HEADER OXIDOREDUCTASE 29-SEP-12 4HCF TITLE CRYSTAL STRUCTURE OF UNCHARACTERIZED CUPREDOXIN-LIKE DOMAIN PROTEIN TITLE 2 CUPREDOXIN_1 WITH COPPER BOUND FROM BACILLUS ANTHRACIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CUPREDOXIN 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 33-129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 198094; SOURCE 5 STRAIN: AMES; SOURCE 6 GENE: BA_1561, GBAA_1561; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLSMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 3 DISEASES, CSGID, BETA-FOLD, BETA SANDWICH, GREEK-KEY BETA BARREL, KEYWDS 4 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,N.MALTSEVA,S.SHATSMAN,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 03-APR-24 4HCF 1 REMARK SEQADV LINK REVDAT 1 17-OCT-12 4HCF 0 JRNL AUTH Y.KIM,N.MALTSEVA,S.SHATSMAN,W.F.ANDERSON,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED CUPREDOXIN-LIKE DOMAIN JRNL TITL 2 PROTEIN CUPREDOXIN_1 WITH COPPER BOUND FROM BACILLUS JRNL TITL 3 ANTHRACIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1161) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.43 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 21620 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1108 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.4349 - 3.4046 0.98 2578 136 0.1740 0.1991 REMARK 3 2 3.4046 - 2.7028 0.99 2593 135 0.1850 0.2063 REMARK 3 3 2.7028 - 2.3613 1.00 2563 154 0.1848 0.2181 REMARK 3 4 2.3613 - 2.1455 1.00 2609 136 0.1681 0.1954 REMARK 3 5 2.1455 - 1.9917 1.00 2581 153 0.1635 0.2203 REMARK 3 6 1.9917 - 1.8743 1.00 2567 152 0.1760 0.2333 REMARK 3 7 1.8743 - 1.7805 1.00 2588 128 0.1792 0.2305 REMARK 3 8 1.7805 - 1.7030 0.93 2433 114 0.1980 0.2240 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1475 REMARK 3 ANGLE : 1.199 1990 REMARK 3 CHIRALITY : 0.088 241 REMARK 3 PLANARITY : 0.004 246 REMARK 3 DIHEDRAL : 12.165 570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 22 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.3164 0.5651 49.2498 REMARK 3 T TENSOR REMARK 3 T11: 0.1339 T22: 0.2164 REMARK 3 T33: 0.2160 T12: 0.0031 REMARK 3 T13: 0.0212 T23: -0.0192 REMARK 3 L TENSOR REMARK 3 L11: 8.0598 L22: 5.1726 REMARK 3 L33: 4.1106 L12: -5.0571 REMARK 3 L13: 4.4403 L23: -0.9968 REMARK 3 S TENSOR REMARK 3 S11: -0.1191 S12: 0.1462 S13: -0.2176 REMARK 3 S21: -0.0152 S22: 0.0761 S23: -0.4950 REMARK 3 S31: -0.0515 S32: 0.2102 S33: 0.1710 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.9992 6.6589 40.7215 REMARK 3 T TENSOR REMARK 3 T11: 0.1461 T22: 0.1914 REMARK 3 T33: 0.1680 T12: -0.0459 REMARK 3 T13: 0.0224 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 4.4185 L22: 2.3362 REMARK 3 L33: 2.0317 L12: -2.7255 REMARK 3 L13: 2.8663 L23: -1.4491 REMARK 3 S TENSOR REMARK 3 S11: -0.1471 S12: 0.3459 S13: -0.0813 REMARK 3 S21: 0.1462 S22: 0.0046 S23: -0.0014 REMARK 3 S31: -0.6684 S32: 0.2875 S33: 0.0618 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 60 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0649 -5.5440 