11-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9770 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'CHESS BEAMLINE A1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9770 _diffrn_source.pdbx_synchrotron_site CHESS _diffrn_source.pdbx_synchrotron_beamline A1 # _reflns.entry_id 4H79 _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 20 _reflns.number_all ? _reflns.number_obs 22861 _reflns.percent_possible_obs 96.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 78.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4H79 _refine.ls_d_res_high 1.9000 _refine.ls_d_res_low 20.0000 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 96.3300 _refine.ls_number_reflns_obs 22848 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES : RESIDUAL ONLY' _refine.ls_R_factor_all 0.15 _refine.ls_R_factor_obs 0.1500 _refine.ls_R_factor_R_work 0.1476 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1962 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1171 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 37.0509 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.0300 _refine.aniso_B[2][2] 2.0300 _refine.aniso_B[3][3] -3.0400 _refine.aniso_B[1][2] 1.0100 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9730 _refine.correlation_coeff_Fo_to_Fc_free 0.9550 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1280 _refine.pdbx_overall_ESU_R_Free 0.1020 _refine.overall_SU_ML 0.0710 _refine.overall_SU_B 5.5070 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 2ZCA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 121.480 _refine.B_iso_min 14.820 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 1.000 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1441 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 8 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 1538 _refine_hist.d_res_high 1.9000 _refine_hist.d_res_low 20.0000 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1476 0.022 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1988 1.635 1.952 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 175 5.253 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 78 32.083 21.282 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 255 17.670 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 24 15.989 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 211 0.119 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1137 0.009 0.021 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1476 10.776 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 25 28.111 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 1517 29.765 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9000 _refine_ls_shell.d_res_low 1.9490 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 80.2600 _refine_ls_shell.number_reflns_R_work 1331 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.1980 _refine_ls_shell.R_factor_R_free 0.2950 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 68 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1399 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4H79 _struct.title 'Crystal structure of CasB from Thermobifida fusca' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4H79 _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN' _struct_keywords.text 'CRISPR, Cascade, CasB, CRISPR-assoicated protein, Nucleic acid binding protein, DNA BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 15 ? LEU A 34 ? THR A 13 LEU A 32 1 ? 20 HELX_P HELX_P2 2 ASN A 36 ? ALA A 50 ? ASN A 34 ALA A 48 1 ? 15 HELX_P HELX_P3 3 TRP A 61 ? LEU A 65 ? TRP A 59 LEU A 63 1 ? 5 HELX_P HELX_P4 4 ASP A 66 ? ASP A 72 ? ASP A 64 ASP A 70 1 ? 7 HELX_P HELX_P5 5 LYS A 79 ? GLN A 100 ? LYS A 77 GLN A 98 1 ? 22 HELX_P HELX_P6 6 GLY A 113 ? ARG A 120 ? GLY A 111 ARG A 118 1 ? 8 HELX_P HELX_P7 7 ASP A 128 ? GLY A 139 ? ASP A 126 GLY A 137 1 ? 