HEADER OXIDOREDUCTASE 20-SEP-12 4H7U TITLE CRYSTAL STRUCTURE OF PYRANOSE DEHYDROGENASE FROM AGARICUS MELEAGRIS, TITLE 2 WILDTYPE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRANOSE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.99.29; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEUCOAGARICUS MELEAGRIS; SOURCE 3 ORGANISM_TAXID: 201219; SOURCE 4 GENE: PDH1; SOURCE 5 EXPRESSION_SYSTEM: KOMAGATAELLA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: CBS 7435; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PYRANOSE DEHYDROGENASE, FLAVIN ADDUCT, GMC-OXIDOREDUCTASE FAMILY, KEYWDS 2 GLYCOPROTEIN, ROSSMANN FOLD/FAD-LINKED REDUCTASES/ALPHA AND BETA KEYWDS 3 PROTEINS (A+B), OXIDOREDUCTASE, FAD BINDING, FLAVIN C(4A) OXYGEN KEYWDS 4 ADDUCT, SECRETED EXPDTA X-RAY DIFFRACTION AUTHOR T.C.TAN,O.SPADIUT,C.DIVNE REVDAT 5 06-NOV-24 4H7U 1 REMARK REVDAT 4 20-SEP-23 4H7U 1 HETSYN REVDAT 3 29-JUL-20 4H7U 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 15-NOV-17 4H7U 1 REMARK REVDAT 1 07-AUG-13 4H7U 0 JRNL AUTH T.C.TAN,O.SPADIUT,T.WONGNATE,J.SUCHARITAKUL,I.KRONDORFER, JRNL AUTH 2 C.SYGMUND,D.HALTRICH,P.CHAIYEN,C.K.PETERBAUER,C.DIVNE JRNL TITL THE 1.6 A CRYSTAL STRUCTURE OF PYRANOSE DEHYDROGENASE FROM JRNL TITL 2 AGARICUS MELEAGRIS RATIONALIZES SUBSTRATE SPECIFICITY AND JRNL TITL 3 REVEALS A FLAVIN INTERMEDIATE. JRNL REF PLOS ONE V. 8 53567 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23326459 JRNL DOI 10.1371/JOURNAL.PONE.0053567 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 69857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2177 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 9490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 263 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 101 REMARK 3 SOLVENT ATOMS : 538 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.52000 REMARK 3 B33 (A**2) : 1.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.088 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.087 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.063 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.318 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4585 ; 0.016 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3002 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6258 ; 1.853 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7348 ; 1.632 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 576 ; 6.669 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;34.089 ;24.789 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;12.926 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;20.257 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 710 ; 0.150 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5090 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 888 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 51 REMARK 3 ORIGIN FOR THE GROUP (A): -0.3668 37.6722 -2.9097 REMARK 3 T TENSOR REMARK 3 T11: 0.0774 T22: 0.0444 REMARK 3 T33: 0.0140 T12: 0.0233 REMARK 3 T13: -0.0275 T23: -0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.6885 L22: 1.3931 REMARK 3 L33: 1.6221 L12: 0.1918 REMARK 3 L13: 0.1242 L23: 0.5857 