HEADER TRANSFERASE 27-SEP-12 4HAO TITLE CRYSTAL STRUCTURE OF INORGANIC POLYPHOSPHATE/ATP-NAD KINASE FROM TITLE 2 YERSINIA PESTIS CO92 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE INORGANIC POLYPHOSPHATE/ATP-NAD KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLY(P)/ATP NAD KINASE; COMPND 5 EC: 2.7.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 214092; SOURCE 4 STRAIN: CO92; SOURCE 5 GENE: PPNK, Y3074, YPO1106, YP_1050; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG26 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, BETA-FOLD, SBP FOLD, KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,R.JEDRZEJCZAK,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 20-SEP-23 4HAO 1 REMARK SEQADV REVDAT 1 10-OCT-12 4HAO 0 JRNL AUTH Y.KIM,N.MALTSEVA,R.JEDRZEJCZAK,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF INORGANIC POLYPHOSPHATE/ATP-NAD KINASE JRNL TITL 2 FROM YERSINIA PESTIS CO92 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1032) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 20378 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.7495 - 4.8760 0.96 2760 171 0.1717 0.2040 REMARK 3 2 4.8760 - 3.8720 1.00 2783 164 0.1569 0.2333 REMARK 3 3 3.8720 - 3.3831 1.00 2792 152 0.1948 0.2673 REMARK 3 4 3.3831 - 3.0740 1.00 2788 134 0.2059 0.2838 REMARK 3 5 3.0740 - 2.8538 1.00 2791 140 0.2379 0.2849 REMARK 3 6 2.8538 - 2.6856 1.00 2797 151 0.2436 0.3276 REMARK 3 7 2.6856 - 2.5512 0.95 2621 134 0.2711 0.3396 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 72.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4586 REMARK 3 ANGLE : 1.122 6226 REMARK 3 CHIRALITY : 0.076 722 REMARK 3 PLANARITY : 0.005 807 REMARK 3 DIHEDRAL : 15.287 1647 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4:123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4343 -4.4395 17.2215 REMARK 3 T TENSOR REMARK 3 T11: 0.3543 T22: 0.4095 REMARK 3 T33: 0.6119 T12: 0.1312 REMARK 3 T13: 0.0123 T23: 0.1368 REMARK 3 L TENSOR REMARK 3 L11: 5.8104 L22: 1.4243 REMARK 3 L33: 8.2100 L12: 2.0518 REMARK 3 L13: 0.8899 L23: 0.9226 REMARK 3 S TENSOR REMARK 3 S11: -0.0481 S12: -0.3918 S13: -0.5123 REMARK 3 S21: 0.1146 S22: -0.0021 S23: 0.2496 REMARK 3 S31: 0.0237 S32: 0.1032 S33: 0.0695 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124:239 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3916 6.5043 -8.8070 REMARK 3 T TENSOR REMARK 3 T11: 0.2196 T22: 0.3868 REMARK 3 T33: 0.4780 T12: -0.0784 REMARK 3 T13: 0.0246 T23: -0.1697 REMARK 3 L TENSOR REMARK 3 L11: 5.2789 L22: 3.7005 REMARK 3 L33: 5.3034 L12: -0.8424 REMARK 3 L13: 0.3933 L23: -0.9833 REMARK 3 S TENSOR REMARK 3 S11: -0.1377 S12: 0.5754 S13: -0.3487 REMARK 3 S21: -0.3432 S22: 0.1314 S23: -0.5574 REMARK 3 S31: 0.1165 S32: 0.3540 S33: 0.0095 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240:292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7667 2.7264 3.5044 REMARK 3 T TENSOR REMARK 3 T11: 0.3140 T22: 0.3509 REMARK 3 T33: 0.6094 T12: -0.0269 REMARK 3 T13: -0.0348 T23: -0.0878 REMARK 3 L TENSOR REMARK 3 L11: 3.7091 L22: 1.4885 REMARK 3 L33: 5.0741 L12: -0.1412 REMARK 