HEADER OXIDOREDUCTASE 25-SEP-12 4HA6 TITLE CRYSTAL STRUCTURE OF PYRIDOXINE 4-OXIDASE - PYRIDOXAMINE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: PYRIDOXINE 4-OXIDASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 17-520; COMPND 5 EC: 1.1.3.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 381; SOURCE 4 GENE: MLL6785, PNO; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTRC99A KEYWDS SUBSTRATE BINDING DOMAIN, FAD BINDING DOMAIN, BETA ALPHA BETA FOLD, KEYWDS 2 SUBSTRATE ACCESS TUNNEL, ADP BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.N.MUGO,J.KOBAYASHI,B.MIKAMI,T.YAGI REVDAT 2 08-NOV-23 4HA6 1 REMARK SEQADV LINK REVDAT 1 05-JUN-13 4HA6 0 JRNL AUTH A.N.MUGO,J.KOBAYASHI,T.YAMASAKI,B.MIKAMI,K.OHNISHI, JRNL AUTH 2 Y.YOSHIKANE,T.YAGI JRNL TITL CRYSTAL STRUCTURE OF PYRIDOXINE 4-OXIDASE FROM MESORHIZOBIUM JRNL TITL 2 LOTI. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1834 953 2013 JRNL REFN ISSN 0006-3002 JRNL PMID 23501672 JRNL DOI 10.1016/J.BBAPAP.2013.03.004 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 38074 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.7095 - 5.0456 0.98 2882 142 0.1795 0.2303 REMARK 3 2 5.0456 - 4.0061 0.94 2608 128 0.1453 0.1596 REMARK 3 3 4.0061 - 3.5000 0.93 2570 131 0.1603 0.1874 REMARK 3 4 3.5000 - 3.1802 0.93 2531 142 0.1774 0.2305 REMARK 3 5 3.1802 - 2.9523 0.93 2536 126 0.1975 0.2514 REMARK 3 6 2.9523 - 2.7783 0.93 2526 128 0.2048 0.2776 REMARK 3 7 2.7783 - 2.6392 0.94 2546 117 0.2024 0.2307 REMARK 3 8 2.6392 - 2.5243 0.93 2506 148 0.2060 0.2774 REMARK 3 9 2.5243 - 2.4272 0.95 2578 122 0.1971 0.2360 REMARK 3 10 2.4272 - 2.3434 0.95 2545 146 0.2044 0.2658 REMARK 3 11 2.3434 - 2.2701 0.96 2592 128 0.2105 0.2433 REMARK 3 12 2.2701 - 2.2053 0.96 2565 155 0.2151 0.2840 REMARK 3 13 2.2053 - 2.1472 0.97 2590 142 0.2143 0.2871 REMARK 3 14 2.1472 - 2.0948 0.97 2590 154 0.2219 0.2941 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.240 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.12 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4126 REMARK 3 ANGLE : 1.237 5614 REMARK 3 CHIRALITY : 0.079 596 REMARK 3 PLANARITY : 0.005 740 REMARK 3 DIHEDRAL : 16.821 1547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075212. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL38B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38074 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.095 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.13200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 (MOLREP) REMARK 200 STARTING MODEL: 3T37 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES NA-SALT(PH 7.5) 0.1M, 2-PROPANOL REMARK 280 10%,PEG 4000 