HEADER IMMUNE SYSTEM 27-SEP-12 4HBC TITLE CRYSTAL STRUCTURE OF A CONFORMATION-DEPENDENT RABBIT IGG FAB SPECIFIC TITLE 2 FOR AMYLOID PREFIBRILLAR OLIGOMERS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIGEN BINDING FRAGMENT, IMMUNOGLOBULIN IGG - HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIGEN BINDING FRAGMENT, IMMUNOGLOBULIN IGG - LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 3 ORGANISM_COMMON: RABBIT; SOURCE 4 ORGANISM_TAXID: 9986; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK 293; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 11 ORGANISM_COMMON: RABBIT; SOURCE 12 ORGANISM_TAXID: 9986; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: HEK 293 KEYWDS FAB, RABBIT, CONFORMATION-SPECIFIC, AMYLOID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.ARAI REVDAT 2 06-NOV-24 4HBC 1 REMARK REVDAT 1 31-OCT-12 4HBC 0 SPRSDE 31-OCT-12 4HBC 3NL4 JRNL AUTH H.ARAI,C.GLABE,H.LUECKE JRNL TITL CRYSTAL STRUCTURE OF A CONFORMATION-DEPENDENT RABBIT IGG FAB JRNL TITL 2 SPECIFIC FOR AMYLOID PREFIBRILLAR OLIGOMERS. JRNL REF BIOCHIM.BIOPHYS.ACTA V.1820 1908 2012 JRNL REFN ISSN 0006-3002 JRNL PMID 22940003 JRNL DOI 10.1016/J.BBAGEN.2012.08.016 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.4 REMARK 3 NUMBER OF REFLECTIONS : 56401 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2857 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.54 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.58 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2057 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 46.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.4120 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 434 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : 2.11000 REMARK 3 B33 (A**2) : -1.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.081 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.080 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3314 ; 0.012 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4568 ; 1.507 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 446 ; 6.666 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;37.487 ;24.554 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 505 ;12.169 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;11.081 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 550 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2469 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3314 ; 2.655 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 125 ;28.311 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3529 ;10.391 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 121 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3475 20.5667 -8.0890 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.0469 REMARK 3 T33: 0.0926 T12: -0.0073 REMARK 3 T13: 0.0040 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.4047 L22: 1.0975 REMARK 3 L33: 0.9615 L12: -0.8476 REMARK 3 L13: 0.1337 L23: 0.2786 REMARK 3 S TENSOR REMARK 3 S11: 0.1294 S12: 0.0867 S13: 0.1023 REMARK 3 S21: -0.0433 S22: -0.1629 S23: -0.0584 REMARK 3 S31: -0.0192 S32: 0.0630 S33: 0.0335 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 122 H 144 REMARK 3 ORIGIN FOR THE GROUP (A): -49.5479 29.3668 -15.1278 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.0924 REMARK 3 T33: 0.0997 T12: 0.0666 REMARK 3 T13: 0.0200 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 4.4185 L22: 0.8657 REMARK 3 L33: 4.9775 L12: -1.0622 REMARK 3 L13: 1.8503 L23: 1.1012 REMARK 3 S TENSOR REMARK 3 S11: 0.1759 S12: -0.0855 S13: -0.1568 REMARK 3 S21: -0.0266 S22: 0.0117 S23: 0.0220 