3 L13: -1.4060 L23: -1.3029 REMARK 3 S TENSOR REMARK 3 S11: -0.1622 S12: -0.1251 S13: -0.7984 REMARK 3 S21: -0.0510 S22: -0.0211 S23: -0.2456 REMARK 3 S31: -0.0173 S32: 0.5053 S33: 0.2281 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 4:56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.8448 -21.2811 -36.3802 REMARK 3 T TENSOR REMARK 3 T11: 0.6885 T22: 0.8631 REMARK 3 T33: 0.4251 T12: -0.0659 REMARK 3 T13: 0.0418 T23: 0.2024 REMARK 3 L TENSOR REMARK 3 L11: 6.2406 L22: 4.0438 REMARK 3 L33: 5.6803 L12: 1.0769 REMARK 3 L13: -0.3613 L23: 3.4543 REMARK 3 S TENSOR REMARK 3 S11: 0.4389 S12: 1.1331 S13: 0.4994 REMARK 3 S21: -0.5049 S22: -0.0196 S23: -0.4528 REMARK 3 S31: -0.5153 S32: 0.7310 S33: -0.4315 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57:168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5826 -25.7661 -16.0483 REMARK 3 T TENSOR REMARK 3 T11: 0.4672 T22: 0.4435 REMARK 3 T33: 0.3861 T12: -0.0693 REMARK 3 T13: 0.1774 T23: -0.0406 REMARK 3 L TENSOR REMARK 3 L11: 3.9725 L22: 3.1051 REMARK 3 L33: 8.0770 L12: -1.4461 REMARK 3 L13: 2.5545 L23: -3.1768 REMARK 3 S TENSOR REMARK 3 S11: 0.1661 S12: 0.2069 S13: 0.2782 REMARK 3 S21: -0.2647 S22: 0.2882 S23: 0.0251 REMARK 3 S31: -0.4031 S32: -0.2939 S33: -0.4321 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 169:292 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2012 -32.2186 -4.4367 REMARK 3 T TENSOR REMARK 3 T11: 0.3333 T22: 0.3064 REMARK 3 T33: 0.2637 T12: -0.0842 REMARK 3 T13: 0.0550 T23: -0.0965 REMARK 3 L TENSOR REMARK 3 L11: 3.9779 L22: 2.7904 REMARK 3 L33: 2.8320 L12: -0.4398 REMARK 3 L13: -0.4495 L23: -0.6637 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.0543 S13: 0.3456 REMARK 3 S21: 0.0299 S22: 0.1085 S23: -0.2399 REMARK 3 S31: -0.2920 S32: 0.3673 S33: -0.1115 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97931 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 16.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.67700 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: PDBID 2AN1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 4.6, 1 M MAGNESIUM SULPHATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 69.04550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.58000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 69.04550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.58000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -167.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 65.16000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 1.000000 0.000000 65.16000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 527 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ASN A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ARG A 15 REMARK 465 ARG A 135 REMARK 465 THR A 136 REMARK 465 ASN A 137 REMARK 465 GLN A 138 REMARK 465 GLN A 139 REMARK 465 GLU A 293 REMARK 465 ASN A 294 REMARK 465 LEU A 295 REMARK 465 TYR A 296 REMARK 465 PHE A 297 REMARK 465 HIS A 298 REMARK 465 HIS A 299 REMARK 465 HIS A 300 REMARK 465 HIS A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 MET B 0 REMARK 465 ASN