24%, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.24450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.60950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.58450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.60950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.24450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.58450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -62.48900 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -39.58450 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -67.60950 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 461 NE2 HIS A 461 CD2 -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 96 166.71 177.75 REMARK 500 HIS A 104 151.80 -25.23 REMARK 500 ALA A 163 -75.54 -138.98 REMARK 500 THR A 197 148.00 -177.57 REMARK 500 LEU A 327 -102.22 -133.47 REMARK 500 HIS A 329 -41.36 76.57 REMARK 500 HIS A 461 35.80 76.07 REMARK 500 ASP A 493 -164.73 -164.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PXM A 609 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T37 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PYRIDOXINE 4-OXIDASE FROM MESORHIZOBIUM LOTI DBREF 4HA6 A 17 520 UNP Q5NT46 Q5NT46_RHILI 17 520 SEQADV 4HA6 HIS A 521 UNP Q5NT46 EXPRESSION TAG SEQADV 4HA6 HIS A 522 UNP Q5NT46 EXPRESSION TAG SEQADV 4HA6 HIS A 523 UNP Q5NT46 EXPRESSION TAG SEQADV 4HA6 HIS A 524 UNP Q5NT46 EXPRESSION TAG SEQRES 1 A 508 ASN CYS ASP ILE VAL ILE VAL GLY GLY GLY SER ALA GLY SEQRES 2 A 508 SER LEU LEU ALA ALA ARG LEU SER GLU ASP PRO ASP SER SEQRES 3 A 508 ARG VAL LEU LEU ILE GLU ALA GLY GLU GLU PRO THR ASP SEQRES 4 A 508 PRO ASP ILE TRP ASN PRO ALA ALA TRP PRO ALA LEU GLN SEQRES 5 A 508 GLY ARG SER TYR ASP TRP ASP TYR ARG THR GLU ALA GLN SEQRES 6 A 508 ALA GLY THR ALA GLY ARG ALA HIS HIS TRP ALA ARG GLY SEQRES 7 A 508 ARG LEU ILE GLY GLY SER SER CME LEU HIS ALA MET GLY SEQRES 8 A 508 TYR MET ARG GLY HIS PRO SER ASP PHE GLN ALA TRP VAL SEQRES 9 A 508 ASP ALA SER GLY ASP ARG ARG TRP GLY TRP ASP GLU LEU SEQRES 10 A 508 LEU PRO VAL PHE GLN ALA ILE GLU ASP HIS PRO LEU GLY SEQRES 11 A 508 GLY ASP GLY ILE HIS GLY LYS GLY GLY PRO LEU PRO ILE SEQRES 12 A 508 HIS LEU PRO ALA ASP GLU VAL SER PRO LEU ALA ARG ALA SEQRES 13 A 508 PHE ILE GLU ALA GLY ALA SER LEU GLY LEU PRO ARG LEU SEQRES 14 A 508 GLU GLY HIS ASN SER GLY GLU MET ILE GLY VAL THR PRO SEQRES 15 A 508 ASN SER LEU ASN ILE ARG ASP GLY ARG ARG VAL THR ALA SEQRES 16 A 508 ALA ASP ALA TRP LEU THR LYS ALA VAL ARG GLY ARG LYS SEQRES 17 A 508 ASN LEU THR ILE LEU THR GLY SER ARG VAL ARG ARG LEU SEQRES 18 A 508 LYS LEU GLU GLY ASN GLN VAL ARG SER LEU GLU VAL VAL SEQRES 19 A 508 GLY ARG GLN GLY SER ALA GLU VAL PHE ALA ASP GLN ILE SEQRES 20 A 508 VAL LEU CYS ALA GLY ALA LEU GLU SER PRO ALA LEU LEU SEQRES 21 A 508 MET ARG SER GLY ILE GLY PRO HIS ASP VAL LEU ASP ALA SEQRES 22 A 508 ALA GLY VAL GLY CME LEU ILE