HEADER OXIDOREDUCTASE 21-SEP-12 4H86 TITLE CRYSTAL STRUCTURE OF AHP1 FROM SACCHAROMYCES CEREVISIAE IN REDUCED TITLE 2 FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROXIREDOXIN TYPE-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AHPC1, CYTOPLASMIC THIOL PEROXIDASE 3, CTPX 3, PEROXIREDOXIN COMPND 5 TYPE II, PEROXISOMAL ALKYL HYDROPEROXIDE REDUCTASE, TPX TYPE II, COMPND 6 THIOL-SPECIFIC ANTIOXIDANT II, TSA II, THIOREDOXIN PEROXIDASE TYPE COMPND 7 II, THIOREDOXIN REDUCTASE TYPE II; COMPND 8 EC: 1.11.1.15; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: AHP1, YLR109W, L2916, L9354.5; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS OXIDOREDUCTASE, PEROXIREDOXIN TYPE-2 EXPDTA X-RAY DIFFRACTION AUTHOR M.LIU,F.WANG,R.QIU,T.WU,S.GU,R.TANG,C.JI REVDAT 3 08-NOV-23 4H86 1 SEQADV REVDAT 2 15-NOV-17 4H86 1 REMARK REVDAT 1 10-OCT-12 4H86 0 JRNL AUTH M.LIU,F.WANG,R.QIU,T.WU,S.GU,R.TANG,C.JI JRNL TITL CRYSTAL STRUCTURE OF AHP1 FROM SACCHAROMYCES CEREVISIAE IN JRNL TITL 2 REDUCED FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 37007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.1366 - 4.7076 1.00 2819 150 0.1714 0.1795 REMARK 3 2 4.7076 - 3.7379 1.00 2715 147 0.1261 0.1390 REMARK 3 3 3.7379 - 3.2658 1.00 2721 142 0.1388 0.1448 REMARK 3 4 3.2658 - 2.9674 1.00 2710 148 0.1591 0.1722 REMARK 3 5 2.9674 - 2.7548 1.00 2689 140 0.1655 0.1664 REMARK 3 6 2.7548 - 2.5924 1.00 2685 143 0.1744 0.2067 REMARK 3 7 2.5924 - 2.4626 1.00 2703 141 0.1726 0.2420 REMARK 3 8 2.4626 - 2.3555 1.00 2666 145 0.1727 0.2006 REMARK 3 9 2.3555 - 2.2648 1.00 2676 141 0.1759 0.1800 REMARK 3 10 2.2648 - 2.1867 1.00 2707 143 0.1652 0.2005 REMARK 3 11 2.1867 - 2.1183 1.00 2677 140 0.1630 0.1859 REMARK 3 12 2.1183 - 2.0578 1.00 2686 145 0.1719 0.2169 REMARK 3 13 2.0578 - 2.0036 1.00 2690 138 0.1862 0.2048 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1484 REMARK 3 ANGLE : 0.907 2024 REMARK 3 CHIRALITY : 0.066 230 REMARK 3 PLANARITY : 0.004 260 REMARK 3 DIHEDRAL : 11.438 530 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4H86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97915 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37056 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 44.80 REMARK 200 R MERGE (I) : 0.12500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 45.00 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRIES 1TP9, 3UMA, 1NM3 AND 2PWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 80.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION (40 MG/ML AHP1 REMARK 280 PROTEIN, IN MILLI-Q WATER CONTAINING 10MM DTT) MIXED IN A 1:1 REMARK 280 RATIO WITH THE WELL SOLUTION (0.1 M BIS-TRIS PH 5.4, 2.0 M REMARK 280 AMMONIUM SULFATE) CRYOPROTECTED WITH 20% GLYCEROL , VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 74.52450 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 74.52450 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 74.52450 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 74.52450 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 74.52450 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 149.04900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 223.57350 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 236 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 433 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 141 O PRO A 160 2.08 REMARK 500 O HOH A 374 O HOH A 444 2.08 REMARK 500 O HOH A 368 O HOH A 375 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 238 O HOH A 444 16566 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A -7 -154.18 -76.09 REMARK 500 PHE A 58 -4.16 75.35 REMARK 500 HIS A 66 -68.42 -96.70 REMARK 500 THR A 165 -85.04 -126.