REMARK 3 S31: -0.0363 S32: -0.2113 S33: -0.1876 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 145 H 192 REMARK 3 ORIGIN FOR THE GROUP (A): -37.1654 26.5134 -12.4052 REMARK 3 T TENSOR REMARK 3 T11: 0.0579 T22: 0.1094 REMARK 3 T33: 0.0697 T12: 0.0605 REMARK 3 T13: -0.0294 T23: -0.0533 REMARK 3 L TENSOR REMARK 3 L11: 2.8789 L22: 1.8378 REMARK 3 L33: 3.7068 L12: 0.5272 REMARK 3 L13: -0.7189 L23: 0.6901 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 0.0497 S13: -0.0363 REMARK 3 S21: 0.0452 S22: 0.3069 S23: -0.0496 REMARK 3 S31: 0.2863 S32: 0.3587 S33: -0.2826 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 193 H 215 REMARK 3 ORIGIN FOR THE GROUP (A): -42.0388 28.9869 -4.7193 REMARK 3 T TENSOR REMARK 3 T11: 0.1008 T22: 0.1539 REMARK 3 T33: 0.1276 T12: 0.0251 REMARK 3 T13: -0.0278 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.1227 L22: 1.0623 REMARK 3 L33: 3.7028 L12: 0.6018 REMARK 3 L13: -1.3327 L23: 0.7467 REMARK 3 S TENSOR REMARK 3 S11: 0.0842 S12: -0.2825 S13: -0.0662 REMARK 3 S21: 0.1160 S22: 0.0506 S23: -0.1808 REMARK 3 S31: 0.1119 S32: 0.3563 S33: -0.1348 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 24 REMARK 3 ORIGIN FOR THE GROUP (A): -15.2443 14.9092 -33.5508 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.3060 REMARK 3 T33: 0.0404 T12: 0.1315 REMARK 3 T13: -0.0436 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 5.4510 L22: 1.3721 REMARK 3 L33: 0.6767 L12: 0.9309 REMARK 3 L13: 0.5785 L23: -0.1895 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.6651 S13: -0.0635 REMARK 3 S21: -0.2896 S22: -0.1918 S23: -0.0094 REMARK 3 S31: 0.0071 S32: 0.2836 S33: 0.0872 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 25 L 57 REMARK 3 ORIGIN FOR THE GROUP (A): -12.8706 8.8888 -22.6877 REMARK 3 T TENSOR REMARK 3 T11: 0.1013 T22: 0.1068 REMARK 3 T33: 0.0534 T12: 0.0805 REMARK 3 T13: -0.0436 T23: -0.0480 REMARK 3 L TENSOR REMARK 3 L11: 1.5688 L22: 0.9417 REMARK 3 L33: 2.6030 L12: 0.0529 REMARK 3 L13: -0.1493 L23: -0.1235 REMARK 3 S TENSOR REMARK 3 S11: 0.2215 S12: 0.2525 S13: -0.1476 REMARK 3 S21: -0.0995 S22: -0.2023 S23: 0.0757 REMARK 3 S31: 0.2405 S32: -0.0073 S33: -0.0191 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 58 L 143 REMARK 3 ORIGIN FOR THE GROUP (A): -25.9951 18.2749 -26.0821 REMARK 3 T TENSOR REMARK 3 T11: 0.0792 T22: 0.1058 REMARK 3 T33: 0.0520 T12: 0.0585 REMARK 3 T13: -0.0221 T23: -0.0610 REMARK 3 L TENSOR REMARK 3 L11: 1.1841 L22: 0.4287 REMARK 3 L33: 0.4671 L12: -0.5200 REMARK 3 L13: 0.1367 L23: -0.3498 REMARK 3 S TENSOR REMARK 3 S11: 0.1566 S12: 0.2322 S13: -0.0657 REMARK 3 S21: -0.0748 S22: -0.1383 S23: 0.0271 REMARK 3 S31: 0.0694 S32: 0.1058 S33: -0.0183 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 144 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): -43.3486 34.3737 -27.6887 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.0851 REMARK 3 T33: 0.0556 T12: -0.0193 REMARK 3 T13: 0.0440 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.9167 L22: 0.8562 REMARK 3 L33: 2.8864 L12: -0.2595 REMARK 3 L13: -0.5511 L23: 1.1961 REMARK 3 S TENSOR REMARK 3 S11: 0.0808 S12: 0.1263 S13: 0.1156 REMARK 3 S21: -0.1401 S22: 0.1764 S23: -0.0811 REMARK 3 S31: -0.4324 S32: 0.2173 S33: -0.2572 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-12. REMARK 100 THE DEPOSITION ID IS D_1000075253. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979462 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK 9.7L REMARK 200 DATA SCALING SOFTWARE : D*TREK 9.7L REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56536 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 31.