ASP MET PRO ASP ILE GLY SEQRES 23 A 508 ARG ASN LEU GLN ASP HIS LEU LEU GLY ALA GLY ASN LEU SEQRES 24 A 508 TYR ALA ALA ARG LYS PRO VAL PRO PRO SER ARG LEU GLN SEQRES 25 A 508 HIS SER GLU SER MET ALA TYR MET ARG ALA ASP SER PHE SEQRES 26 A 508 THR ALA ALA GLY GLN PRO GLU ILE VAL VAL GLY CYS GLY SEQRES 27 A 508 VAL ALA PRO ILE VAL SER GLU SER PHE PRO ALA PRO ALA SEQRES 28 A 508 ALA GLY SER ALA TYR SER LEU LEU PHE GLY ILE THR HIS SEQRES 29 A 508 PRO THR SER ARG GLY SER VAL ARG ILE SER GLY PRO GLU SEQRES 30 A 508 LEU GLY ASP ARG LEU ILE ILE ASP PRO ALA TYR LEU GLN SEQRES 31 A 508 THR GLY ARG ASP ARG GLU ARG PHE ARG ARG ALA LEU GLU SEQRES 32 A 508 ALA SER ARG THR ILE GLY HIS ARG ASP GLU LEU ALA GLY SEQRES 33 A 508 TRP ARG GLU ARG GLU LEU LEU PRO GLY THR PRO ASN SER SEQRES 34 A 508 ALA ALA GLU MET ASP ASP PHE ILE ALA ARG SER VAL ILE SEQRES 35 A 508 THR HIS HIS HIS PRO CYS GLY THR CYS ARG MET GLY LYS SEQRES 36 A 508 ASP PRO ASP ALA VAL VAL ASP ALA ASN LEU ARG LEU LYS SEQRES 37 A 508 ALA LEU ASP ASN LEU PHE VAL VAL ASP ALA SER ILE MET SEQRES 38 A 508 PRO ASN LEU THR ALA GLY PRO ILE HIS ALA ALA VAL LEU SEQRES 39 A 508 ALA ILE ALA GLU THR PHE ALA ARG GLN TYR HIS HIS HIS SEQRES 40 A 508 HIS MODRES 4HA6 CME A 102 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE MODRES 4HA6 CME A 294 CYS S,S-(2-HYDROXYETHYL)THIOCYSTEINE HET CME A 102 10 HET CME A 294 10 HET FAD A 601 53 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HET GOL A 606 6 HET GOL A 607 6 HET GOL A 608 6 HET PXM A 609 12 HETNAM CME S,S-(2-HYDROXYETHYL)THIOCYSTEINE HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM GOL GLYCEROL HETNAM PXM 4-(AMINOMETHYL)-5-(HYDROXYMETHYL)-2-METHYLPYRIDIN-3-OL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PXM PYRIDOXAMINE FORMUL 1 CME 2(C5 H11 N O3 S2) FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 GOL 7(C3 H8 O3) FORMUL 10 PXM C8 H12 N2 O2 FORMUL 11 HOH *244(H2 O) HELIX 1 1 GLY A 26 SER A 37 1 12 HELIX 2 2 ASP A 55 TRP A 64 5 10 HELIX 3 3 GLN A 81 ALA A 85 5 5 HELIX 4 4 GLY A 98 LEU A 103 5 6 HELIX 5 5 HIS A 112 GLY A 124 1 13 HELIX 6 6 ASP A 125 TRP A 128 5 4 HELIX 7 7 GLY A 129 ILE A 140 1 12 HELIX 8 8 SER A 167 LEU A 180 1 14 HELIX 9 9 THR A 210 LEU A 216 1 7 HELIX 10 10 THR A 217 GLY A 222 1 6 HELIX 11 11 ALA A 267 SER A 279 1 13 HELIX 12 12 PRO A 283 ALA A 290 1 8 HELIX 13 13 THR A 407 HIS A 426 1 20 HELIX 14 14 ARG A 427 ALA A 431 5 5 HELIX 15 15 SER A 445 SER A 456 1 12 HELIX 16 16 ASP A 493 MET A 497 5 5 HELIX 17 17 ILE A 505 HIS A 523 1 19 SHEET 1 A 5 LEU A 226 LEU A 229 0 SHEET 2 A 5 VAL A 44 ILE A 47 1 N LEU A 46 O LEU A 229 SHEET 3 A 5 ILE A 20 VAL A 23 1 N ILE A 22 O LEU A 45 SHEET 4 A 5 GLN A 262 LEU A 265 1 O VAL A 264 N VAL A 21 SHEET 5 A 5 LEU A 489 VAL A 491 1 O PHE A 490 N LEU A 265 SHEET 1 B 