43.6391 REMARK 3 T TENSOR REMARK 3 T11: 0.1743 T22: 0.1657 REMARK 3 T33: 0.1736 T12: 0.0155 REMARK 3 T13: -0.0562 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.8520 L22: 8.0920 REMARK 3 L33: 6.5184 L12: 1.5999 REMARK 3 L13: -1.9379 L23: -6.8758 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0415 S13: 0.1086 REMARK 3 S21: -0.2211 S22: -0.6920 S23: -0.4837 REMARK 3 S31: -0.1906 S32: 0.4025 S33: 0.6940 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 61 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5878 -15.0221 54.5372 REMARK 3 T TENSOR REMARK 3 T11: 0.2341 T22: 0.2104 REMARK 3 T33: 0.2671 T12: -0.0120 REMARK 3 T13: -0.0066 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.0916 L22: 4.6020 REMARK 3 L33: 6.9423 L12: 0.5417 REMARK 3 L13: 0.6645 L23: 5.6554 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0184 S13: -0.4028 REMARK 3 S21: 0.8236 S22: 0.1843 S23: -0.0359 REMARK 3 S31: 1.0072 S32: 0.1638 S33: -0.3693 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 66 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.6817 1.6316 52.6744 REMARK 3 T TENSOR REMARK 3 T11: 0.1566 T22: 0.2003 REMARK 3 T33: 0.1914 T12: -0.0094 REMARK 3 T13: -0.0095 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.7415 L22: 5.3848 REMARK 3 L33: 1.7296 L12: -3.0531 REMARK 3 L13: 1.7362 L23: -3.0396 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.1335 S13: -0.0868 REMARK 3 S21: -0.0396 S22: -0.0982 S23: -0.1129 REMARK 3 S31: 0.2068 S32: 0.0799 S33: 0.0634 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 73 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.6566 13.6292 46.2351 REMARK 3 T TENSOR REMARK 3 T11: 0.2939 T22: 0.1525 REMARK 3 T33: 0.2185 T12: -0.0221 REMARK 3 T13: 0.0145 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 9.2512 L22: 2.6502 REMARK 3 L33: 5.3421 L12: 2.4183 REMARK 3 L13: -2.8733 L23: -0.9201 REMARK 3 S TENSOR REMARK 3 S11: -0.3431 S12: 0.0447 S13: 0.8478 REMARK 3 S21: -0.4015 S22: 0.0569 S23: -0.1025 REMARK 3 S31: -0.3671 S32: 0.2141 S33: 0.0746 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0168 -0.5205 49.3877 REMARK 3 T TENSOR REMARK 3 T11: 0.1812 T22: 0.1766 REMARK 3 T33: 0.1967 T12: 0.0036 REMARK 3 T13: -0.0133 T23: -0.0164 REMARK 3 L TENSOR REMARK 3 L11: 2.2272 L22: 2.1696 REMARK 3 L33: 0.9898 L12: 0.1039 REMARK 3 L13: -1.2783 L23: -0.8279 REMARK 3 S TENSOR REMARK 3 S11: 0.0810 S12: 0.1114 S13: -0.1975 REMARK 3 S21: -0.2035 S22: -0.2088 S23: 0.4660 REMARK 3 S31: 0.2228 S32: -0.0020 S33: 0.1355 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0305 5.4398 55.1722 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1842 REMARK 3 T33: 0.1995 T12: 0.0040 REMARK 3 T13: 0.0294 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 1.1977 L22: 9.7597 REMARK 3 L33: 2.8995 L12: 0.0103 REMARK 3 L13: 0.6221 L23: -1.3691 REMARK 3 S TENSOR REMARK 3 S11: -0.2128 S12: -0.2220 S13: 0.1911 REMARK 3 S21: 0.7517 S22: 0.1693 S23: 0.4427 REMARK 3 S31: -0.4464 S32: -0.2112 S33: 0.0617 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.9698 -10.7617 47.3154 REMARK 3 T TENSOR REMARK 3 T11: 0.1867 T22: 0.1703 REMARK 3 T33: 0.2329 T12: -0.0184 REMARK 3 T13: -0.0057 T23: 0.0373 REMARK 3 L TENSOR REMARK 3 L11: 1.2804 L22: 5.7864 REMARK 3 L33: 1.2168 L12: -1.9232 REMARK 3 L13: 0.1990 L23: 0.2294 REMARK 3 S TENSOR REMARK 3 S11: 0.2192 S12: -0.1167 S13: -0.3572 REMARK 3 S21: -0.4966 S22: -0.0230 S23: 0.4694 REMARK 3 S31: 0.6140 S32: 0.1563 S33: -0.2021 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5420 5.8884 40.7265 REMARK 3 T TENSOR REMARK 3 T11: 0.1257 T22: 0.1604 REMARK 3 T33: 0.1245 T12: -0.0037 REMARK 3 T13: -0.0054 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 5.7445 L22: 5.4447 REMARK 3 L33: 6.8544 L12: -1.3384 REMARK 3 L13: 0.5442 L23: 1.1985 REMARK 3 S TENSOR REMARK 3 S11: 0.0855 S12: -0.1134 S13: 0.0177 REMARK 3 S21: 0.2120 S22: 0.1077 S23: 0.3969 REMARK 3 S31: 0.0092 S32: -0.6790 S33: -0.3109 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0958 -9.0973 42.6493 REMARK 3 T TENSOR REMARK 3 T11: 0.2063 T22: 0.1472 REMARK 3 T33: 0.1743 T12: 0.0000 REMARK 3 T13: -0.0294 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 1.9193 L22: 9.2034 REMARK 3 L33: 0.2815 L12: -3.9011 REMARK 3 L13: 0.3235 L23: -1.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: 0.1540 S13: -0.2448 REMARK 3 S21: 0.3064 S22: 0.2134 S23: 0.2520 REMARK 3 S31: 0.0930 S32: 0.0211 S33: -0.0947 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 33 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.0134 2.6521 27.9950 REMARK 3 T TENSOR REMARK 3 T11: 0.2859 T22: 0.2540 REMARK 3 T33: 0.2149 T12: 0.0004 REMARK 3 T13: -0.0287 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.6648 L22: 9.2414 REMARK 3 L33: 5.0322 L12: -1.2316 REMARK 3 L13: 0.3200 L23: -6.3227 REMARK 3 S TENSOR REMARK 3 S11: 0.0339 S12: -0.3898 S13: -0.5656 REMARK 3 S21: 0.8805 S22: 0.1344 S23: 0.2427 REMARK 3 S31: 0.2133 S32: -0.1172 S33: -0.1188 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 43 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4774 -1.6477 20.5206 REMARK 3 T TENSOR REMARK 3 T11: 0.1480 T22: 0.1660 REMARK 3 T33: 0.1791 T12: -0.0035 REMARK 3 T13: -0.0049 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 4.5170 L22: 2.1878 REMARK 3 L33: 1.8164 L12: -2.1408 REMARK 3 L13: -1.0424 L23: 0.2662 REMARK 3 S TENSOR REMARK 3 S11: -0.2174 S12: 0.2894 S13: -0.3691 REMARK 3 S21: -0.0642 S22: 0.0370 S23: 0.3835 REMARK 3 S31: 0.1321 S32: -0.1146 S33: 0.0528 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5980 9.6179 19.7741 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1757 REMARK 3 T33: 0.2257 T12: 0.0431 REMARK 3 T13: 0.0079 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 2.2355 L22: 1.5193 REMARK 3 L33: 0.1743 L12: -1.8314 REMARK 3 L13: -0.6398 L23: 0.5204 REMARK 3 S TENSOR REMARK 3 S11: 0.2261 S12: 0.0929 S13: 0.1577 REMARK 3 S21: -0.0052 S22: -0.2858 S23: -0.0416 REMARK 3 S31: -0.1497 S32: -0.0176 S33: -0.0573 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 62 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0207 