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DSQ RELATED DB: PDB REMARK 900 RELATED ID: 4DSR RELATED DB: PDB REMARK 900 RELATED ID: 4DSS RELATED DB: PDB DBREF 4H86 A 1 176 UNP P38013 AHP1_YEAST 1 176 SEQADV 4H86 MET A -22 UNP P38013 EXPRESSION TAG SEQADV 4H86 GLY A -21 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A -20 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A -19 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -18 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -17 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -16 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -15 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -14 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -13 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A -12 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A -11 UNP P38013 EXPRESSION TAG SEQADV 4H86 GLY A -10 UNP P38013 EXPRESSION TAG SEQADV 4H86 LEU A -9 UNP P38013 EXPRESSION TAG SEQADV 4H86 VAL A -8 UNP P38013 EXPRESSION TAG SEQADV 4H86 PRO A -7 UNP P38013 EXPRESSION TAG SEQADV 4H86 ARG A -6 UNP P38013 EXPRESSION TAG SEQADV 4H86 GLY A -5 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A -4 UNP P38013 EXPRESSION TAG SEQADV 4H86 HIS A -3 UNP P38013 EXPRESSION TAG SEQADV 4H86 MET A -2 UNP P38013 EXPRESSION TAG SEQADV 4H86 ALA A -1 UNP P38013 EXPRESSION TAG SEQADV 4H86 SER A 0 UNP P38013 EXPRESSION TAG SEQRES 1 A 199 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 199 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET SER ASP SEQRES 3 A 199 LEU VAL ASN LYS LYS PHE PRO ALA GLY ASP TYR LYS PHE SEQRES 4 A 199 GLN TYR ILE ALA ILE SER GLN SER ASP ALA ASP SER GLU SEQRES 5 A 199 SER CYS LYS MET PRO GLN THR VAL GLU TRP SER LYS LEU SEQRES 6 A 199 ILE SER GLU ASN LYS LYS VAL ILE ILE THR GLY ALA PRO SEQRES 7 A 199 ALA ALA PHE SER PRO THR CYS THR VAL SER HIS ILE PRO SEQRES 8 A 199 GLY TYR ILE ASN TYR LEU ASP GLU LEU VAL LYS GLU LYS SEQRES 9 A 199 GLU VAL ASP GLN VAL ILE VAL VAL THR VAL ASP ASN PRO SEQRES 10 A 199 PHE ALA ASN GLN ALA TRP ALA LYS SER LEU GLY VAL LYS SEQRES 11 A 199 ASP THR THR HIS ILE LYS PHE ALA SER ASP PRO GLY CYS SEQRES 12 A 199 ALA PHE THR LYS SER ILE GLY PHE GLU LEU ALA VAL GLY SEQRES 13 A 199 ASP GLY VAL TYR TRP SER GLY ARG TRP ALA MET VAL VAL SEQRES 14 A 199 GLU ASN GLY ILE VAL THR TYR ALA ALA LYS GLU THR ASN SEQRES 15 A 199 PRO GLY THR ASP VAL THR VAL SER SER VAL GLU SER VAL SEQRES 16 A 199 LEU ALA HIS LEU FORMUL 2 HOH *246(H2 O) HELIX 1 1 SER A 28 LYS A 32 5 5 HELIX 2 2 TRP A 39 ASN A 46 1 8 HELIX 3 3 SER A 59 SER A 65 1 7 HELIX 4 4 HIS A 66 LYS A 81 1 16 HELIX 5 5 ASN A 93 LEU A 104 1 12 HELIX 6 6 CYS A 120 ILE A 126 1 7 HELIX 7 7 SER A 168 ALA A 174 1 7 SHEET 1 A 2 LYS A 15 TYR A 18 0 SHEET 2 A 2 GLN A 35 GLU A 38 -1 O VAL A 37 N PHE A 16 SHEET 1 B 5 ILE A 112 SER A 116 0 SHEET 2 B 5 GLN A 85 THR A 90 1 N VAL A 88 O LYS A 113 SHEET 3 B 5 LYS A 48 GLY A 53 1 N ILE A 50 O ILE A 87 SHEET 4 B 5 TRP A 142 GLU A 147 -1 O VAL A 146 N VAL A 49 SHEET 5 B 5 ILE A 150 LYS A 156 -1 O ILE A 150 N GLU A 147 SHEET 1 C 2 GLU A 129 GLY A 133 0 SHEET 2 C 2 VAL A 136 SER A 139 -1 O TRP A 138 N LEU A 130 CRYST1 149.049 149.049 149.049 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006709 0.00000