2 TYR A 76 ARG A 77 0 SHEET 2 B 2 HIS A 90 TRP A 91 -1 O TRP A 91 N TYR A 76 SHEET 1 C 2 GLU A 141 ASP A 142 0 SHEET 2 C 2 LEU A 157 PRO A 158 1 O LEU A 157 N ASP A 142 SHEET 1 D 2 ILE A 203 ARG A 204 0 SHEET 2 D 2 ARG A 207 ARG A 208 -1 O ARG A 207 N ARG A 204 SHEET 1 E 3 ARG A 233 GLU A 240 0 SHEET 2 E 3 GLN A 243 GLY A 251 -1 O VAL A 250 N ARG A 233 SHEET 3 E 3 GLY A 254 PHE A 259 -1 O ALA A 256 N VAL A 249 SHEET 1 F 2 ILE A 281 GLY A 282 0 SHEET 2 F 2 ILE A 296 ASP A 297 1 O ILE A 296 N GLY A 282 SHEET 1 G 5 ALA A 334 MET A 336 0 SHEET 2 G 5 ILE A 349 GLY A 354 -1 N ILE A 349 O MET A 336 SHEET 3 G 5 ALA A 371 ILE A 378 -1 O LEU A 375 N GLY A 352 SHEET 4 G 5 LEU A 309 ALA A 318 -1 N GLY A 311 O PHE A 376 SHEET 5 G 5 ARG A 434 GLU A 437 -1 O GLU A 435 N ALA A 317 SHEET 1 H 5 ALA A 334 MET A 336 0 SHEET 2 H 5 ILE A 349 GLY A 354 -1 N ILE A 349 O MET A 336 SHEET 3 H 5 ALA A 371 ILE A 378 -1 O LEU A 375 N GLY A 352 SHEET 4 H 5 LEU A 309 ALA A 318 -1 N GLY A 311 O PHE A 376 SHEET 5 H 5 VAL A 457 THR A 459 -1 O ILE A 458 N LEU A 310 SHEET 1 I 2 SER A 386 ARG A 388 0 SHEET 2 I 2 ILE A 399 ASP A 401 -1 O ILE A 399 N ARG A 388 LINK C SER A 101 N CME A 102 1555 1555 1.34 LINK C CME A 102 N LEU A 103 1555 1555 1.34 LINK C GLY A 293 N CME A 294 1555 1555 1.33 LINK C CME A 294 N LEU A 295 1555 1555 1.32 CISPEP 1 ALA A 312 GLY A 313 0 -0.06 CISPEP 2 LEU A 439 PRO A 440 0 4.10 SITE 1 AC1 41 GLY A 24 GLY A 26 SER A 27 ALA A 28 SITE 2 AC1 41 ILE A 47 GLU A 48 ALA A 49 TRP A 74 SITE 3 AC1 41 ALA A 92 ARG A 93 GLY A 94 ARG A 95 SITE 4 AC1 41 LEU A 96 GLY A 99 SER A 100 LEU A 103 SITE 5 AC1 41 HIS A 104 ALA A 105 MET A 106 GLY A 107 SITE 6 AC1 41 SER A 232 ARG A 233 VAL A 234 CYS A 266 SITE 7 AC1 41 ALA A 267 GLY A 268 GLU A 271 ARG A 278 SITE 8 AC1 41 HIS A 461 ASP A 493 ALA A 494 PRO A 504 SITE 9 AC1 41 ILE A 505 HIS A 506 PXM A 609 HOH A 712 SITE 10 AC1 41 HOH A 715 HOH A 734 HOH A 754 HOH A 849 SITE 11 AC1 41 HOH A 850 SITE 1 AC2 6 HIS A 160 ILE A 203 ARG A 204 ASP A 205 SITE 2 AC2 6 GLY A 206 HOH A 803 SITE 1 AC3 8 TYR A 76 GLU A 271 ALA A 274 ARG A 278 SITE 2 AC3 8 LEU A 394 ASP A 396 LEU A 398 HOH A 847 SITE 1 AC4 8 PRO A 283 ASP A 285 VAL A 286 PRO A 299 SITE 2 AC4 8 ARG A 303 ARG A 388 HOH A 793 HOH A 868 SITE 1 AC5 9 MET A 336 ARG A 337 ALA A 338 SER A 340 SITE 2 AC5 9 PHE A 341 ARG A 416 ALA A 420 HOH A 792 SITE 3 AC5 9 HOH A 851 SITE 1 AC6 5 THR A 382 ARG A 384 GLN A 406 THR A 407 SITE 2 AC6 5 HOH A 885 SITE 1 AC7 3 HIS A 426 ARG A 427 ASP A 428 SITE 1 AC8 3 ARG A 184 GLU A 192 ARG A 245 SITE 1 AC9 6 ALA A 105 SER A 330 HIS A 460 HIS A 461 SITE 2 AC9 6 HIS A 462 FAD A 601 CRYST1 62.489 79.169 135.219 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016003 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007395 0.00000