HEADER TRANSFERASE 20-SEP-12 4H7O TITLE CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE FROM VIBRIO CHOLERAE O1 TITLE 2 BIOVAR EL TOR N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 EC: 2.3.1.30; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: N16961; SOURCE 5 GENE: SERINE ACETYLTRANSFERASE (EC:2.3.1.30), VC_2649; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21(C) KEYWDS ACETYLTRANSFERASE, CYSTEINE SYNTHASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.F.TARIQUE,S.A.ABDUL REHMAN,S.GOURINATH REVDAT 3 20-SEP-23 4H7O 1 REMARK SEQADV LINK REVDAT 2 24-JAN-18 4H7O 1 AUTHOR REVDAT 1 02-OCT-13 4H7O 0 JRNL AUTH K.F TARIQUE,S.A.ABDUL REHMAN,S.GOURINATH JRNL TITL CRYSTAL STRUCTURE OF SERINE ACETYLTRANSFERASE FROM VIBRIO JRNL TITL 2 CHOLERAE O1 BIOVAR EL TOR N16961. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 3 NUMBER OF REFLECTIONS : 38412 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.17 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2474 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5817 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 281 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.935 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.954 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5976 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8106 ; 1.373 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 771 ; 6.188 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 249 ;36.018 ;23.976 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 987 ;14.832 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;16.264 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 927 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4512 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4H7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.60 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.060 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1T3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG4000, 20% GLYCEROL, 0.03M REMARK 280 MGCL2,CACL2, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 273K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 72.02000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.52000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 72.02000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.52000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 43430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -169.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -1.23027 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -73.41969 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 GLN A 3 REMARK 465 CYS A 4 REMARK 465 ARG A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 THR A 266 REMARK 465 PHE A 267 REMARK 465 ILE A 268 REMARK 465 GLY A 269 REMARK 465 GLY A 270 REMARK 465 ASP A 271 REMARK 465 GLY A 272 REMARK 465 ILE A 273 REMARK 465 LEU A 274 REMARK 465 GLU A 275 REMARK 465 HIS A 276 REMARK 465 HIS A 277 REMARK 465 HIS A 278 REMARK 465 HIS A 279 REMARK 465 HIS A 280 REMARK 465 HIS A 281 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 GLN B 3 REMARK 465 CYS B 4 REMARK 465 ARG B 263 REMARK 465 SER