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.6 REMARK 200 DATA REDUNDANCY : 6.460 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 49.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.67 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.1 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MAGNESIUM SULFATE 20 % PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.46700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.09200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.46700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.09200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 503 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 511 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 135 REMARK 465 SER H 136 REMARK 465 SER H 189 REMARK 465 SER H 190 REMARK 465 GLN H 191 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER H 2 O HOH H 499 2.03 REMARK 500 N PRO H 192 O HOH H 516 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP H 35 CE2 TRP H 35 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR H 71 -168.17 -121.57 REMARK 500 CYS H 130 119.58 -30.79 REMARK 500 SER L 30 -120.86 58.93 REMARK 500 THR L 51 -47.49 76.17 REMARK 500 SER L 67 159.55 179.88 REMARK 500 PRO L 143 -158.70 -81.77 REMARK 500 CYS L 172 -1.89 74.44 REMARK 500 LYS L 191 -72.44 -107.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 301 DBREF 4HBC H 1 215 PDB 4HBC 4HBC 1 215 DBREF 4HBC L 1 213 PDB 4HBC 4HBC 1 213 SEQRES 1 H 215 GLN SER VAL GLU GLU SER GLY GLY ARG LEU VAL THR PRO SEQRES 2 H 215 GLY THR PRO LEU THR LEU ALA CYS THR VAL SER GLY PHE SEQRES 3 H 215 SER LEU ASN THR TYR SER MET PHE TRP VAL ARG GLN ALA SEQRES 4 H 215 PRO GLY LYS GLY LEU GLN TRP ILE GLY ILE ILE SER ASN SEQRES 5 H 215 PHE GLY VAL ILE TYR TYR ALA THR TRP ALA LYS GLY ARG SEQRES 6 H 215 PHE THR ILE SER LYS THR SER THR THR VAL ASP LEU LYS SEQRES 7 H 215 ILE THR SER PRO THR THR GLU ASP THR ALA THR TYR PHE SEQRES 8 H 215 CYS VAL ARG LYS TYR GLY SER GLU TRP GLY GLY ASP LEU SEQRES 9 H 215 TRP GLY PRO GLY THR LEU VAL THR VAL SER SER GLY GLN SEQRES 10 H 215 PRO LYS ALA PRO SER VAL PHE PRO LEU ALA PRO CYS CYS SEQRES 11 H 215 GLY ASP THR PRO SER SER THR VAL THR LEU GLY CYS LEU SEQRES 12 H 215 VAL LYS GLY TYR LEU PRO GLU PRO VAL THR VAL THR TRP SEQRES 13 H 215 ASN SER GLY THR LEU THR ASN GLY VAL ARG THR PHE PRO SEQRES 14 H 215 SER VAL ARG GLN SER SER GLY LEU TYR SER LEU SER SER SEQRES 15 H 215 VAL VAL SER VAL THR SER SER SER GLN PRO VAL THR CYS SEQRES 16 H 215 ASN VAL ALA HIS PRO ALA THR ASN THR LYS VAL ASP LYS SEQRES 17 H 215 THR VAL ALA PRO SER THR CYS SEQRES 1 L 213 ASP VAL VAL MET THR GLN THR PRO ALA SER VAL SER GLU SEQRES 2 L 213 PRO VAL GLY GLY THR VAL THR ILE LYS CYS GLN ALA SER SEQRES 3 L 213 GLN SER ILE SER SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 213 PRO GLY GLN ARG PRO ARG LEU LEU ILE TYR GLU THR SER SEQRES 5 L 213 THR LEU ALA SER GLY VAL PRO SER ARG PHE LYS GLY SER SEQRES 6 L 213 GLY SER GLY THR ASP PHE THR LEU THR ILE SER ASP LEU SEQRES 7 L 213 GLU CYS ALA ASP ALA ALA THR TYR TYR CYS GLN SER THR SEQRES 8 L 213 TYR GLU ASN PRO THR TYR VAL SER PHE GLY GLY GLY THR SEQRES 9 L 213 GLU VAL GLY VAL LYS GLY ASP PRO VAL ALA PRO THR VAL SEQRES 10 L 213 LEU ILE PHE PRO PRO SER ALA ASP LEU VAL ALA THR GLY SEQRES 11 L 213 THR VAL THR ILE VAL CYS VAL ALA ASN LYS TYR PHE PRO SEQRES 12 L 213 ASP VAL THR VAL THR TRP GLU VAL ASP GLY THR THR GLN SEQRES 13 L 213 THR THR GLY ILE GLU ASN SER LYS THR PRO GLN ASN SER SEQRES 14 L 213 ALA ASP CYS THR TYR ASN LEU SER SER THR LEU THR LEU SEQRES 15 L 213 THR SER THR GLU TYR ASN SER HIS LYS GLU TYR THR CYS SEQRES 16 L 213 LYS