7.2233 25.5375 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.1619 REMARK 3 T33: 0.2041 T12: 0.0071 REMARK 3 T13: -0.0097 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 2.9300 L22: 8.4762 REMARK 3 L33: 0.9900 L12: 0.0448 REMARK 3 L13: -0.2834 L23: -1.0634 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0615 S13: 0.3617 REMARK 3 S21: -0.1680 S22: 0.1174 S23: 0.8140 REMARK 3 S31: -0.3010 S32: -0.0896 S33: -0.0455 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2248 -10.5769 25.2669 REMARK 3 T TENSOR REMARK 3 T11: 0.2546 T22: 0.1667 REMARK 3 T33: 0.2451 T12: -0.0075 REMARK 3 T13: -0.0044 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 7.9779 L22: 9.0391 REMARK 3 L33: 3.9256 L12: -1.2533 REMARK 3 L13: 1.9219 L23: -1.0913 REMARK 3 S TENSOR REMARK 3 S11: 0.2271 S12: 0.4580 S13: -0.9382 REMARK 3 S21: -0.1781 S22: -0.2184 S23: -0.2367 REMARK 3 S31: 0.2023 S32: 0.2824 S33: 0.0207 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7203 3.6862 31.7117 REMARK 3 T TENSOR REMARK 3 T11: 0.1408 T22: 0.1780 REMARK 3 T33: 0.1514 T12: -0.0225 REMARK 3 T13: -0.0060 T23: 0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.7375 L22: 9.0869 REMARK 3 L33: 1.2277 L12: -0.4054 REMARK 3 L13: -0.3326 L23: 0.6373 REMARK 3 S TENSOR REMARK 3 S11: -0.0268 S12: -0.0504 S13: 0.1731 REMARK 3 S21: 0.3322 S22: 0.0220 S23: -0.2144 REMARK 3 S31: -0.0861 S32: 0.1648 S33: -0.0468 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8520 -2.3577 29.3090 REMARK 3 T TENSOR REMARK 3 T11: 0.2801 T22: 0.2176 REMARK 3 T33: 0.1842 T12: -0.0299 REMARK 3 T13: -0.0203 T23: 0.0223 REMARK 3 L TENSOR REMARK 3 L11: 4.6499 L22: 2.4431 REMARK 3 L33: 0.6443 L12: -3.3378 REMARK 3 L13: -1.0137 L23: 0.6269 REMARK 3 S TENSOR REMARK 3 S11: -0.1900 S12: -0.0551 S13: -0.3052 REMARK 3 S21: -0.0043 S22: 0.1339 S23: 0.1536 REMARK 3 S31: -0.0918 S32: -0.0191 S33: -0.0314 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2667 18.4853 29.8438 REMARK 3 T TENSOR REMARK 3 T11: 0.2746 T22: 0.2127 REMARK 3 T33: 0.4230 T12: -0.0504 REMARK 3 T13: 0.0880 T23: -0.0892 REMARK 3 L TENSOR REMARK 3 L11: 3.8304 L22: 2.0635 REMARK 3 L33: 3.0013 L12: 2.5905 REMARK 3 L13: -1.1068 L23: -1.6671 REMARK 3 S TENSOR REMARK 3 S11: 0.4162 S12: -0.6844 S13: 1.6516 REMARK 3 S21: 0.4832 S22: -0.1736 S23: 0.5220 REMARK 3 S31: -0.0131 S32: -0.2836 S33: -0.4176 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.4392 10.6342 26.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.1650 T22: 0.1359 REMARK 3 T33: 0.1336 T12: -0.0162 REMARK 3 T13: 0.0453 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 5.8059 L22: 7.9578 REMARK 3 L33: 1.2336 L12: -6.3116 REMARK 3 L13: 2.1309 L23: -1.6186 REMARK 3 S TENSOR REMARK 3 S11: 0.0469 S12: 0.3438 S13: 0.6360 REMARK 3 S21: -0.9216 S22: -0.1312 S23: -0.9194 REMARK 3 S31: -0.2346 S32: -0.0103 S33: 0.0252 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6212 -2.3826 28.2830 REMARK 3 T TENSOR REMARK 3 T11: 0.1015 T22: 0.1659 REMARK 3 T33: 0.1510 T12: 0.0197 REMARK 3 T13: -0.0041 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 8.0978 L22: 4.4616 REMARK 3 L33: 7.3733 L12: 1.5033 REMARK 3 L13: -1.2636 L23: -2.5868 REMARK 3 S TENSOR REMARK 3 S11: -0.2082 S12: -0.3434 S13: -0.0213 REMARK 3 S21: 0.1657 S22: 0.0896 S23: -0.1180 REMARK 3 S31: 0.3905 S32: 0.4495 S33: -0.0781 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7655 12.0760 21.