B 264 REMARK 465 GLN B 265 REMARK 465 THR B 266 REMARK 465 PHE B 267 REMARK 465 ILE B 268 REMARK 465 GLY B 269 REMARK 465 GLY B 270 REMARK 465 ASP B 271 REMARK 465 GLY B 272 REMARK 465 ILE B 273 REMARK 465 LEU B 274 REMARK 465 GLU B 275 REMARK 465 HIS B 276 REMARK 465 HIS B 277 REMARK 465 HIS B 278 REMARK 465 HIS B 279 REMARK 465 HIS B 280 REMARK 465 HIS B 281 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 GLN C 3 REMARK 465 CYS C 4 REMARK 465 ARG C 263 REMARK 465 SER C 264 REMARK 465 GLN C 265 REMARK 465 THR C 266 REMARK 465 PHE C 267 REMARK 465 ILE C 268 REMARK 465 GLY C 269 REMARK 465 GLY C 270 REMARK 465 ASP C 271 REMARK 465 GLY C 272 REMARK 465 ILE C 273 REMARK 465 LEU C 274 REMARK 465 GLU C 275 REMARK 465 HIS C 276 REMARK 465 HIS C 277 REMARK 465 HIS C 278 REMARK 465 HIS C 279 REMARK 465 HIS C 280 REMARK 465 HIS C 281 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP B 119 CE2 TRP B 119 CD2 0.076 REMARK 500 HIS C 109 CG HIS C 109 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 158 -56.84 69.43 REMARK 500 ALA A 159 -26.19 85.67 REMARK 500 ARG A 192 12.89 -151.27 REMARK 500 HIS B 6 -67.18 -27.00 REMARK 500 HIS B 158 -60.90 74.38 REMARK 500 ALA B 159 -22.54 83.70 REMARK 500 ARG B 192 14.23 -159.93 REMARK 500 HIS C 158 -55.92 73.56 REMARK 500 ALA C 159 -20.70 80.57 REMARK 500 ARG C 192 15.00 -157.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 260 ASN A 261 -145.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 493 O REMARK 620 2 VAL C 89 O 86.6 REMARK 620 3 ASP C 92 O 82.3 111.8 REMARK 620 4 VAL C 95 O 167.7 97.6 85.4 REMARK 620 5 HOH C 492 O 98.4 146.3 101.9 84.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYS B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ARG C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C 302 DBREF 4H7O A 1 273 UNP Q9KNT2 Q9KNT2_VIBCH 1 273 DBREF 4H7O B 1 273 UNP Q9KNT2 Q9KNT2_VIBCH 1 273 DBREF 4H7O C 1 273 UNP Q9KNT2 Q9KNT2_VIBCH 1 273 SEQADV 4H7O LEU A 274 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O GLU A 275 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 276 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 277 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 278 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 279 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 280 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS A 281 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O LEU B 274 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O GLU B 275 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 276 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 277 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 278 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 279 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 280 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS B 281 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O LEU C 274 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O GLU C 275 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 276 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 277 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 278 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 