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: 0.0942 S13: 0.0193 REMARK 3 S21: -0.2209 S22: -0.0145 S23: 0.1056 REMARK 3 S31: -0.2147 S32: -0.1553 S33: 0.0640 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 52 A 66 REMARK 3 ORIGIN FOR THE GROUP (A): -2.5792 21.4040 13.9815 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0648 REMARK 3 T33: 0.0610 T12: 0.0111 REMARK 3 T13: -0.0095 T23: -0.0469 REMARK 3 L TENSOR REMARK 3 L11: 5.8945 L22: 4.1802 REMARK 3 L33: 6.8392 L12: 1.0741 REMARK 3 L13: 1.1890 L23: -0.7829 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.4307 S13: -0.1854 REMARK 3 S21: -0.3754 S22: -0.0940 S23: 0.2344 REMARK 3 S31: 0.1559 S32: -0.2301 S33: 0.0401 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 67 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 13.4884 24.6165 12.9242 REMARK 3 T TENSOR REMARK 3 T11: 0.0291 T22: 0.0331 REMARK 3 T33: 0.0373 T12: -0.0041 REMARK 3 T13: 0.0049 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7790 L22: 0.2838 REMARK 3 L33: 0.3688 L12: -0.2236 REMARK 3 L13: 0.0628 L23: 0.1491 REMARK 3 S TENSOR REMARK 3 S11: 0.0292 S12: 0.0818 S13: -0.1039 REMARK 3 S21: -0.0607 S22: -0.0175 S23: 0.0065 REMARK 3 S31: 0.0184 S32: 0.0184 S33: -0.0117 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 3.3508 37.9721 28.1152 REMARK 3 T TENSOR REMARK 3 T11: 0.0376 T22: 0.0485 REMARK 3 T33: 0.0399 T12: 0.0121 REMARK 3 T13: 0.0080 T23: -0.0141 REMARK 3 L TENSOR REMARK 3 L11: 0.4963 L22: 0.4809 REMARK 3 L33: 0.5189 L12: 0.0488 REMARK 3 L13: 0.0185 L23: 0.1240 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0624 S13: 0.0427 REMARK 3 S21: 0.0292 S22: -0.0129 S23: 0.0568 REMARK 3 S31: -0.1014 S32: -0.0737 S33: 0.0202 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 227 A 312 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2512 35.7605 -6.1388 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0551 REMARK 3 T33: 0.0146 T12: -0.0171 REMARK 3 T13: 0.0053 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.9713 L22: 0.5269 REMARK 3 L33: 0.9134 L12: -0.0102 REMARK 3 L13: 0.1004 L23: 0.2978 REMARK 3 S TENSOR REMARK 3 S11: -0.0307 S12: 0.2078 S13: -0.0213 REMARK 3 S21: -0.1633 S22: 0.0378 S23: -0.0634 REMARK 3 S31: -0.1522 S32: 0.0971 S33: -0.0072 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 313 A 453 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1230 23.9190 23.8614 REMARK 3 T TENSOR REMARK 3 T11: 0.0320 T22: 0.0410 REMARK 3 T33: 0.0463 T12: -0.0039 REMARK 3 T13: 0.0005 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 0.5366 L22: 0.3232 REMARK 3 L33: 0.5984 L12: -0.0084 REMARK 3 L13: -0.1618 L23: 0.0146 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: -0.0212 S13: -0.0514 REMARK 3 S21: -0.0233 S22: 0.0134 S23: 0.0031 REMARK 3 S31: 0.0418 S32: 0.0281 S33: 0.0112 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 454 A 524 REMARK 3 ORIGIN FOR THE GROUP (A): 22.6762 25.0174 29.4581 REMARK 3 T TENSOR REMARK 3 T11: 0.0204 T22: 0.0861 REMARK 3 T33: 0.0537 T12: 0.0115 REMARK 3 T13: -0.0063 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.5174 L22: 0.6776 REMARK 3 L33: 0.8607 L12: 0.1369 REMARK 3 L13: -0.1409 L23: 0.0099 REMARK 