B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 ARG B 135 REMARK 465 THR B 136 REMARK 465 ASN B 137 REMARK 465 GLN B 138 REMARK 465 GLN B 139 REMARK 465 GLU B 293 REMARK 465 ASN B 294 REMARK 465 LEU B 295 REMARK 465 TYR B 296 REMARK 465 PHE B 297 REMARK 465 HIS B 298 REMARK 465 HIS B 299 REMARK 465 HIS B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 94 -169.20 -79.11 REMARK 500 ASN A 108 19.82 -141.58 REMARK 500 ASN A 147 -63.98 -93.37 REMARK 500 ALA A 157 52.86 -96.53 REMARK 500 SER A 176 -169.70 -172.53 REMARK 500 ALA A 189 -127.86 -102.36 REMARK 500 ASN B 48 28.83 45.47 REMARK 500 PRO B 106 -14.90 -47.19 REMARK 500 ALA B 171 -65.61 -94.99 REMARK 500 ALA B 189 -117.46 -117.22 REMARK 500 SER B 234 -85.45 -99.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP90526 RELATED DB: TARGETTRACK DBREF 4HAO A 0 292 UNP Q8ZH09 PPNK_YERPE 1 293 DBREF 4HAO B 0 292 UNP Q8ZH09 PPNK_YERPE 1 293 SEQADV 4HAO GLU A 293 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO ASN A 294 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO LEU A 295 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO TYR A 296 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO PHE A 297 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 298 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 299 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 300 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 301 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 302 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS A 303 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO GLU B 293 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO ASN B 294 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO LEU B 295 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO TYR B 296 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO PHE B 297 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 298 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 299 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 300 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 301 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 302 UNP Q8ZH09 EXPRESSION TAG SEQADV 4HAO HIS B 303 UNP Q8ZH09 EXPRESSION TAG SEQRES 1 A 304 MET ASN ASN ARG ARG PHE ASP CYS ILE GLY ILE VAL GLY SEQRES 2 A 304 HIS PRO ARG HIS PRO ALA ALA LEU ALA THR HIS GLU ILE SEQRES 3 A 304 LEU TYR HIS TRP LEU LYS ALA ARG GLY TYR ALA VAL MET SEQRES 4 A 304 VAL GLU GLN GLN ILE ALA HIS ASP LEU ASN LEU THR ASP SEQRES 5 A 304 ALA ILE THR GLY SER LEU ALA ASP ILE GLY GLN LYS ALA SEQRES 6 A 304 ASP LEU ALA VAL VAL VAL GLY GLY ASP GLY ASN MET LEU SEQRES 7 A 304 GLY ALA ALA ARG VAL LEU ALA ARG TYR ASP ILE LYS VAL SEQRES 8 A 304 ILE GLY VAL ASN ARG GLY ASN LEU GLY PHE LEU THR ASP SEQRES 9 A 304 LEU ASP PRO ASP ASN ALA LEU GLN GLN LEU SER ASP VAL SEQRES 10 A 304 LEU GLU GLY GLU TYR LEU SER GLU GLN ARG PHE LEU LEU SEQRES 11 A 304 GLU THR HIS VAL ARG ARG THR ASN GLN GLN SER ARG ILE SEQRES 12 A 304 SER THR ALA ILE ASN GLU VAL VAL LEU HIS PRO GLY LYS SEQRES 13 A 304 VAL ALA HIS MET ILE GLU PHE GLU VAL TYR ILE ASP ASP SEQRES 