279 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 280 UNP Q9KNT2 EXPRESSION TAG SEQADV 4H7O HIS C 281 UNP Q9KNT2 EXPRESSION TAG SEQRES 1 A 281 MET LYS GLN CYS ALA HIS THR LYS VAL TRP GLN THR ILE SEQRES 2 A 281 VAL ALA GLU ALA ARG GLU GLN ALA GLU GLN GLU PRO MET SEQRES 3 A 281 LEU ALA SER PHE TYR HIS ALA THR ILE ILE LYS HIS ASP SEQRES 4 A 281 SER LEU LYS ALA ALA LEU SER TYR ILE LEU ALA ASN ARG SEQRES 5 A 281 LEU ASN THR ALA SER MET PRO ALA MET ALA VAL ARG GLU SEQRES 6 A 281 VAL ILE GLU GLU ALA PHE ALA ALA ASP PRO SER ILE SER SEQRES 7 A 281 GLU ALA ALA ALA CYS ASP ILE CYS ALA THR VAL ASN ARG SEQRES 8 A 281 ASP PRO ALA VAL SER MET TYR SER MET PRO LEU LEU TYR SEQRES 9 A 281 LEU LYS GLY TYR HIS ALA LEU GLN GLY TYR ARG VAL ALA SEQRES 10 A 281 ASN TRP LEU TRP ARG GLN GLY ARG LYS ALA LEU ALA THR SEQRES 11 A 281 TYR PHE GLN ASN GLN ILE SER VAL ALA CYS GLN VAL ASP SEQRES 12 A 281 ILE HIS PRO ALA ALA ARG ILE GLY ARG GLY ILE MET LEU SEQRES 13 A 281 ASP HIS ALA THR GLY ILE VAL ILE GLY GLU THR ALA VAL SEQRES 14 A 281 VAL GLU ASP ASP VAL SER ILE LEU GLN ASP VAL THR LEU SEQRES 15 A 281 GLY GLY THR GLY LYS GLU CYS GLY ASP ARG HIS PRO LYS SEQRES 16 A 281 ILE ARG GLU GLY VAL MET ILE GLY ALA GLY ALA LYS ILE SEQRES 17 A 281 LEU GLY ASN ILE GLU VAL GLY GLU GLY ALA LYS ILE GLY SEQRES 18 A 281 SER GLY SER VAL VAL LEU GLN ALA VAL PRO PRO HIS THR SEQRES 19 A 281 THR VAL ALA GLY VAL PRO ALA ARG ILE VAL GLY ARG PRO SEQRES 20 A 281 GLN SER ASP LYS PRO SER LEU ASP MET ASP GLN GLN PHE SEQRES 21 A 281 ASN GLY ARG SER GLN THR PHE ILE GLY GLY ASP GLY ILE SEQRES 22 A 281 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 281 MET LYS GLN CYS ALA HIS THR LYS VAL TRP GLN THR ILE SEQRES 2 B 281 VAL ALA GLU ALA ARG GLU GLN ALA GLU GLN GLU PRO MET SEQRES 3 B 281 LEU ALA SER PHE TYR HIS ALA THR ILE ILE LYS HIS ASP SEQRES 4 B 281 SER LEU LYS ALA ALA LEU SER TYR ILE LEU ALA ASN ARG SEQRES 5 B 281 LEU ASN THR ALA SER MET PRO ALA MET ALA VAL ARG GLU SEQRES 6 B 281 VAL ILE GLU GLU ALA PHE ALA ALA ASP PRO SER ILE SER SEQRES 7 B 281 GLU ALA ALA ALA CYS ASP ILE CYS ALA THR VAL ASN ARG SEQRES 8 B 281 ASP PRO ALA VAL SER MET TYR SER MET PRO LEU LEU TYR SEQRES 9 B 281 LEU LYS GLY TYR HIS ALA LEU GLN GLY TYR ARG VAL ALA SEQRES 10 B 281 ASN TRP LEU TRP ARG GLN GLY ARG LYS ALA LEU ALA THR SEQRES 11 B 281 TYR PHE GLN ASN GLN ILE SER VAL ALA CYS GLN VAL ASP SEQRES 12 B 281 ILE HIS PRO ALA ALA ARG ILE GLY ARG GLY ILE MET LEU SEQRES 13 B 281 ASP HIS ALA THR GLY ILE VAL ILE GLY GLU THR ALA VAL SEQRES 14 B 281 VAL GLU ASP ASP VAL SER ILE LEU GLN ASP VAL THR LEU SEQRES 15 B 281 GLY GLY THR GLY LYS GLU CYS GLY ASP ARG HIS PRO LYS SEQRES 16 B 281 ILE ARG GLU GLY VAL MET ILE GLY ALA GLY ALA LYS ILE SEQRES 17 B 281 LEU GLY ASN ILE GLU VAL GLY GLU GLY ALA LYS ILE GLY SEQRES 18 B 281 SER GLY SER VAL VAL LEU GLN ALA VAL PRO PRO HIS THR SEQRES 19 B 281 THR VAL ALA GLY VAL PRO ALA ARG ILE VAL GLY ARG PRO SEQRES 20 B 281 GLN SER ASP LYS PRO SER LEU ASP MET ASP GLN GLN PHE SEQRES 21 B 281 ASN GLY ARG SER GLN THR PHE ILE GLY GLY ASP GLY ILE SEQRES 22 B 281 LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 C 281 MET LYS GLN CYS ALA HIS THR LYS VAL TRP GLN THR ILE SEQRES 2 C 281 VAL ALA