VAL THR GLN GLY THR THR SER VAL VAL GLN SER PHE SEQRES 17 L 213 ASN ARG GLY ASP CYS HET SO4 L 301 5 HETNAM SO4 SULFATE ION FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *434(H2 O) HELIX 1 1 THR H 60 LYS H 63 5 4 HELIX 2 2 THR H 83 THR H 87 5 5 HELIX 3 3 SER H 158 THR H 160 5 3 HELIX 4 4 PRO H 200 ASN H 203 5 4 HELIX 5 5 GLU L 79 ALA L 83 5 5 HELIX 6 6 SER L 123 ALA L 128 1 6 HELIX 7 7 SER L 184 SER L 189 1 6 HELIX 8 8 GLY L 211 CYS L 213 5 3 SHEET 1 A 4 SER H 2 SER H 6 0 SHEET 2 A 4 LEU H 17 SER H 24 -1 O THR H 22 N GLU H 4 SHEET 3 A 4 THR H 74 ILE H 79 -1 O ILE H 79 N LEU H 17 SHEET 4 A 4 PHE H 66 LYS H 70 -1 N THR H 67 O LYS H 78 SHEET 1 B 6 LEU H 10 VAL H 11 0 SHEET 2 B 6 THR H 109 VAL H 113 1 O THR H 112 N VAL H 11 SHEET 3 B 6 ALA H 88 LYS H 95 -1 N ALA H 88 O VAL H 111 SHEET 4 B 6 MET H 33 GLN H 38 -1 N VAL H 36 O PHE H 91 SHEET 5 B 6 LEU H 44 ILE H 50 -1 O ILE H 47 N TRP H 35 SHEET 6 B 6 ILE H 56 TYR H 58 -1 O TYR H 57 N ILE H 49 SHEET 1 C 4 LEU H 10 VAL H 11 0 SHEET 2 C 4 THR H 109 VAL H 113 1 O THR H 112 N VAL H 11 SHEET 3 C 4 ALA H 88 LYS H 95 -1 N ALA H 88 O VAL H 111 SHEET 4 C 4 GLY H 102 TRP H 105 -1 O LEU H 104 N ARG H 94 SHEET 1 D 4 SER H 122 LEU H 126 0 SHEET 2 D 4 VAL H 138 TYR H 147 -1 O GLY H 141 N LEU H 126 SHEET 3 D 4 TYR H 178 VAL H 186 -1 O LEU H 180 N VAL H 144 SHEET 4 D 4 VAL H 165 THR H 167 -1 N ARG H 166 O VAL H 183 SHEET 1 E 4 SER H 122 LEU H 126 0 SHEET 2 E 4 VAL H 138 TYR H 147 -1 O GLY H 141 N LEU H 126 SHEET 3 E 4 TYR H 178 VAL H 186 -1 O LEU H 180 N VAL H 144 SHEET 4 E 4 VAL H 171 ARG H 172 -1 N VAL H 171 O SER H 179 SHEET 1 F 3 THR H 153 TRP H 156 0 SHEET 2 F 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 155 SHEET 3 F 3 THR H 204 THR H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 G 4 MET L 4 THR L 7 0 SHEET 2 G 4 VAL L 19 ALA L 25 -1 O LYS L 22 N THR L 7 SHEET 3 G 4 ASP L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 G 4 PHE L 62 SER L 67 -1 N LYS L 63 O THR L 74 SHEET 1 H 6 SER L 10 PRO L 14 0 SHEET 2 H 6 THR L 104 LYS L 109 1 O LYS L 109 N GLU L 13 SHEET 3 H 6 ALA L 84 SER L 90 -1 N ALA L 84 O VAL L 106 SHEET 4 H 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 H 6 ARG L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 H 6 THR L 53 LEU L 54 -1 O THR L 53 N TYR L 49 SHEET 1 I 4 SER L 10 PRO L 14 0 SHEET 2 I 4 THR L 104 LYS L 109 1 O LYS L 109 N GLU L 13 SHEET 3 I 4 ALA L 84 SER L 90 -1 N ALA L 84 O VAL L 106 SHEET 4 I 4 SER L 99 PHE L 100 -1 O SER L 99 N SER L 90 SHEET 1 J 4 THR L 116 PHE L 120 0 SHEET 2 J 4 THR L 131 TYR L 141 -1 O ASN L 139 N THR L 116 SHEET 3 J 4 TYR L 174 THR L 183 -1 O SER L 178 N CYS L 136 SHEET 4 J 4 ILE L 160 LYS L 164 -1 N GLU L 161 O THR L 179 SHEET 1 K 4 THR L 154 THR L 155 0 SHEET 2 K 4 THR L 146 VAL L 151 -1 N VAL L 151 O THR L 154 SHEET 3 K 4 GLU L 192 GLN L 199 -1 O THR L 198 N THR L 146 SHEET 4 K 4 THR L 202 ASN L 209 -1 O VAL L 204 N VAL L 197 SSBOND 1 CYS H 21 CYS H 92 1555 1555 2.01 SSBOND 2 CYS H 129 CYS L 213 1555 1555 2.02 SSBOND 3 CYS H 130 CYS H 215 1555 1555 2.04 SSBOND 4 CYS H 142 CYS H 195 1555 1555 2.06 SSBOND 5 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 6 CYS L 80 CYS L 172 1555 1555 2.06 SSBOND 7 CYS L 136 CYS L 195 1555 1555 2.02 CISPEP 1 LEU H 148 PRO H 149 0 -4.78 CISPEP 2 GLU H 150 PRO H 151 0 -0.92 CISPEP 3 THR L 7 PRO L 8 0 -7.17 CISPEP 4 PHE L 142 PRO L 143 0 0.32 SITE 1 AC1 3 GLY L 41 GLN L 42 ARG L 43 CRYST1 132.934 42.184 86.179 90.00 114.93 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007523 0.000000 0.003496 0.00000 SCALE2 0.000000 0.023706 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012796 0.00000