14 A 304 ARG PHE ALA PHE SER GLN ARG SER ASP GLY LEU ILE ILE SEQRES 15 A 304 ALA THR PRO THR GLY SER THR ALA TYR SER LEU SER ALA SEQRES 16 A 304 GLY GLY PRO ILE LEU THR PRO THR LEU ASP ALA ILE VAL SEQRES 17 A 304 LEU VAL PRO MET PHE PRO HIS THR LEU THR ALA ARG PRO SEQRES 18 A 304 LEU VAL ILE SER SER SER SER THR ILE ARG LEU LYS PHE SEQRES 19 A 304 SER HIS ILE THR SER ASP LEU GLU ILE SER CYS ASP SER SEQRES 20 A 304 GLN ILE ALA LEU PRO ILE GLN GLU GLY GLU GLU VAL LEU SEQRES 21 A 304 ILE ARG ARG SER ASP PHE HIS LEU ASN LEU ILE HIS PRO SEQRES 22 A 304 LYS ASP TYR SER TYR PHE ASN THR LEU SER THR LYS LEU SEQRES 23 A 304 GLY TRP SER LYS LYS LEU PHE GLU ASN LEU TYR PHE HIS SEQRES 24 A 304 HIS HIS HIS HIS HIS SEQRES 1 B 304 MET ASN ASN ARG ARG PHE ASP CYS ILE GLY ILE VAL GLY SEQRES 2 B 304 HIS PRO ARG HIS PRO ALA ALA LEU ALA THR HIS GLU ILE SEQRES 3 B 304 LEU TYR HIS TRP LEU LYS ALA ARG GLY TYR ALA VAL MET SEQRES 4 B 304 VAL GLU GLN GLN ILE ALA HIS ASP LEU ASN LEU THR ASP SEQRES 5 B 304 ALA ILE THR GLY SER LEU ALA ASP ILE GLY GLN LYS ALA SEQRES 6 B 304 ASP LEU ALA VAL VAL VAL GLY GLY ASP GLY ASN MET LEU SEQRES 7 B 304 GLY ALA ALA ARG VAL LEU ALA ARG TYR ASP ILE LYS VAL SEQRES 8 B 304 ILE GLY VAL ASN ARG GLY ASN LEU GLY PHE LEU THR ASP SEQRES 9 B 304 LEU ASP PRO ASP ASN ALA LEU GLN GLN LEU SER ASP VAL SEQRES 10 B 304 LEU GLU GLY GLU TYR LEU SER GLU GLN ARG PHE LEU LEU SEQRES 11 B 304 GLU THR HIS VAL ARG ARG THR ASN GLN GLN SER ARG ILE SEQRES 12 B 304 SER THR ALA ILE ASN GLU VAL VAL LEU HIS PRO GLY LYS SEQRES 13 B 304 VAL ALA HIS MET ILE GLU PHE GLU VAL TYR ILE ASP ASP SEQRES 14 B 304 ARG PHE ALA PHE SER GLN ARG SER ASP GLY LEU ILE ILE SEQRES 15 B 304 ALA THR PRO THR GLY SER THR ALA TYR SER LEU SER ALA SEQRES 16 B 304 GLY GLY PRO ILE LEU THR PRO THR LEU ASP ALA ILE VAL SEQRES 17 B 304 LEU VAL PRO MET PHE PRO HIS THR LEU THR ALA ARG PRO SEQRES 18 B 304 LEU VAL ILE SER SER SER SER THR ILE ARG LEU LYS PHE SEQRES 19 B 304 SER HIS ILE THR SER ASP LEU GLU ILE SER CYS ASP SER SEQRES 20 B 304 GLN ILE ALA LEU PRO ILE GLN GLU GLY GLU GLU VAL LEU SEQRES 21 B 304 ILE ARG ARG SER ASP PHE HIS LEU ASN LEU ILE HIS PRO SEQRES 22 B 304 LYS ASP TYR SER TYR PHE ASN THR LEU SER THR LYS LEU SEQRES 23 B 304 GLY TRP SER LYS LYS LEU PHE GLU ASN LEU TYR PHE HIS SEQRES 24 B 304 HIS HIS HIS HIS HIS HET ACY A 401 8 HET ACY A 402 4 HET ACY A 403 4 HET SO4 A 404 5 HET ACY B 401 4 HET ACY B 402 4 HET ACY B 403 4 HET ACY B 404 4 HET ACY B 405 4 HET ACY B 406 4 HET ACY B 407 4 HET SO4 B 408 5 HET ACY B 409 4 HETNAM ACY ACETIC ACID HETNAM SO4 SULFATE ION FORMUL 3 ACY 11(C2 H4 O2) FORMUL 6 SO4 2(O4 S 2-) FORMUL 16 HOH *48(H2 O) HELIX 1 1 ALA A 19 ARG A 33 1 15 HELIX 2 2 GLN A 41 ASN A 48 1 8 HELIX 3 3 SER A 56 ALA A 64 1 9 HELIX 4 4 GLY A 72 ALA A 84 1 13 HELIX 5 5 ASP A 105 ASP A 107 5 3 HELIX 6 6 ASN A 108 GLY A 119 1 12 HELIX 7 7 PRO A 184 THR A 188 5 5 HELIX 8 8 ALA A 189 ALA A 194 1 6 HELIX 9 9 SER A 276 GLY A 286 1 11 HELIX 10 10 HIS B 16 ARG B 33 1 18 HELIX 11 11 GLN B 41 LEU B 47 1 7 HELIX 12 12 SER B 56 ALA B 64 1 9 HELIX 13 13 GLY B 72 ALA B 84 1 13 HELIX 14 14 ASN B 108 LEU B 117 1 10 