3 S TENSOR REMARK 3 S11: -0.0105 S12: -0.1151 S13: -0.0802 REMARK 3 S21: 0.0709 S22: 0.0170 S23: -0.0778 REMARK 3 S31: 0.0471 S32: 0.1235 S33: -0.0065 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 525 A 577 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2516 44.8252 7.9671 REMARK 3 T TENSOR REMARK 3 T11: 0.1104 T22: 0.0216 REMARK 3 T33: 0.0381 T12: -0.0143 REMARK 3 T13: -0.0010 T23: -0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.7750 L22: 0.8920 REMARK 3 L33: 1.5226 L12: 0.1402 REMARK 3 L13: -0.2967 L23: -0.3442 REMARK 3 S TENSOR REMARK 3 S11: -0.0086 S12: 0.0557 S13: 0.1066 REMARK 3 S21: -0.1333 S22: 0.0153 S23: -0.0070 REMARK 3 S31: -0.2463 S32: 0.0095 S33: -0.0067 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4H7U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.90772 REMARK 200 MONOCHROMATOR : BENT SI (220) CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72035 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.84100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 2JBV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM KH2PO4, 5% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, 20% (W/V) POLYETHYLENE GLYCOL 8000, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.96900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.64300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.32000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.64300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.96900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.32000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -24 REMARK 465 LEU A -23 REMARK 465 PRO A -22 REMARK 465 ARG A -21 REMARK 465 VAL A -20 REMARK 465 THR A -19 REMARK 465 LYS A -18 REMARK 465 LEU A -17 REMARK 465 ASN A -16 REMARK 465 SER A -15 REMARK 465 ARG A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 SER A -11 REMARK 465 LEU A -10 REMARK 465 ALA A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 GLY A -6 REMARK 465 ILE A -5 REMARK 465 GLN A -4 REMARK 465 ILE A -3 REMARK 465 ALA A -2 REMARK 465 ARG A -1 REMARK 465 GLY A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 6 CG HIS A 6 CD2 0.081 REMARK 500 HIS A 556 CG HIS A 556 CD2 0.057 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 433 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG A 464 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 504 CG - CD - NE ANGL. DEV. = -16.0 DEGREES REMARK 500 ARG A 504 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 53 19.46 48.87 REMARK 500 ILE A 96 148.14 -178.26 REMARK 500 ALA A 171 47.76 -143.81 REMARK 500 LEU A 189 55.91 -118.33 REMARK 500 LYS A 276 -72.86 -110.37 REMARK 500 ALA A 281 42.01 -145.68 REMARK 500 SER A 351 -10.50 -142.89 REMARK 500 ARG A 418 -68.61 -98.48 REMARK 500 TYR A 429 74.66 -118.12 REMARK 500 ASN A 481 -10.83 64.94 REMARK 500 ASN A 484 -127.03 -111.73 REMARK 500 ASP A 545 -169.36 -176.