12 HELX_P HELX_P8 8 THR A 143 ? ASP A 161 ? THR A 141 ASP A 159 1 ? 19 HELX_P HELX_P9 9 ASP A 166 ? PHE A 177 ? ASP A 164 PHE A 175 1 ? 12 HELX_P HELX_P10 10 THR A 179 ? ALA A 196 ? THR A 177 ALA A 194 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A EDO 301 ? 3 'BINDING SITE FOR RESIDUE EDO A 301' AC2 Software A EDO 302 ? 5 'BINDING SITE FOR RESIDUE EDO A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLY A 111 ? GLY A 109 . ? 1_555 ? 2 AC1 3 TRP A 112 ? TRP A 110 . ? 1_555 ? 3 AC1 3 GLU A 116 ? GLU A 114 . ? 1_555 ? 4 AC2 5 ARG A 26 ? ARG A 24 . ? 1_555 ? 5 AC2 5 GLN A 29 ? GLN A 27 . ? 1_555 ? 6 AC2 5 HIS A 108 ? HIS A 106 . ? 1_555 ? 7 AC2 5 GLN A 109 ? GLN A 107 . ? 1_555 ? 8 AC2 5 ARG A 110 ? ARG A 108 . ? 1_555 ? # _atom_sites.entry_id 4H79 _atom_sites.fract_transf_matrix[1][1] 0.011528 _atom_sites.fract_transf_matrix[1][2] 0.006655 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013311 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014282 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 ? ? ? A . n A 1 2 SER 2 0 ? ? ? A . n A 1 3 MET 3 1 ? ? ? A . n A 1 4 THR 4 2 ? ? ? A . n A 1 5 THR 5 3 ? ? ? A . n A 1 6 THR 6 4 ? ? ? A . n A 1 7 GLU 7 5 ? ? ? A . n A 1 8 THR 8 6 ? ? ? A . n A 1 9 PRO 9 7 ? ? ? A . n A 1 10 LYS 10 8 ? ? ? A . n A 1 11 THR 11 9 ? ? ? A . n A 1 12 ILE 12 10 ? ? ? A . n A 1 13 SER 13 11 11 SER SER A . n A 1 14 LEU 14 12 12 LEU LEU A . n A 1 15 THR 15 13 13 THR THR A . n A 1 16 TRP 16 14 14 TRP TRP A . n A 1 17 VAL 17 15 15 VAL VAL A . n A 1 18 GLY 18 16 16 GLY GLY A . n A 1 19 THR 19 17 17 THR THR A . n A 1 20 PHE 20 18 18 PHE PHE A . n A 1 21 VAL 21 19 19 VAL VAL A . n A 1 22 ASP 22 20 20 ASP ASP A . n A 1 23 GLN 23 21 21 GLN GLN A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 VAL 25 23 23 VAL VAL A . n A 1 26 ARG 26 24 24 ARG ARG A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 ILE 28 26 26 ILE ILE A . n A 1 29 GLN 29 27 27 GLN GLN A . n A 1 30 GLU 30 28 28 GLU GLU A . n A 1 31 GLY 31 29 29 GLY GLY A . n A 1 32 TYR 32 30 30 TYR TYR A . n A 1 33 ARG 33 31 31 ARG ARG A . n A 1 34 LEU 34 32 32 LEU LEU A . n A 1 35 ASP 35 33 33 ASP ASP A . n A 1 36 ASN 36 34 34 ASN ASN A . n A 1 37 PRO 37 35 35 PRO PRO A . n A 1 38 ARG 38 36 36 ARG ARG A . n A 1 39 ALA 39 37 37 ALA ALA A . n A 1 40 VAL 40 38 38 VAL VAL A . n A 1 41 ALA 41 39 39 ALA ALA A . n A 1 42 THR 42 40 40 THR THR A . n A 1 43 LEU 43 41 41 LEU LEU A . n A 1 44 ALA 44 42 42 ALA ALA A . n A 1 45 ARG 45 43 43 ARG ARG A . n A 1 46 LEU 46 44 44 LEU LEU A . n A 1 47 ARG 47 45 45 ARG ARG A . n A 1 48 ARG 48 46 46 ARG ARG A . n A 1 49 GLY 49 47 47 GLY GLY A . n A 1 50 ALA 50 48 48 ALA ALA A . n A 1 51 GLY 51 49 49 GLY GLY A . n A 1 52 LYS 52 50 50 LYS LYS A . n A 1 53 GLU 53 51 ? ? ? A . n A 1 54 ILE 54 52 ? ? ? A . n A 1 55 GLY 55 53 ? ? ? A . n A 1 56 ASP 56 54 ? ? ? A . n A 1 57 THR 57 55 ? ? ? A . n A 1 58 PRO 58 56 ? ? ? A . n A 1 59 ASP 59 57 ? ? ? A . n A 1 60 LEU 60 58 58 LEU LEU A . n A 1 61 TRP 61 59 59 TRP TRP A . n A 1 62 GLY 62 60 60 GLY GLY A . n A 1 63 LEU 63 61 61 LEU LEU A . n A 1 64 ILE 64 62 62 ILE ILE A . n A 1 65 LEU 65 63 63 LEU LEU A . n A 1 66 ASP 66 64 64 ASP ASP A . n A 1 67 ASP 67 65 65 ASP ASP A . n A 1 68 ARG 68 66 66 ARG ARG A . n A 1 69 PHE 69 67 67 PHE PHE A . n A 1 70 TYR 70 68 68 TYR TYR A . n A 1 71 ALA 71 69 69 ALA ALA A . n A 1 72 ASP 72 70 70 ASP ASP A . n A 1 73 ALA 73 71 71 ALA ALA A . n A 1 74 PRO 74 72 72 PRO PRO A . n A 1 75 PRO 75 73 73 PRO PRO A . n A 1 76 LEU 76 74 74 LEU LEU A . n A 1 77 LYS 77 75 75 LYS LYS A . n A 1 78 GLU 78 76 76 GLU GLU A . n A 1 79 LYS 79 77 77 LYS LYS A . n A 1 80 ASP 80 78 78 ASP ASP A . n A 1 81 MET 81 79 79 MET MET A . n A 1 82 GLU 82 80 80 GLU GLU A . n A 1 83 VAL 83 81 81 VAL VAL A . n A 1 84 ALA 84 82 82 ALA ALA A . n A 1 85 GLU 85 83 83 GLU GLU A . n A 1 86 ASN 86 84 84 ASN ASN A . n A 1 87 SER 87 85 85 SER SER A . n A 1 88 ALA 88 86 86 ALA ALA A . n A 1 