HELIX 15 15 PRO B 184 THR B 188 5 5 HELIX 16 16 ALA B 189 ALA B 194 1 6 HELIX 17 17 SER B 276 GLY B 286 1 11 SHEET 1 A 8 ILE A 53 GLY A 55 0 SHEET 2 A 8 ALA A 36 GLU A 40 1 N VAL A 39 O ILE A 53 SHEET 3 A 8 CYS A 7 VAL A 11 1 N ILE A 10 O MET A 38 SHEET 4 A 8 LEU A 66 VAL A 70 1 O VAL A 68 N GLY A 9 SHEET 5 A 8 LYS A 89 VAL A 93 1 O LYS A 89 N ALA A 67 SHEET 6 A 8 GLU A 257 PRO A 272 1 O ASN A 268 N VAL A 90 SHEET 7 A 8 TYR A 121 ARG A 134 -1 N GLU A 130 O ARG A 261 SHEET 8 A 8 ARG A 141 ALA A 145 -1 O ALA A 145 N LEU A 129 SHEET 1 B 9 ILE A 53 GLY A 55 0 SHEET 2 B 9 ALA A 36 GLU A 40 1 N VAL A 39 O ILE A 53 SHEET 3 B 9 CYS A 7 VAL A 11 1 N ILE A 10 O MET A 38 SHEET 4 B 9 LEU A 66 VAL A 70 1 O VAL A 68 N GLY A 9 SHEET 5 B 9 LYS A 89 VAL A 93 1 O LYS A 89 N ALA A 67 SHEET 6 B 9 GLU A 257 PRO A 272 1 O ASN A 268 N VAL A 90 SHEET 7 B 9 ILE A 229 PHE A 233 -1 N LEU A 231 O VAL A 258 SHEET 8 B 9 ILE A 160 ILE A 166 -1 N TYR A 165 O ARG A 230 SHEET 9 B 9 ARG A 169 SER A 176 -1 O SER A 176 N ILE A 160 SHEET 1 C 6 LEU A 221 SER A 224 0 SHEET 2 C 6 ALA A 205 MET A 211 -1 N ILE A 206 O ILE A 223 SHEET 3 C 6 GLY A 178 ALA A 182 -1 N ILE A 180 O VAL A 209 SHEET 4 C 6 GLU A 148 PRO A 153 -1 N VAL A 149 O ILE A 181 SHEET 5 C 6 LEU A 240 CYS A 244 -1 O SER A 243 N VAL A 150 SHEET 6 C 6 LEU A 250 ILE A 252 -1 O ILE A 252 N LEU A 240 SHEET 1 D 5 ILE B 53 GLY B 55 0 SHEET 2 D 5 ALA B 36 GLU B 40 1 N VAL B 39 O GLY B 55 SHEET 3 D 5 CYS B 7 VAL B 11 1 N ILE B 10 O MET B 38 SHEET 4 D 5 LEU B 66 VAL B 70 1 O VAL B 68 N GLY B 9 SHEET 5 D 5 LYS B 89 VAL B 93 1 O LYS B 89 N ALA B 67 SHEET 1 E 6 ILE B 142 ALA B 145 0 SHEET 2 E 6 ARG B 126 VAL B 133 -1 N LEU B 129 O ALA B 145 SHEET 3 E 6 VAL B 258 LEU B 267 -1 O SER B 263 N LEU B 128 SHEET 4 E 6 ILE B 229 PHE B 233 -1 N ILE B 229 O ILE B 260 SHEET 5 E 6 ILE B 160 ILE B 166 -1 N GLU B 163 O LYS B 232 SHEET 6 E 6 ARG B 169 SER B 176 -1 O SER B 176 N ILE B 160 SHEET 1 F 6 LEU B 221 SER B 224 0 SHEET 2 F 6 ALA B 205 PRO B 210 -1 N ILE B 206 O ILE B 223 SHEET 3 F 6 LEU B 179 ALA B 182 -1 N ILE B 180 O VAL B 209 SHEET 4 F 6 GLU B 148 PRO B 153 -1 N VAL B 149 O ILE B 181 SHEET 5 F 6 LEU B 240 CYS B 244 -1 O SER B 243 N VAL B 150 SHEET 6 F 6 LEU B 250 ILE B 252 -1 O ILE B 252 N LEU B 240 SITE 1 AC1 7 PHE A 172 GLN A 174 PRO A 210 ALA A 218 SITE 2 AC1 7 ARG A 219 LEU A 221 TRP A 287 SITE 1 AC2 3 PRO A 106 ALA B 21 GLU B 24 SITE 1 AC3 5 GLU A 40 GLN A 42 SER A 56 LEU A 57 SITE 2 AC3 5 GLN B 253 SITE 1 AC4 4 ARG A 175 HIS A 214 THR A 215 SER A 288 SITE 1 AC5 3 GLN B 174 ARG B 219 TRP B 287 SITE 1 AC6 4 ARG B 85 ARG B 141 THR B 144 HOH B 519 SITE 1 AC7 3 GLU B 40 GLN B 42 LEU B 57 SITE 1 AC8 2 ALA B 218 HOH B 525 SITE 1 AC9 2 PHE A 212 PHE B 212 SITE 1 BC1 3 GLY B 61 GLN B 62 ASP B 87 SITE 1 BC2 4 ASN B 147 GLU B 148 ALA B 189 SER B 246 SITE 1 BC3 4 ARG B 175 HIS B 214 THR B 215 SER B 288 SITE 1 BC4 2 PHE B 170 LYS B 290 CRYST1 138.091 65.160 86.386 90.00 124.95 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007242 0.000000 0.005062 0.00000 SCALE2 0.000000 0.015347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014124 0.00000