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.2512 T22: 0.1775 REMARK 3 T33: 0.2894 T12: -0.0039 REMARK 3 T13: 0.0452 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.6591 L22: 9.9760 REMARK 3 L33: 2.5000 L12: -2.3512 REMARK 3 L13: 1.2515 L23: -4.5612 REMARK 3 S TENSOR REMARK 3 S11: 0.2624 S12: 0.0584 S13: 0.7301 REMARK 3 S21: 0.0124 S22: -0.0051 S23: -0.7328 REMARK 3 S31: -0.0648 S32: 0.0257 S33: 0.1277 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075291. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51800 REMARK 200 FOR SHELL : 2.480 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: STRUCTURE OF THE SAME PROTEIN (CUPREDOXIN_1) REMARK 200 WITHOUT COPPER BOUND REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 120 MM MAGNESSIUM SULFATE, 150 MM REMARK 280 FORMATE PH 4.0, 38.6 % W/V PEG1000, 10 MM COPPER CHLORIDE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.79700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 20.12520 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 36.05550 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 29 REMARK 465 ASN A 30 REMARK 465 ALA A 31 REMARK 465 ASN A 32 REMARK 465 ASP A 33 REMARK 465 LEU A 34 REMARK 465 ALA A 35 REMARK 465 GLN A 36 REMARK 465 PRO A 37 REMARK 465 ILE A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 SER B 29 REMARK 465 ASN B 30 REMARK 465 ALA B 31 REMARK 465 ASN B 32 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH A 336 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 ND1 REMARK 620 2 CYS A 113 SG 136.7 REMARK 620 3 HIS A 116 ND1 91.8 115.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 201 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 78 ND1 REMARK 620 2 CYS B 113 SG 136.7 REMARK 620 3 HIS B 116 ND1 94.5 115.2 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP05418 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4HCG RELATED DB: PDB REMARK 900 RELATED ID: 4HCI RELATED DB: PDB DBREF 4HCF A 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 DBREF 4HCF B 32 128 UNP Q81ST4 Q81ST4_BACAN 33 129 SEQADV 4HCF SER A 29 UNP Q81ST4 EXPRESSION TAG SEQADV 4HCF ASN A 30 UNP Q81ST4 EXPRESSION TAG SEQADV 4HCF ALA A 31 UNP Q81ST4 EXPRESSION TAG SEQADV 4HCF SER B 29 UNP Q81ST4 EXPRESSION TAG SEQADV 4HCF ASN B 30 UNP Q81ST4 EXPRESSION TAG SEQADV 4HCF ALA B 31 UNP Q81ST4 EXPRESSION TAG SEQRES 1 A 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 A 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 A 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 A 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 A 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 A 