89 HIS 89 87 87 HIS HIS A . n A 1 90 ILE 90 88 88 ILE ILE A . n A 1 91 ALA 91 89 89 ALA ALA A . n A 1 92 LEU 92 90 90 LEU LEU A . n A 1 93 THR 93 91 91 THR THR A . n A 1 94 LEU 94 92 92 LEU LEU A . n A 1 95 TYR 95 93 93 TYR TYR A . n A 1 96 ALA 96 94 94 ALA ALA A . n A 1 97 ILE 97 95 95 ILE ILE A . n A 1 98 HIS 98 96 96 HIS HIS A . n A 1 99 GLN 99 97 97 GLN GLN A . n A 1 100 GLN 100 98 98 GLN GLN A . n A 1 101 SER 101 99 99 SER SER A . n A 1 102 ARG 102 100 100 ARG ARG A . n A 1 103 ARG 103 101 101 ARG ARG A . n A 1 104 ASP 104 102 102 ASP ASP A . n A 1 105 ASP 105 103 103 ASP ASP A . n A 1 106 ARG 106 104 104 ARG ARG A . n A 1 107 MET 107 105 105 MET MET A . n A 1 108 HIS 108 106 106 HIS HIS A . n A 1 109 GLN 109 107 107 GLN GLN A . n A 1 110 ARG 110 108 108 ARG ARG A . n A 1 111 GLY 111 109 109 GLY GLY A . n A 1 112 TRP 112 110 110 TRP TRP A . n A 1 113 GLY 113 111 111 GLY GLY A . n A 1 114 LEU 114 112 112 LEU LEU A . n A 1 115 GLY 115 113 113 GLY GLY A . n A 1 116 GLU 116 114 114 GLU GLU A . n A 1 117 ALA 117 115 115 ALA ALA A . n A 1 118 VAL 118 116 116 VAL VAL A . n A 1 119 ARG 119 117 117 ARG ARG A . n A 1 120 ARG 120 118 118 ARG ARG A . n A 1 121 LEU 121 119 119 LEU LEU A . n A 1 122 MET 122 120 120 MET MET A . n A 1 123 PRO 123 121 121 PRO PRO A . n A 1 124 SER 124 122 122 SER SER A . n A 1 125 SER 125 123 123 SER SER A . n A 1 126 GLU 126 124 124 GLU GLU A . n A 1 127 ILE 127 125 125 ILE ILE A . n A 1 128 ASP 128 126 126 ASP ASP A . n A 1 129 GLU 129 127 127 GLU GLU A . n A 1 130 PRO 130 128 128 PRO PRO A . n A 1 131 LEU 131 129 129 LEU LEU A . n A 1 132 ARG 132 130 130 ARG ARG A . n A 1 133 LYS 133 131 131 LYS LYS A . n A 1 134 ARG 134 132 132 ARG ARG A . n A 1 135 PHE 135 133 133 PHE PHE A . n A 1 136 VAL 136 134 134 VAL VAL A . n A 1 137 GLN 137 135 135 GLN GLN A . n A 1 138 VAL 138 136 136 VAL VAL A . n A 1 139 GLY 139 137 137 GLY GLY A . n A 1 140 HIS 140 138 138 HIS HIS A . n A 1 141 ALA 141 139 139 ALA ALA A . n A 1 142 VAL 142 140 140 VAL VAL A . n A 1 143 THR 143 141 141 THR THR A . n A 1 144 TYR 144 142 142 TYR TYR A . n A 1 145 LYS 145 143 143 LYS LYS A . n A 1 146 ALA 146 144 144 ALA ALA A . n A 1 147 LEU 147 145 145 LEU LEU A . n A 1 148 ALA 148 146 146 ALA ALA A . n A 1 149 GLN 149 147 147 GLN GLN A . n A 1 150 ARG 150 148 148 ARG ARG A . n A 1 151 LEU 151 149 149 LEU LEU A . n A 1 152 ARG 152 150 150 ARG ARG A . n A 1 153 GLU 153 151 151 GLU GLU A . n A 1 154 ILE 154 152 152 ILE ILE A . n A 1 155 VAL 155 153 153 VAL VAL A . n A 1 156 THR 156 154 154 THR THR A . n A 1 157 LEU 157 155 155 LEU LEU A . n A 1 158 LEU 158 156 156 LEU LEU A . n A 1 159 ARG 159 157 157 ARG ARG A . n A 1 160 ARG 160 158 158 ARG ARG A . n A 1 161 ASP 161 159 159 ASP ASP A . n A 1 162 ALA 162 160 160 ALA ALA A . n A 1 163 ILE 163 161 161 ILE ILE A . n A 1 164 PRO 164 162 162 PRO PRO A . n A 1 165 LEU 165 163 163 LEU LEU A . n A 1 166 ASP 166 164 164 ASP ASP A . n A 1 167 TYR 167 165 165 TYR TYR A . n A 1 168 GLY 168 166 166 GLY GLY A . n A 1 169 LEU 169 167 167 LEU LEU A . n A 1 170 LEU 170 168 168 LEU LEU A . n A 1 171 ALA 171 169 169 ALA ALA A . n A 1 172 ASP 172 170 170 ASP ASP A . n A 1 173 GLN 173 171 171 GLN GLN A . n A 1 174 LEU 174 172 172 LEU LEU A . n A 1 175 TYR 175 173 173 TYR TYR A . n A 1 176 GLN 176 174 174 GLN GLN A . n A 1 177 PHE 177 175 175 PHE PHE A . n A 1 178 ARG 178 176 176 ARG ARG A . n A 1 179 THR 179 177 177 THR THR A . n A 1 180 PRO 180 178 178 PRO PRO A . n A 1 181 GLN 181 179 179 GLN GLN A . n A 1 182 GLY 182 180 180 GLY GLY A . n A 1 183 ALA 183 181 181 ALA ALA A . n A 1 184 GLN 184 182 182 GLN GLN A . n A 1 185 ARG 185 183 183 ARG ARG A . n A 1 186 VAL 186 184 184 VAL VAL A . n A 1 187 ARG 187 185 185 ARG ARG A . n A 1 188 THR 188 186 186 THR THR A . n A 1 189 ALA 189 187 187 ALA ALA A . n A 1 190 TRP 190 188 188 TRP TRP A . n A 1 191 GLY 191 189 189 GLY GLY A . n A 1 192 ARG 192 190 190 ARG