GLU ALA ARG GLU GLN ALA GLU GLN GLU PRO MET SEQRES 3 C 281 LEU ALA SER PHE TYR HIS ALA THR ILE ILE LYS HIS ASP SEQRES 4 C 281 SER LEU LYS ALA ALA LEU SER TYR ILE LEU ALA ASN ARG SEQRES 5 C 281 LEU ASN THR ALA SER MET PRO ALA MET ALA VAL ARG GLU SEQRES 6 C 281 VAL ILE GLU GLU ALA PHE ALA ALA ASP PRO SER ILE SER SEQRES 7 C 281 GLU ALA ALA ALA CYS ASP ILE CYS ALA THR VAL ASN ARG SEQRES 8 C 281 ASP PRO ALA VAL SER MET TYR SER MET PRO LEU LEU TYR SEQRES 9 C 281 LEU LYS GLY TYR HIS ALA LEU GLN GLY TYR ARG VAL ALA SEQRES 10 C 281 ASN TRP LEU TRP ARG GLN GLY ARG LYS ALA LEU ALA THR SEQRES 11 C 281 TYR PHE GLN ASN GLN ILE SER VAL ALA CYS GLN VAL ASP SEQRES 12 C 281 ILE HIS PRO ALA ALA ARG ILE GLY ARG GLY ILE MET LEU SEQRES 13 C 281 ASP HIS ALA THR GLY ILE VAL ILE GLY GLU THR ALA VAL SEQRES 14 C 281 VAL GLU ASP ASP VAL SER ILE LEU GLN ASP VAL THR LEU SEQRES 15 C 281 GLY GLY THR GLY LYS GLU CYS GLY ASP ARG HIS PRO LYS SEQRES 16 C 281 ILE ARG GLU GLY VAL MET ILE GLY ALA GLY ALA LYS ILE SEQRES 17 C 281 LEU GLY ASN ILE GLU VAL GLY GLU GLY ALA LYS ILE GLY SEQRES 18 C 281 SER GLY SER VAL VAL LEU GLN ALA VAL PRO PRO HIS THR SEQRES 19 C 281 THR VAL ALA GLY VAL PRO ALA ARG ILE VAL GLY ARG PRO SEQRES 20 C 281 GLN SER ASP LYS PRO SER LEU ASP MET ASP GLN GLN PHE SEQRES 21 C 281 ASN GLY ARG SER GLN THR PHE ILE GLY GLY ASP GLY ILE SEQRES 22 C 281 LEU GLU HIS HIS HIS HIS HIS HIS HET CYS A 301 7 HET ARG A 302 12 HET CYS A 303 7 HET ARG B 301 12 HET CYS B 302 7 HET ARG C 301 12 HET NA C 302 1 HETNAM CYS CYSTEINE HETNAM ARG ARGININE HETNAM NA SODIUM ION FORMUL 4 CYS 3(C3 H7 N O2 S) FORMUL 5 ARG 3(C6 H15 N4 O2 1+) FORMUL 10 NA NA 1+ FORMUL 11 HOH *281(H2 O) HELIX 1 1 ALA A 5 GLU A 24 1 20 HELIX 2 2 LEU A 27 ILE A 35 1 9 HELIX 3 3 SER A 40 ASN A 54 1 15 HELIX 4 4 PRO A 59 ASP A 74 1 16 HELIX 5 5 PRO A 75 ASP A 92 1 18 HELIX 6 6 TYR A 98 LEU A 105 1 8 HELIX 7 7 LEU A 105 GLN A 123 1 19 HELIX 8 8 ARG A 125 GLN A 141 1 17 HELIX 9 9 LYS A 251 ASP A 255 5 5 HELIX 10 10 HIS B 6 GLU B 24 1 19 HELIX 11 11 LEU B 27 ILE B 35 1 9 HELIX 12 12 SER B 40 ASN B 54 1 15 HELIX 13 13 PRO B 59 ASP B 74 1 16 HELIX 14 14 PRO B 75 ASP B 92 1 18 HELIX 15 15 TYR B 98 LEU B 105 1 8 HELIX 16 16 LEU B 105 GLN B 123 1 19 HELIX 17 17 ARG B 125 CYS B 140 1 16 HELIX 18 18 LYS B 251 ASP B 255 5 5 HELIX 19 19 HIS C 6 GLU C 24 1 19 HELIX 20 20 LEU C 27 ILE C 35 1 9 HELIX 21 21 SER C 40 ASN C 54 1 15 HELIX 22 22 PRO C 59 ASP C 74 1 16 HELIX 23 23 PRO C 75 ASP C 92 1 18 HELIX 24 24 TYR C 98 LEU C 105 1 8 HELIX 25 25 LEU C 105 GLN C 123 1 19 HELIX 26 26 ARG C 125 GLN C 141 1 17 HELIX 27 27 LYS C 251 MET C 256 1 6 SHEET 1 A 5 VAL A 142 ILE A 144 0 SHEET 2 A 5 ILE A 162 ILE A 164 1 O ILE A 162 N ASP A 143 SHEET 3 A 5 THR A 181 GLY A 183 1 O LEU A 182 N VAL A 163 SHEET 4 A 5 LYS A 207 LEU A 209 1 O ILE A 208 N GLY A 183 SHEET 5 A 5 VAL A 225 VAL A 226 1 O VAL A 226 N LYS A 207 SHEET 1 B 4 ARG A 149 ILE A 150 0 SHEET 2 B 4 VAL A 169 VAL A 170 1 O VAL A 170 N ARG A 149 SHEET 3 B 4 LYS A 195 ILE A 196 1 O ILE A 196 N VAL A 169 SHEET 4 B 4 GLU A 213 VAL A 214 1 O VAL A 214 N LYS A 195 SHEET 1 C 6 MET A 155 LEU A 156 0 SHEET 2 C 6 SER A 175 ILE A 176 1 O ILE A 176 N MET A 155 SHEET 3 C 6 MET A 201 ILE A 202 1 O ILE