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 4H7U A -24 577 UNP Q3L245 Q3L245_9AGAR 1 602 SEQRES 1 A 602 MET LEU PRO ARG VAL THR LYS LEU ASN SER ARG LEU LEU SEQRES 2 A 602 SER LEU ALA LEU LEU GLY ILE GLN ILE ALA ARG GLY ALA SEQRES 3 A 602 ILE THR TYR GLN HIS PRO ASP ASP LEU PRO SER GLY VAL SEQRES 4 A 602 ASP TYR ASP PHE ILE VAL ALA GLY GLY GLY THR ALA GLY SEQRES 5 A 602 LEU VAL VAL ALA SER ARG LEU SER GLU ASN SER ASN TRP SEQRES 6 A 602 LYS VAL LEU VAL ILE GLU ALA GLY PRO SER ASN LYS ASP SEQRES 7 A 602 ALA PHE VAL THR ARG VAL PRO GLY LEU ALA SER THR LEU SEQRES 8 A 602 GLY ALA GLY SER PRO ILE ASP TRP ASN TYR THR THR ILE SEQRES 9 A 602 PRO GLN ASP GLY LEU ASP GLY ARG SER LEU ASP TYR PRO SEQRES 10 A 602 ARG ALA LYS ILE LEU GLY GLY CYS SER THR HIS ASN GLY SEQRES 11 A 602 MET VAL TYR THR ARG GLY SER LYS ASP ASP TRP ASN SER SEQRES 12 A 602 TRP ALA GLY ILE ILE GLY ASP GLN GLY LEU GLY TRP ASP SEQRES 13 A 602 SER ILE LEU PRO ALA ILE LYS LYS ALA GLU LYS PHE THR SEQRES 14 A 602 GLN ASP PHE THR ASP GLN SER VAL LYS GLY HIS ILE ASP SEQRES 15 A 602 PRO SER VAL HIS GLY PHE ASP GLY LYS LEU SER VAL SER SEQRES 16 A 602 ALA ALA TYR SER ASN ILE SER PHE ASN ASP LEU LEU PHE SEQRES 17 A 602 GLU THR THR LYS GLU LEU ASN ALA GLU PHE PRO PHE LYS SEQRES 18 A 602 LEU ASP MET ASN ASP GLY LYS PRO ILE GLY LEU GLY TRP SEQRES 19 A 602 THR GLN TYR THR ILE ASP ASN HIS ALA GLU ARG SER SER SEQRES 20 A 602 SER ALA THR SER TYR LEU GLU SER THR GLY ASP ASN VAL SEQRES 21 A 602 HIS VAL LEU VAL ASN THR LEU VAL THR ARG VAL LEU SER SEQRES 22 A 602 ALA SER GLY ASN GLY THR ASP PHE ARG LYS VAL GLU PHE SEQRES 23 A 602 ALA VAL ASP ALA ASN SER PRO LYS LYS GLN LEU GLU ALA SEQRES 24 A 602 LYS LYS GLU VAL ILE VAL ALA GLY GLY VAL ILE ALA SER SEQRES 25 A 602 PRO GLN ILE LEU MET ASN SER GLY ILE GLY GLU ARG LYS SEQRES 26 A 602 VAL LEU GLN ALA VAL GLY ILE ASP THR LEU ILE ASP ASN SEQRES 27 A 602 PRO SER VAL GLY LYS ASN LEU SER ASP GLN GLY ALA THR SEQRES 28 A 602 SER VAL MET PHE ASP THR THR LEU PRO SER THR ASP PHE SEQRES 29 A 602 ASP VAL ASP ALA ALA LEU THR GLU TRP THR ASN SER HIS SEQRES 30 A 602 THR GLY PRO LEU ALA ARG GLY ALA ARG LEU ASN HIS LEU SEQRES 31 A 602 THR PHE VAL ARG LEU PRO ASP ASP LYS LEU ASN GLY GLN SEQRES 32 A 602 ASP PRO SER SER GLY LYS ASN SER PRO HIS ILE GLU PHE SEQRES 33 A 602 GLN PHE ALA GLN ILE THR PRO GLN VAL PRO THR LEU GLY SEQRES 34 A 602 VAL PRO LYS GLN ALA PRO LEU PRO ALA ALA ASN SER TYR SEQRES 35 A 602 ARG LEU LEU LEU GLN LEU ALA VAL VAL ASN LEU TYR SER SEQRES 36 A 602 ILE SER ARG GLY SER ILE SER LEU SER ASP ASN ASN PRO SEQRES 37 A 602 PHE THR TYR PRO LEU ILE ASP LEU ASN MET PHE LYS GLU SEQRES 38 A 602 ASP ILE ASP ILE ALA ILE LEU ARG GLU GLY ILE ARG SER SEQRES 39 A 602 ALA GLY ARG MET PHE SER SER LYS ALA PHE LYS ASN SER SEQRES 40 A 602 VAL ASN LYS PHE VAL TYR PRO PRO ALA ASP ALA THR SER SEQRES 41 A 602 ASP GLU ASP LEU ASP ALA PHE LEU ARG SER SER THR PHE SEQRES 42 A 602 SER TYR VAL HIS GLY VAL GLY THR LEU SER MET SER PRO SEQRES 43 A 602 LYS GLY ALA SER TRP GLY VAL VAL ASN PRO ASP PHE LYS SEQRES 44 A 602 VAL LYS GLY THR SER GLY LEU ARG VAL VAL ASP ALA SER SEQRES 45 A 602 VAL ILE PRO HIS ALA PRO ALA ALA HIS THR GLN LEU PRO SEQRES 46 A 602 VAL TYR ALA PHE ALA GLU TYR ALA SER ALA LEU ILE ALA SEQRES 47 A 602 LYS SER TYR ASN MODRES 4H7U ASN A 319 ASN GLYCOSYLATION SITE MODRES 4H7U ASN A 75 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FED A 801 54 HET NAG A 802 14 HET PO4 A 805 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FED [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 2 FED DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S)-2,3,4- HETNAM 3 FED TRIHYDROXY-5-[(4AR)-4A-HYDROXY-7,8-DIMETHYL-2,4-DIOXO- HETNAM 4 FED 3,4,4A,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]PENTYL HETNAM 5 FED DIHYDROGEN DIPHOSPHATE (NON-PREFERRED NAME) HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 3(C8 H15 N O6) FORMUL 3 FED C27 H35 N9 O16 P2 FORMUL 5 PO4 O4 P 3- FORMUL 6 HOH *538(H2 O) HELIX 1 1 HIS A 6 LEU A 10 5 5 HELIX 2 2 GLY A 24 SER A 35 1 12 HELIX 3 3 ALA A 54 VAL A 59 1 6 HELIX 4 4 PRO A 60 LEU A 66 5 7 HELIX 5 5 GLY A 98 HIS A 103 5 6 HELIX 6 6 SER A 112 GLY A 124 1 13 HELIX 7 7 ASP A 125 LEU A 128 5 4 HELIX 8 8 GLY A 129 ALA A 140 1 12 HELIX 9 9 ASP A 157 HIS A 161 5 5 HELIX 10 10 ILE A 176 LEU A 189 1 14 HELIX 11 11 SER A 222 TYR A 227 1 6 HELIX 12 12 GLY A 282 SER A 294 1 13 HELIX 13 13 GLU A 298 VAL A 305 1 8 HELIX 14 14 ASP A 340 HIS A 352 1 13 HELIX 15 15 GLY A 354 ARG A 358 5 5 HELIX 16 16 PRO A 371 LEU A 375 5 5 HELIX 17 17 ALA A 413 TYR A 417 5 5 HELIX 18 18 GLU A 456 SER A 475 1 20 HELIX 19 19 SER A 476 LYS A 480 5 5 HELIX 20 20 SER A 495 THR A 507 1 13 HELIX 21 21 ASP A 545 ILE A 549 5 5 HELIX 22 22 THR A 557 TYR A 576 1 20 SHEET 1 A 6 ILE A 2 TYR A 4 0 SHEET 2 A 6 VAL A 235 LEU A 238 1 O VAL A 237 N TYR A 4 SHEET 3 A 6 VAL A 42 ILE A 45 1 N VAL A 44 O LEU A 238 SHEET 4 A 6 PHE A 18 ALA A 21 1 N VAL A 20 O ILE A 45 SHEET 5 A 6 GLU A 277 VAL A 280 1 O ILE A 279 N ILE A 19 SHEET 6 A 6 LEU A 541 VAL A 543 1 O ARG A 542 N VAL A 280 SHEET 1 B 2 GLU A 141 PHE A 143 0 SHEET 2 B 2 LEU A 167 VAL A 169 1 O LEU A 167 N LYS A 142 SHEET 1 C 6 GLY A 206 TRP A 209 0 SHEET 2 C 6 HIS A 364 VAL A 368 -1 O PHE A 367 N GLY A 206 SHEET 3 C 6 ILE A 389 THR A 397 -1 O ILE A 389 N VAL A 368 SHEET 4 C 6 LEU A 419 ASN A 427 -1 O GLN A 422 N GLN A 395 SHEET 5 C 6 GLY A 324 THR A 332 -1 N THR A 326 O VAL A 425 SHEET 6 C 6 VAL A 483 TYR A 488 -1 O ASN A 484 N ASP A 331 SHEET 1 D 6 GLY A 206 TRP A 209 0 SHEET 2 D 6 HIS A 364 VAL A 368 -1 O PHE A 367 N GLY A 206 SHEET 3 D 6 ILE A 389 THR A 397 -1 O ILE A 389 N VAL A 368 SHEET 4 D 6 LEU A 419 ASN A 427 -1 O GLN A 422 N GLN A 395 SHEET 5 D 6 GLY A 324 THR A 332 -1 N THR A 326 O VAL A 425 SHEET 6 D 6 PHE A 508 SER A 509 -1 O PHE A 508 N ALA A 325 SHEET 1 E 3 LEU A 242 LEU A 247 0 SHEET 2 E 3 LYS A 258 ALA A 262 -1 O GLU A 260 N ARG A 245 SHEET 3 E 3 LYS A 270 GLU A 273 -1 O LEU A 272 N VAL A 259 SHEET 1 F 2 ILE A 296 GLY A 297 0 SHEET 2 F 2 ILE A 311 ASP A 312 1 O ILE A 311 N GLY A 297 SHEET 1 G 3 LYS A 318 LEU A 320 0 SHEET 2 G 3 GLY A 434 SER A 437 -1 O GLY A 434 N LEU A 320 SHEET 3 G 3 LEU A 448 ASP A 450 -1 O LEU A 448 N SER A 437 LINK ND2 ASN A 75 C1 NAG A 802 1555 1555 1.46 LINK NE2 HIS A 103 C8M FED A 801 1555 1555 1.47 LINK ND2 ASN A 319 C1 NAG B 1 1555 1555 1.44 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.42 CISPEP 1 TYR A 488 PRO A 489 0 -0.66 CRYST1 51.938 74.640 139.286 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019254 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013398 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007179 0.00000