ARG A . n A 1 193 GLY 193 191 191 GLY GLY A . n A 1 194 PHE 194 192 192 PHE PHE A . n A 1 195 HIS 195 193 193 HIS HIS A . n A 1 196 ALA 196 194 194 ALA ALA A . n A 1 197 TYR 197 195 ? ? ? A . n A 1 198 ARG 198 196 ? ? ? A . n A 1 199 PRO 199 197 ? ? ? A . n A 1 200 LYS 200 198 ? ? ? A . n A 1 201 THR 201 199 ? ? ? A . n A 1 202 THR 202 200 ? ? ? A . n A 1 203 GLN 203 201 ? ? ? A . n A 1 204 ASN 204 202 ? ? ? A . n A 1 205 PRO 205 203 ? ? ? A . n A 1 206 ASP 206 204 ? ? ? A . n A 1 207 SER 207 205 ? ? ? A . n A 1 208 THR 208 206 ? ? ? A . n A 1 209 THR 209 207 ? ? ? A . n A 1 210 THR 210 208 ? ? ? A . n A 1 211 THR 211 209 ? ? ? A . n A 1 212 GLU 212 210 ? ? ? A . n A 1 213 LYS 213 211 ? ? ? A . n A 1 214 ASP 214 212 ? ? ? A . n A 1 215 ASN 215 213 ? ? ? A . n A 1 216 SER 216 214 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO 1 301 1 EDO EDO A . C 2 EDO 1 302 1 EDO EDO A . D 3 HOH 1 401 1 HOH HOH A . D 3 HOH 2 402 2 HOH HOH A . D 3 HOH 3 403 3 HOH HOH A . D 3 HOH 4 404 4 HOH HOH A . D 3 HOH 5 405 5 HOH HOH A . D 3 HOH 6 406 6 HOH HOH A . D 3 HOH 7 407 7 HOH HOH A . D 3 HOH 8 408 8 HOH HOH A . D 3 HOH 9 409 9 HOH HOH A . D 3 HOH 10 410 10 HOH HOH A . D 3 HOH 11 411 11 HOH HOH A . D 3 HOH 12 412 12 HOH HOH A . D 3 HOH 13 413 13 HOH HOH A . D 3 HOH 14 414 14 HOH HOH A . D 3 HOH 15 415 15 HOH HOH A . D 3 HOH 16 416 16 HOH HOH A . D 3 HOH 17 417 17 HOH HOH A . D 3 HOH 18 418 18 HOH HOH A . D 3 HOH 19 419 19 HOH HOH A . D 3 HOH 20 420 20 HOH HOH A . D 3 HOH 21 421 21 HOH HOH A . D 3 HOH 22 422 22 HOH HOH A . D 3 HOH 23 423 23 HOH HOH A . D 3 HOH 24 424 24 HOH HOH A . D 3 HOH 25 425 25 HOH HOH A . D 3 HOH 26 426 26 HOH HOH A . D 3 HOH 27 427 27 HOH HOH A . D 3 HOH 28 428 28 HOH HOH A . D 3 HOH 29 429 29 HOH HOH A . D 3 HOH 30 430 30 HOH HOH A . D 3 HOH 31 431 31 HOH HOH A . D 3 HOH 32 432 32 HOH HOH A . D 3 HOH 33 433 33 HOH HOH A . D 3 HOH 34 434 34 HOH HOH A . D 3 HOH 35 435 35 HOH HOH A . D 3 HOH 36 436 36 HOH HOH A . D 3 HOH 37 437 37 HOH HOH A . D 3 HOH 38 438 38 HOH HOH A . D 3 HOH 39 439 39 HOH HOH A . D 3 HOH 40 440 40 HOH HOH A . D 3 HOH 41 441 41 HOH HOH A . D 3 HOH 42 442 42 HOH HOH A . D 3 HOH 43 443 43 HOH HOH A . D 3 HOH 44 444 45 HOH HOH A . D 3 HOH 45 445 46 HOH HOH A . D 3 HOH 46 446 47 HOH HOH A . D 3 HOH 47 447 48 HOH HOH A . D 3 HOH 48 448 49 HOH HOH A . D 3 HOH 49 449 50 HOH HOH A . D 3 HOH 50 450 51 HOH HOH A . D 3 HOH 51 451 53 HOH HOH A . D 3 HOH 52 452 54 HOH HOH A . D 3 HOH 53 453 56 HOH HOH A . D 3 HOH 54 454 57 HOH HOH A . D 3 HOH 55 455 58 HOH HOH A . D 3 HOH 56 456 59 HOH HOH A . D 3 HOH 57 457 60 HOH HOH A . D 3 HOH 58 458 61 HOH HOH A . D 3 HOH 59 459 62 HOH HOH A . D 3 HOH 60 460 63 HOH HOH A . D 3 HOH 61 461 64 HOH HOH A . D 3 HOH 62 462 65 HOH HOH A . D 3 HOH 63 463 68 HOH HOH A . D 3 HOH 64 464 69 HOH HOH A . D 3 HOH 65 465 70 HOH HOH A . D 3 HOH 66 466 71 HOH HOH A . D 3 HOH 67 467 73 HOH HOH A . D 3 HOH 68 468 74 HOH HOH A . D 3 HOH 69 469 76 HOH HOH A . D 3 HOH 70 470 78 HOH HOH A . D 3 HOH 71 471 80 HOH HOH A . D 3 HOH 72 472 81 HOH HOH A . D 3 HOH 73 473 83 HOH HOH A . D 3 HOH 74 474 84 HOH HOH A . D 3 HOH 75 475 85 HOH HOH A . D 3 HOH 76 476 87 HOH HOH A . D 3 HOH 77 477 88 HOH HOH A . D 3 HOH 78 478 89 HOH HOH A . D 3 HOH 79 479 92 HOH HOH A . D 3 HOH 80 480 93 HOH HOH A . D 3 HOH 81 481 94 HOH HOH A . D 3 HOH 82 482 95 HOH HOH A . D 3 HOH 83 483 96 HOH HOH A . D 3 HOH 84 484 97 HOH HOH A . D 3 HOH 85 485 99 HOH HOH A . D 3 HOH 86 486 100 HOH HOH A . D 3 HOH 87 487 101 HOH HOH A . D 3 HOH 88 488 102 HOH HOH A . D 3 HOH 89 489 103 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-03 2 'Structure model' 1 1 2012-11-28 3 'Structure model' 1 2 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_ref_seq_dif 6 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_ref_seq_dif.details' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -29.2936 _pdbx_refine_tls.origin_y 