A 202 N SER A 175 SHEET 4 C 6 LYS A 219 ILE A 220 1 O ILE A 220 N MET A 201 SHEET 5 C 6 THR A 235 ALA A 237 1 O VAL A 236 N LYS A 219 SHEET 6 C 6 ARG A 242 GLY A 245 -1 O VAL A 244 N THR A 235 SHEET 1 D 5 VAL B 142 ILE B 144 0 SHEET 2 D 5 ILE B 162 ILE B 164 1 O ILE B 164 N ASP B 143 SHEET 3 D 5 THR B 181 GLY B 183 1 O LEU B 182 N VAL B 163 SHEET 4 D 5 LYS B 207 LEU B 209 1 O ILE B 208 N GLY B 183 SHEET 5 D 5 VAL B 225 VAL B 226 1 O VAL B 226 N LYS B 207 SHEET 1 E 4 ARG B 149 ILE B 150 0 SHEET 2 E 4 VAL B 169 VAL B 170 1 O VAL B 170 N ARG B 149 SHEET 3 E 4 LYS B 195 ILE B 196 1 O ILE B 196 N VAL B 169 SHEET 4 E 4 GLU B 213 VAL B 214 1 O VAL B 214 N LYS B 195 SHEET 1 F 6 MET B 155 LEU B 156 0 SHEET 2 F 6 SER B 175 ILE B 176 1 O ILE B 176 N MET B 155 SHEET 3 F 6 MET B 201 ILE B 202 1 O ILE B 202 N SER B 175 SHEET 4 F 6 LYS B 219 ILE B 220 1 O ILE B 220 N MET B 201 SHEET 5 F 6 THR B 235 ALA B 237 1 O VAL B 236 N LYS B 219 SHEET 6 F 6 ARG B 242 GLY B 245 -1 O VAL B 244 N THR B 235 SHEET 1 G 5 ASP C 143 ILE C 144 0 SHEET 2 G 5 VAL C 163 ILE C 164 1 O ILE C 164 N ASP C 143 SHEET 3 G 5 THR C 181 GLY C 183 1 O LEU C 182 N VAL C 163 SHEET 4 G 5 LYS C 207 LEU C 209 1 O ILE C 208 N GLY C 183 SHEET 5 G 5 VAL C 225 VAL C 226 1 O VAL C 226 N LYS C 207 SHEET 1 H 4 ARG C 149 ILE C 150 0 SHEET 2 H 4 VAL C 169 VAL C 170 1 O VAL C 170 N ARG C 149 SHEET 3 H 4 LYS C 195 ILE C 196 1 O ILE C 196 N VAL C 169 SHEET 4 H 4 GLU C 213 VAL C 214 1 O VAL C 214 N LYS C 195 SHEET 1 I 6 MET C 155 ASP C 157 0 SHEET 2 I 6 SER C 175 LEU C 177 1 O ILE C 176 N MET C 155 SHEET 3 I 6 MET C 201 ILE C 202 1 O ILE C 202 N SER C 175 SHEET 4 I 6 LYS C 219 ILE C 220 1 O ILE C 220 N MET C 201 SHEET 5 I 6 THR C 235 ALA C 237 1 O VAL C 236 N LYS C 219 SHEET 6 I 6 ARG C 242 GLY C 245 -1 O VAL C 244 N THR C 235 LINK O HOH A 493 NA NA C 302 1555 1555 2.39 LINK O VAL C 89 NA NA C 302 1555 1555 2.20 LINK O ASP C 92 NA NA C 302 1555 1555 2.29 LINK O VAL C 95 NA NA C 302 1555 1555 2.21 LINK NA NA C 302 O HOH C 492 1555 1555 2.22 CISPEP 1 VAL A 239 PRO A 240 0 -1.69 CISPEP 2 VAL B 239 PRO B 240 0 -5.01 CISPEP 3 PHE B 260 ASN B 261 0 1.82 CISPEP 4 VAL C 239 PRO C 240 0 -2.65 SITE 1 AC1 9 GLY A 184 ARG A 192 HIS A 193 HOH A 401 SITE 2 AC1 9 HOH A 444 ASP C 92 ASP C 157 HIS C 158 SITE 3 AC1 9 HOH C 430 SITE 1 AC2 10 THR A 55 ALA A 56 SER A 57 TYR A 131 SITE 2 AC2 10 GLN A 135 HOH A 464 PHE C 30 ASN C 51 SITE 3 AC2 10 ARG C 52 HOH C 452 SITE 1 AC3 10 ASP A 92 PRO A 93 ASP A 157 HIS A 158 SITE 2 AC3 10 HOH A 477 GLY B 184 ARG B 192 HIS B 193 SITE 3 AC3 10 HOH B 411 HOH B 446 SITE 1 AC4 10 PHE A 30 ASN A 51 HOH A 466 THR B 55 SITE 2 AC4 10 ALA B 56 SER B 57 TYR B 131 ASN B 134 SITE 3 AC4 10 GLN B 135 HOH B 469 SITE 1 AC5 10 ASP B 92 PRO B 93 ALA B 94 ASP B 157 SITE 2 AC5 10 HIS B 158 HOH B 436 GLY C 184 ARG C 192 SITE 3 AC5 10 HIS C 193 HOH C 419 SITE 1 AC6 5 ASN B 51 SER C 57 TYR C 131 ASN C 134 SITE 2 AC6 5 GLN C 135 SITE 1 AC7 5 HOH A 493 VAL C 89 ASP C 92 VAL C 95 SITE 2 AC7 5 HOH C 492 CRYST1 144.040 75.040 73.430 90.00 89.04 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006943 0.000000 -0.000116 0.00000 SCALE2 0.000000 0.013326 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013620 0.00000