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 A 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 A 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS SEQRES 1 B 100 SER ASN ALA ASN ASP LEU ALA GLN PRO ILE ALA SER ALA SEQRES 2 B 100 LYS VAL ILE GLU VAL GLU LEU ASN ASP ASP TYR PHE ASN SEQRES 3 B 100 PRO ASN VAL ILE THR ILE PRO ILE ASN GLU SER THR THR SEQRES 4 B 100 LEU LEU LEU LYS ASN LYS GLY LYS SER GLU HIS THR PHE SEQRES 5 B 100 THR ILE LYS LYS LEU GLY ILE ASP VAL VAL VAL GLU SER SEQRES 6 B 100 GLY LYS GLU LYS ASN ILE THR VAL LYS PRO LYS SER ALA SEQRES 7 B 100 GLY THR TYR GLU LEU ILE CYS ARG TYR HIS LEU LEU LYS SEQRES 8 B 100 GLY MSE GLU GLY LYS VAL ILE VAL LYS MODRES 4HCF MSE A 121 MET SELENOMETHIONINE MODRES 4HCF MSE B 121 MET SELENOMETHIONINE HET MSE A 121 8 HET MSE B 121 8 HET CU A 201 1 HET SO4 A 202 5 HET CU B 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CU COPPER (II) ION HETNAM SO4 SULFATE ION FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 CU 2(CU 2+) FORMUL 4 SO4 O4 S 2- FORMUL 6 HOH *120(H2 O) HELIX 1 1 LYS A 83 GLY A 86 5 4 HELIX 2 2 HIS A 116 GLY A 120 5 5 HELIX 3 3 LYS B 83 GLY B 86 5 4 HELIX 4 4 HIS B 116 GLY B 120 5 5 SHEET 1 A 4 TYR A 52 ASN A 54 0 SHEET 2 A 4 LYS A 42 ASN A 49 -1 N GLU A 47 O ASN A 54 SHEET 3 A 4 THR A 66 ASN A 72 1 O LYS A 71 N LEU A 48 SHEET 4 A 4 GLU A 96 VAL A 101 -1 O ILE A 99 N LEU A 68 SHEET 1 B 3 VAL A 57 ILE A 60 0 SHEET 2 B 3 GLU A 122 VAL A 127 1 O ILE A 126 N ILE A 58 SHEET 3 B 3 GLY A 107 ILE A 112 -1 N GLY A 107 O VAL A 127 SHEET 1 C 2 HIS A 78 ILE A 82 0 SHEET 2 C 2 ILE A 87 VAL A 91 -1 O VAL A 91 N HIS A 78 SHEET 1 D 4 TYR B 52 ASN B 54 0 SHEET 2 D 4 VAL B 43 ASN B 49 -1 N GLU B 47 O ASN B 54 SHEET 3 D 4 THR B 66 ASN B 72 1 O LEU B 69 N VAL B 46 SHEET 4 D 4 GLU B 96 VAL B 101 -1 O ILE B 99 N LEU B 68 SHEET 1 E 3 VAL B 57 PRO B 61 0 SHEET 2 E 3 GLU B 122 LYS B 128 1 O ILE B 126 N ILE B 58 SHEET 3 E 3 GLY B 107 ILE B 112 -1 N GLY B 107 O VAL B 127 SHEET 1 F 2 HIS B 78 ILE B 82 0 SHEET 2 F 2 ILE B 87 VAL B 91 -1 O VAL B 91 N HIS B 78 LINK C GLY A 120 N MSE A 121 1555 1555 1.33 LINK C MSE A 121 N GLU A 122 1555 1555 1.32 LINK C GLY B 120 N MSE B 121 1555 1555 1.34 LINK C MSE B 121 N GLU B 122 1555 1555 1.32 LINK ND1 HIS A 78 CU CU A 201 1555 1555 2.12 LINK SG CYS A 113 CU CU A 201 1555 1555 2.22 LINK ND1 HIS A 116 CU CU A 201 1555 1555 2.15 LINK ND1 HIS B 78 CU CU B 201 1555 1555 2.05 LINK SG CYS B 113 CU CU B 201 1555 1555 2.21 LINK ND1 HIS B 116 CU CU B 201 1555 1555 2.21 CISPEP 1 ASP A 50 ASP A 51 0 -12.41 CISPEP 2 ASN A 54 PRO A 55 0 2.62 CISPEP 3 ASP B 50 ASP B 51 0 -11.36 CISPEP 4 ASN B 54 PRO B 55 0 2.81 SITE 1 AC1 4 HIS A 78 CYS A 113 HIS A 116 MSE A 121 SITE 1 AC2 6 LYS A 42 VAL A 43 GLU B 45 GLU B 47 SITE 2 AC2 6 LYS B 71 LYS B 73 SITE 1 AC3 4 HIS B 78 CYS B 113 HIS B 116 MSE B 121 CRYST1 38.275 73.594 40.366 90.00 116.72 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026127 0.000000 0.013151 0.00000 SCALE2 0.000000 0.013588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027735 0.00000