32.5466 _pdbx_refine_tls.origin_z 9.8554 _pdbx_refine_tls.T[1][1] 0.0189 _pdbx_refine_tls.T[2][2] 0.0194 _pdbx_refine_tls.T[3][3] 0.0074 _pdbx_refine_tls.T[1][2] -0.0079 _pdbx_refine_tls.T[1][3] 0.0011 _pdbx_refine_tls.T[2][3] -0.0031 _pdbx_refine_tls.L[1][1] 0.2090 _pdbx_refine_tls.L[2][2] 0.0320 _pdbx_refine_tls.L[3][3] 1.6712 _pdbx_refine_tls.L[1][2] 0.0195 _pdbx_refine_tls.L[1][3] 0.2033 _pdbx_refine_tls.L[2][3] -0.1884 _pdbx_refine_tls.S[1][1] 0.0174 _pdbx_refine_tls.S[2][2] -0.0245 _pdbx_refine_tls.S[3][3] 0.0070 _pdbx_refine_tls.S[1][2] -0.0221 _pdbx_refine_tls.S[1][3] 0.0173 _pdbx_refine_tls.S[2][3] 0.0030 _pdbx_refine_tls.S[2][1] 0.0072 _pdbx_refine_tls.S[3][1] -0.0503 _pdbx_refine_tls.S[3][2] 0.1364 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 11 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 194 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 HKL-2000 . ? ? ? ? 'data collection' ? ? ? 4 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 5 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? 6 MOLREP . ? ? ? ? phasing ? ? ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE2 A TRP 14 ? ? CD2 A TRP 14 ? ? 1.491 1.409 0.082 0.012 N 2 1 CG A HIS 96 ? ? CD2 A HIS 96 ? ? 1.418 1.354 0.064 0.009 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 126 ? ? CG A ASP 126 ? ? OD2 A ASP 126 ? ? 125.87 118.30 7.57 0.90 N 2 1 NE A ARG 176 ? ? CZ A ARG 176 ? ? NH1 A ARG 176 ? ? 117.04 120.30 -3.26 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 75 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -59.44 _pdbx_validate_torsion.psi 170.77 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -1 ? A GLY 1 2 1 Y 1 A SER 0 ? A SER 2 3 1 Y 1 A MET 1 ? A MET 3 4 1 Y 1 A THR 2 ? A THR 4 5 1 Y 1 A THR 3 ? A THR 5 6 1 Y 1 A THR 4 ? A THR 6 7 1 Y 1 A GLU 5 ? A GLU 7 8 1 Y 1 A THR 6 ? A THR 8 9 1 Y 1 A PRO 7 ? A PRO 9 10 1 Y 1 A LYS 8 ? A LYS 10 11 1 Y 1 A THR 9 ? A THR 11 12 1 Y 1 A ILE 10 ? A ILE 12 13 1 Y 1 A GLU 51 ? A GLU 53 14 1 Y 1 A ILE 52 ? A ILE 54 15 1 Y 1 A GLY 53 ? A GLY 55 16 1 Y 1 A ASP 54 ? A ASP 56 17 1 Y 1 A THR 55 ? A THR 57 18 1 Y 1 A PRO 56 ? A PRO 58 19 1 Y 1 A ASP 57 ? A ASP 59 20 1 Y 1 A TYR 195 ? A TYR 197 21 1 Y 1 A ARG 196 ? A ARG 198 22 1 Y 1 A PRO 197 ? A PRO 199 23 1 Y 1 A LYS 198 ? A LYS 200 24 1 Y 1 A THR 199 ? A THR 201 25 1 Y 1 A THR 200 ? A THR 202 26 1 Y 1 A GLN 201 ? A GLN 203 27 1 Y 1 A ASN 202 ? A ASN 204 28 1 Y 1 A PRO 203 ? A PRO 205 29 1 Y 1 A ASP 204 ? A ASP 206 30 1 Y 1 A SER 205 ? A SER 207 31 1 Y 1 A THR 206 ? A THR 208 32 1 Y 1 A THR 207 ? A THR 209 33 1 Y 1 A THR 208 ? A THR 210 34 1 Y 1 A THR 209 ? A THR 211 35 1 Y 1 A GLU 210 ? A GLU 212 36 1 Y 1 A LYS 211 ? A LYS 213 37 1 Y 1 A ASP 212 ? A ASP 214 38 1 Y 1 A ASN 213 ? A ASN 215 39 1 Y 1 A SER 214 ? A SER 216 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 EDO C1 C N N 74 EDO O1 O N N 75 EDO C2 C N N 76 EDO O2 O N N 77 EDO H11 H N N 78 EDO H12 H N N 79 EDO HO1 H N N 80 EDO H21 H N N 81 EDO H22 H N N 82 EDO HO2 H N N 83 GLN N N N N 84 GLN CA C N S 85 GLN C C N N 86 GLN O O N N 87 GLN CB C N N 88 GLN CG C N N 89 GLN CD C N N 90 GLN OE1 O N N 91 GLN NE2 N N N 92 GLN OXT O N N 93 GLN H H N N 94 GLN H2 H N N 95 GLN HA H N N 96 GLN HB2 H N N 97 GLN HB3 H N N 98 GLN HG2 H N N 99 GLN HG3 H N N 100 GLN HE21 H N N 101 GLN HE22 H N N 102 GLN HXT H N N 103 GLU N N N N 104 GLU CA C N S 105 GLU C C N N 106 GLU O O N N 107 GLU CB C N N 108 GLU CG C N N 109 GLU CD C N N 110 GLU OE1 O N N 111 GLU OE2 O N N 112 GLU OXT O N N 113 GLU H H N N 114 GLU H2 H N N 115 GLU HA H N N 116 GLU HB2 H N N 117 GLU HB3 H N N 118 GLU HG2 H N N 119 GLU HG3 H N N 120 GLU HE2 H N N 121 GLU HXT H N N 122 GLY N N N N 123 GLY CA C N N 124 GLY C C N N 125 GLY O O N N 126 GLY OXT O N N 127 GLY H H N N 128 GLY H2 H N N 129 GLY HA2 H N N 130 GLY HA3 H N N 131 GLY HXT H N N 132 HIS N N N N 133 HIS CA C N S 134 HIS C C N N 135 HIS O O N N 136 HIS CB C N N 137 HIS CG C Y N 138 HIS ND1 N Y N 139 HIS CD2 C Y N 140 HIS CE1 C Y N 141 HIS NE2 N Y N 142 HIS OXT O N N 143 HIS H H N N 144 HIS H2 H N N 145 HIS HA H N N 146 HIS HB2 H N N 147 HIS HB3 H N N 148 HIS HD1 H N N 149 HIS HD2 H N N 150 HIS HE1 H N N 151 HIS HE2 H N N 152 HIS HXT H N N 153 HOH O O N N 154 HOH H1 H N N 155 HOH H2 H N N 156 ILE N N N N 157 ILE CA C N S 158 ILE C C N N 159 ILE O O N N 160 ILE CB C N S 161 ILE CG1 C N N 162 ILE CG2 C N N 163 ILE CD1 C N N 164 ILE OXT O N N 165 ILE H H N N 166 ILE H2 H N N 167 ILE HA H N N 168 ILE HB H N N 169 ILE HG12 H N N 170 ILE HG13 H N N 171 ILE HG21 H N N 172 ILE HG22 H N N 173 ILE HG23 H N N 174 ILE HD11 H N N 175 ILE HD12 H N N 176 ILE HD13 H N N 177 ILE HXT H N N 178 LEU N N N N 179 LEU CA C N S 180 LEU C C N N 181 LEU O O N N 182 LEU CB C N N 183 LEU CG C N N 184 LEU CD1 C N N 185 LEU CD2 C N N 186 LEU OXT O N N 187 LEU H H N N 188 LEU H2 H N N 189 LEU HA H N N 190 LEU HB2 H N N 191 LEU HB3 H N N 192 LEU HG H N N 193 LEU HD11 H N N 194 LEU HD12 H N N 195 LEU HD13 H N N 196 LEU HD21 H N N 197 LEU HD22 H N N 198 LEU HD23 H N N 199 LEU HXT H N N 200 LYS N N N N 201 LYS CA C N S 202 LYS C C N N 203 LYS O O N N 204 LYS CB C N N 205 LYS CG C N N 206 LYS CD C N N 207 LYS CE C N N 208 LYS NZ N N N 209 LYS OXT O N N 210 LYS H H N N 211 LYS H2 H N N 212 LYS HA H N N 213 LYS HB2 H N N 214 LYS HB3 H N N 215 LYS HG2 H N N 216 LYS HG3 H N N 217 LYS HD2 H N N 218 LYS HD3 H N N 219 LYS HE2 H N N 220 LYS HE3 H N N 221 LYS HZ1 H N N 222 LYS HZ2 H N N 223 LYS HZ3 H N N 224 LYS HXT H N N 225 MET N N N N 226 MET CA C N S 227 MET C C N N 228 MET O O N N 229 MET CB C N N 230 MET CG C N N 231 MET SD S N N 232 MET CE C N N 233 MET OXT O N N 234 MET H H N N 235 MET H2 H N N 236 MET HA H N N 237 MET HB2 H N N 238 MET HB3 H N N 239 MET HG2 H N N 240 MET HG3 H N N 241 MET HE1 H N N 242 MET HE2 H N N 243 MET HE3 H N N 244 MET HXT H N N 245 PHE N N N N 246 PHE CA C N S 247 PHE C C N N 248 PHE O O N N 249 PHE CB C N N 250 PHE CG C Y N 251 PHE CD1 C Y N 252 PHE CD2 C Y N 253 PHE CE1 C Y N 254 PHE CE2 C Y N 255 PHE CZ C Y N 256 PHE OXT O N N 257 PHE H H N N 258 PHE H2 H N N 259 PHE HA H N N 260 PHE HB2 H N N 261 PHE HB3 H N N 262 PHE HD1 H N N 263 PHE HD2 H N N 264 PHE HE1 H N N 265 PHE HE2 H N N 266 PHE HZ H N N 267 PHE HXT H N N 268 PRO N N N N 269 PRO CA C N S 270 PRO C C N N 271 PRO O O N N 272 PRO CB C N N 273 PRO CG C N N 274 PRO CD C N N 275 PRO OXT O N N 276 PRO H H N N 277 PRO HA H N N 278 PRO HB2 H N N 279 PRO HB3 H N N 280 PRO HG2 H N N 281 PRO HG3 H N N 282 PRO HD2 H N N 283 PRO HD3 H N N 284 PRO HXT H N N 285 SER N N N N 286 SER CA C N S 287 SER C C N N 288 SER O O N N 289 SER CB C N N 290 SER OG O N N 291 SER OXT O N N 292 SER H H N N 293 SER H2 H N N 294 SER HA H N N 295 SER HB2 H N N 296 SER HB3 H N N 297 SER HG H N N 298 SER HXT H N N 299 THR N N N N 300 THR CA C N S 301 THR C C N N 302 THR O O N N 303 THR CB C N R 304 THR OG1 O N N 305 THR CG2 C N N 306 THR OXT O N N 307 THR H H N N 308 THR H2 H N N 309 THR HA H N N 310 THR HB H N N 311 THR HG1 H N N 312 THR HG21 H N N 313 THR HG22 H N N 314 THR HG23 H N N 315 THR HXT H N N 316 TRP N N N N 317 TRP CA C N S 318 TRP C C N N 319 TRP O O N N 320 TRP CB C N N 321 TRP CG C Y N 322 TRP CD1 C Y N 323 TRP CD2 C Y N 324 TRP NE1 N Y N 325 TRP CE2 C Y N 326 TRP CE3 C Y N 327 TRP CZ2 C Y N 328 TRP CZ3 C Y N 329 TRP CH2 C Y N 330 TRP OXT O N N 331 TRP H H N N 332 TRP H2 H N N 333 TRP HA H N N 334 TRP HB2 H N N 335 TRP HB3 H N N 336 TRP HD1 H N N 337 TRP HE1 H N N 338 TRP HE3 H N N 339 TRP HZ2 H N N 340 TRP HZ3 H N N 341 TRP HH2 H N N 342 TRP HXT H N N 343 TYR N N N N 344 TYR CA C N S 345 TYR C C N N 346 TYR O O N N 347 TYR CB C N N 348 TYR CG C Y N 349 TYR CD1 C Y N 350 TYR CD2 C Y N 351 TYR CE1 C Y N 352 TYR CE2 C Y N 353 TYR CZ C Y N 354 TYR OH O N N 355 TYR OXT O N N 356 TYR H H N N 357 TYR H2 H N N 358 TYR HA H N N 359 TYR HB2 H N N 360 TYR HB3 H N N 361 TYR HD1 H N N 362 TYR HD2 H N N 363 TYR HE1 H N N 364 TYR HE2 H N N 365 TYR HH H N N 366 TYR HXT H N N 367 VAL N N N N 368 VAL CA C N S 369 VAL C C N N 370 VAL O O N N 371 VAL CB C N N 372 VAL CG1 C N N 373 VAL CG2 C N N 374 VAL OXT O N N 375 VAL H H N N 376 VAL H2 H N N 377 VAL HA H N N 378 VAL HB H N N 379 VAL HG11 H N N 380 VAL HG12 H N N 381 VAL HG13 H N N 382 VAL HG21 H N N 383 VAL HG22 H N N 384 VAL HG23 H N N 385 VAL HXT H N N 386 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 EDO C1 O1 sing N N 70 EDO C1 C2 sing N N 71 EDO C1 H11 sing N N 72 EDO C1 H12 sing N N 73 EDO O1 HO1 sing N N 74 EDO C2 O2 sing N N 75 EDO C2 H21 sing N N 76 EDO C2 H22 sing N N 77 EDO O2 HO2 sing N N 78 GLN N CA sing N N 79 GLN N H sing N N 80 GLN N H2 sing N N 81 GLN CA C sing N N 82 GLN CA CB sing N N 83 GLN CA HA sing N N 84 GLN C O doub N N 85 GLN C OXT sing N N 86 GLN CB CG sing N N 87 GLN CB HB2 sing N N 88 GLN CB HB3 sing N N 89 GLN CG CD sing N N 90 GLN CG HG2 sing N N 91 GLN CG HG3 sing N N 92 GLN CD OE1 doub N N 93 GLN CD NE2 sing N N 94 GLN NE2 HE21 sing N N 95 GLN NE2 HE22 sing N N 96 GLN OXT HXT sing N N 97 GLU N CA sing N N 98 GLU N H sing N N 99 GLU N H2 sing N N 100 GLU CA C sing N N 101 GLU CA CB sing N N 102 GLU CA HA sing N N 103 GLU C O doub N N 104 GLU C OXT sing N N 105 GLU CB CG sing N N 106 GLU CB HB2 sing N N 107 GLU CB HB3 sing N N 108 GLU CG CD sing N N 109 GLU CG HG2 sing N N 110 GLU CG HG3 sing N N 111 GLU CD OE1 doub N N 112 GLU CD OE2 sing N N 113 GLU OE2 HE2 sing N N 114 GLU OXT HXT sing N N 115 GLY N CA sing N N 116 GLY N H sing N N 117 GLY N H2 sing N N 118 GLY CA C sing N N 119 GLY CA HA2 sing N N 120 GLY CA HA3 sing N N 121 GLY C O doub N N 122 GLY C OXT sing N N 123 GLY OXT HXT sing N N 124 HIS N CA sing N N 125 HIS N H sing N N 126 HIS N H2 sing N N 127 HIS CA C sing N N 128 HIS CA CB sing N N 129 HIS CA HA sing N N 130 HIS C O doub N N 131 HIS C OXT sing N N 132 HIS CB CG sing N N 133 HIS CB HB2 sing N N 134 HIS CB HB3 sing N N 135 HIS CG ND1 sing Y N 136 HIS CG CD2 doub Y N 137 HIS ND1 CE1 doub Y N 138 HIS ND1 HD1 sing N N 139 HIS CD2 NE2 sing Y N 140 HIS CD2 HD2 sing N N 141 HIS CE1 NE2 sing Y N 142 HIS CE1 HE1 sing N N 143 HIS NE2 HE2 sing N N 144 HIS OXT HXT sing N N 145 HOH O H1 sing N N 146 HOH O H2 sing N N 147 ILE N CA sing N N 148 ILE N H sing N N 149 ILE N H2 sing N N 150 ILE CA C sing N N 151 ILE CA CB sing N N 152 ILE CA HA sing N N 153 ILE C O doub N N 154 ILE C OXT sing N N 155 ILE CB CG1 sing N N 156 ILE CB CG2 sing N N 157 ILE CB HB sing N N 158 ILE CG1 CD1 sing N N 159 ILE CG1 HG12 sing N N 160 ILE CG1 HG13 sing N N 161 ILE CG2 HG21 sing N N 162 ILE CG2 HG22 sing N N 163 ILE CG2 HG23 sing N N 164 ILE CD1 HD11 sing N N 165 ILE CD1 HD12 sing N N 166 ILE CD1 HD13 sing N N 167 ILE OXT HXT sing N N 168 LEU N CA sing N N 169 LEU N H sing N N 170 LEU N H2 sing N N 171 LEU CA C sing N N 172 LEU CA CB sing N N 173 LEU CA HA sing N N 174 LEU C O doub N N 175 LEU C OXT sing N N 176 LEU CB CG sing N N 177 LEU CB HB2 sing N N 178 LEU CB HB3 sing N N 179 LEU CG CD1 sing N N 180 LEU CG CD2 sing N N 181 LEU CG HG sing N N 182 LEU CD1 HD11 sing N N 183 LEU CD1 HD12 sing N N 184 LEU CD1 HD13 sing N N 185 LEU CD2 HD21 sing N N 186 LEU CD2 HD22 sing N N 187 LEU CD2 HD23 sing N N 188 LEU OXT HXT sing N N 189 LYS N CA sing N N 190 LYS N H sing N N 191 LYS N H2 sing N N 192 LYS CA C sing N N 193 LYS CA CB sing N N 194 LYS CA HA sing N N 195 LYS C O doub N N 196 LYS C OXT sing N N 197 LYS CB CG sing N N 198 LYS CB HB2 sing N N 199 LYS CB HB3 sing N N 200 LYS CG CD sing N N 201 LYS CG HG2 sing N N 202 LYS CG HG3 sing N N 203 LYS CD CE sing N N 204 LYS CD HD2 sing N N 205 LYS CD HD3 sing N N 206 LYS CE NZ sing N N 207 LYS CE HE2 sing N N 208 LYS CE HE3 sing N N 209 LYS NZ HZ1 sing N N 210 LYS NZ HZ2 sing N N 211 LYS NZ HZ3 sing N N 212 LYS OXT HXT sing N N 213 MET N CA sing N N 214 MET N H sing N N 215 MET N H2 sing N N 216 MET CA C sing N N 217 MET CA CB sing N N 218 MET CA HA sing N N 219 MET C O doub N N 220 MET C OXT sing N N 221 MET CB CG sing N N 222 MET CB HB2 sing N N 223 MET CB HB3 sing N N 224 MET CG SD sing N N 225 MET CG HG2 sing N N 226 MET CG HG3 sing N N 227 MET SD CE sing N N 228 MET CE HE1 sing N N 229 MET CE HE2 sing N N 230 MET CE HE3 sing N N 231 MET OXT HXT sing N N 232 PHE N CA sing N N 233 PHE N H sing N N 234 PHE N H2 sing N N 235 PHE CA C sing N N 236 PHE CA CB sing N N 237 PHE CA HA sing N N 238 PHE C O doub N N 239 PHE C OXT sing N N 240 PHE CB CG sing N N 241 PHE CB HB2 sing N N 242 PHE CB HB3 sing N N 243 PHE CG CD1 doub Y N 244 PHE CG CD2 sing Y N 245 PHE CD1 CE1 sing Y N 246 PHE CD1 HD1 sing N N 247 PHE CD2 CE2 doub Y N 248 PHE CD2 HD2 sing N N 249 PHE CE1 CZ doub Y N 250 PHE CE1 HE1 sing N N 251 PHE CE2 CZ sing Y N 252 PHE CE2 HE2 sing N N 253 PHE CZ HZ sing N N 254 PHE OXT HXT sing N N 255 PRO N CA sing N N 256 PRO N CD sing N N 257 PRO N H sing N N 258 PRO CA C sing N N 259 PRO CA CB sing N N 260 PRO CA HA sing N N 261 PRO C O doub N N 262 PRO C OXT sing N N 263 PRO CB CG sing N N 264 PRO CB HB2 sing N N 265 PRO CB HB3 sing N N 266 PRO CG CD sing N N 267 PRO CG HG2 sing N N 268 PRO CG HG3 sing N N 269 PRO CD HD2 sing N N 270 PRO CD HD3 sing N N 271 PRO OXT HXT sing N N 272 SER N CA sing N N 273 SER N H sing N N 274 SER N H2 sing N N 275 SER CA C sing N N 276 SER CA CB sing N N 277 SER CA HA sing N N 278 SER C O doub N N 279 SER C OXT sing N N 280 SER CB OG sing N N 281 SER CB HB2 sing N N 282 SER CB HB3 sing N N 283 SER OG HG sing N N 284 SER OXT HXT sing N N 285 THR N CA sing N N 286 THR N H sing N N 287 THR N H2 sing N N 288 THR CA C sing N N 289 THR CA CB sing N N 290 THR CA HA sing N N 291 THR C O doub N N 292 THR C OXT sing N N 293 THR CB OG1 sing N N 294 THR CB CG2 sing N N 295 THR CB HB sing N N 296 THR OG1 HG1 sing N N 297 THR CG2 HG21 sing N N 298 THR CG2 HG22 sing N N 299 THR CG2 HG23 sing N N 300 THR OXT HXT sing N N 301 TRP N CA sing N N 302 TRP N H sing N N 303 TRP N H2 sing N N 304 TRP CA C sing N N 305 TRP CA CB sing N N 306 TRP CA HA sing N N 307 TRP C O doub N N 308 TRP C OXT sing N N 309 TRP CB CG sing N N 310 TRP CB HB2 sing N N 311 TRP CB HB3 sing N N 312 TRP CG CD1 doub Y N 313 TRP CG CD2 sing Y N 314 TRP CD1 NE1 sing Y N 315 TRP CD1 HD1 sing N N 316 TRP CD2 CE2 doub Y N 317 TRP CD2 CE3 sing Y N 318 TRP NE1 CE2 sing Y N 319 TRP NE1 HE1 sing N N 320 TRP CE2 CZ2 sing Y N 321 TRP CE3 CZ3 doub Y N 322 TRP CE3 HE3 sing N N 323 TRP CZ2 CH2 doub Y N 324 TRP CZ2 HZ2 sing N N 325 TRP CZ3 CH2 sing Y N 326 TRP CZ3 HZ3 sing N N 327 TRP CH2 HH2 sing N N 328 TRP OXT HXT sing N N 329 TYR N CA sing N N 330 TYR N H sing N N 331 TYR N H2 sing N N 332 TYR CA C sing N N 333 TYR CA CB sing N N 334 TYR CA HA sing N N 335 TYR C O doub N N 336 TYR C OXT sing N N 337 TYR CB CG sing N N 338 TYR CB HB2 sing N N 339 TYR CB HB3 sing N N 340 TYR CG CD1 doub Y N 341 TYR CG CD2 sing Y N 342 TYR CD1 CE1 sing Y N 343 TYR CD1 HD1 sing N N 344 TYR CD2 CE2 doub Y N 345 TYR CD2 HD2 sing N N 346 TYR CE1 CZ doub Y N 347 TYR CE1 HE1 sing N N 348 TYR CE2 CZ sing Y N 349 TYR CE2 HE2 sing N N 350 TYR CZ OH sing N N 351 TYR OH HH sing N N 352 TYR OXT HXT sing N N 353 VAL N CA sing N N 354 VAL N H sing N N 355 VAL N H2 sing N N 356 VAL CA C sing N N 357 VAL CA CB sing N N 358 VAL CA HA sing N N 359 VAL C O doub N N 360 VAL C OXT sing N N 361 VAL CB CG1 sing N N 362 VAL CB CG2 sing N N 363 VAL CB HB sing N N 364 VAL CG1 HG11 sing N N 365 VAL CG1 HG12 sing N N 366 VAL CG1 HG13 sing N N 367 VAL CG2 HG21 sing N N 368 VAL CG2 HG22 sing N N 369 VAL CG2 HG23 sing N N 370 VAL OXT HXT sing N N 371 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-ETHANEDIOL EDO 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2ZCA _pdbx_initial_refinement_model.details 'PDB ENTRY 2ZCA' #