HEADER TRANSFERASE 01-OCT-12 4HD1 TITLE CRYSTAL STRUCTURE OF SQUALENE SYNTHASE HPNC FROM ALICYCLOBACILLUS TITLE 2 ACIDOCALDARIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SQUALENE SYNTHASE HPNC; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.32; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ALICYCLOBACILLUS ACIDOCALDARIUS SUBSP. SOURCE 3 ACIDOCALDARIUS; SOURCE 4 ORGANISM_TAXID: 521098; SOURCE 5 STRAIN: ATCC 27009 / DSM 446 / 104-1A; SOURCE 6 GENE: AACI_2442; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG57 KEYWDS MCSG, STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CHANG,J.BEARDEN,H.LI,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 15-NOV-17 4HD1 1 REMARK REVDAT 1 24-OCT-12 4HD1 0 JRNL AUTH C.CHANG,J.BEARDEN,H.LI,A.JOACHIMIAK JRNL TITL CRYSTAL STRUCTURE OF SQUALENE SYNTHASE HPNC FROM JRNL TITL 2 ALICYCLOBACILLUS ACIDOCALDARIUS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 17091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 866 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2116 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.99000 REMARK 3 B22 (A**2) : -0.99000 REMARK 3 B33 (A**2) : 1.48000 REMARK 3 B12 (A**2) : -0.49000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.223 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.503 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2173 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2938 ; 1.046 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 264 ; 4.135 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 121 ;29.333 ;21.405 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 359 ;16.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;18.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1719 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2172 ; 2.519 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 25 ;21.930 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2150 ;12.569 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -1 A 23 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0000 84.1820 43.1670 REMARK 3 T TENSOR REMARK 3 T11: 0.4623 T22: 0.4540 REMARK 3 T33: 0.5000 T12: -0.0285 REMARK 3 T13: -0.1973 T23: 0.1220 REMARK 3 L TENSOR REMARK 3 L11: 1.6710 L22: 4.6871 REMARK 3 L33: 1.2313 L12: 0.7623 REMARK 3 L13: 1.3781 L23: 0.0469 REMARK 3 S TENSOR REMARK 3 S11: -0.1139 S12: -0.3056 S13: -0.0662 REMARK 3 S21: -0.1839 S22: 0.2278 S23: -0.2155 REMARK 3 S31: -0.0259 S32: -0.3450 S33: -0.1140 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 24 A 28 REMARK 3 ORIGIN FOR THE GROUP (A): 38.3430 74.1620 54.3350 REMARK 3 T TENSOR REMARK 3 T11: 1.2778 T22: 0.6739 REMARK 3 T33: 0.5277 T12: -0.1315 REMARK 3 T13: -0.5155 T23: 0.1751 REMARK 3 L TENSOR REMARK 3 L11: 15.6579 L22: 0.1849 REMARK 3 L33: 10.0918 L12: -0.6855 REMARK 3 L13: 9.7735 L23: -1.1371 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: 1.9494 S13: 0.6329 REMARK 3 S21: -0.1948 S22: -0.2172 S23: 0.0432 REMARK 3 S31: 1.1492 S32: 2.1701 S33: 0.0981 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 29 A 43 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6920 82.7700 51.4020 REMARK 3 T TENSOR REMARK 3 T11: 0.4494 T22: 0.4337 REMARK 3 T33: 0.4873 T12: -0.0352 REMARK 3 T13: -0.1257 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 3.0131 L22: 2.2275 REMARK 3 L33: 5.0277 L12: -2.1743 REMARK 3 L13: 1.1349 L23: 0.9179 REMARK 3 S TENSOR REMARK 3 S11: 0.1756 S12: -0.2891 S13: -0.0936 REMARK 3 S21: -0.1966 S22: 0.1418 S23: -0.0097 REMARK 3 S31: -0.0702 S32: -0.2493 S33: -0.3175 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 44 A 57 REMARK 3 ORIGIN FOR THE GROUP (A): 40.5750 68.3650 40.2910 REMARK 3 T TENSOR REMARK 3 T11: 0.5380 T22: 0.4097 REMARK 3 T33: 0.5760 T12: -0.0314 REMARK 3 T13: -0.2493 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.3697 L22: 6.7681 REMARK 3 L33: 6.9930 L12: 0.8553 REMARK 3 L13: 1.4911 L23: 4.7988 REMARK 3 S TENSOR REMARK 3 S11: 0.1479 S12: -0.0354 S13: -0.0224 REMARK 3 S21: 0.4102 S22: -0.2936 S23: 0.4168 REMARK 3 S31: 0.2787 S32: -0.5661 S33: 0.1457 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 63 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0810 60.4280 31.0530 REMARK 3 T TENSOR REMARK 3 T11: 1.8807 T22: 0.6131 REMARK 3 T33: 1.5114 T12: -0.2750 REMARK 3 T13: -1.3622 T23: -0.1056 REMARK 3 L TENSOR REMARK 3 L11: 48.9336 L22: 84.2092 REMARK 3 L33: 38.4430 L12: 4.4388 REMARK 3 L13: 41.0025 L23: 20.9165 REMARK 3 S TENSOR REMARK 3 S11: 1.0915 S12: 1.8039 S13: 0.6139 REMARK 3 S21: -5.8893 S22: -2.8513 S23: 8.9981 REMARK 3 S31: 0.3642 S32: 0.8954 S33: 1.7598 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 64 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 45.7130 68.4170 29.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.6593 T22: 0.4461 REMARK 3 T33: 0.3290 T12: -0.0044 REMARK 3 T13: -0.2794 T23: -0.1315 REMARK 3 L TENSOR REMARK 3 L11: 0.7706 L22: 20.3966 REMARK 3 L33: 7.7790 L12: -3.4422 REMARK 3 L13: 1.5630 L23: -2.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.2306 S12: 0.0991 S13: -0.0070 REMARK 3 S21: -1.2331 S22: -0.5107 S23: 0.3546 REMARK 3 S31: 0.2501 S32: 0.2041 S33: 0.2802 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9990 80.5370 33.8740 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.4976 REMARK 3 T33: 0.5159 T12: 0.0246 REMARK 3 T13: -0.1231 T23: 0.0696 REMARK 3 L TENSOR REMARK 3 L11: 0.1154 L22: 2.6812 REMARK 3 L33: 0.9013 L12: 0.0359 REMARK 3 L13: -0.0430 L23: -1.5432 REMARK 3 S TENSOR REMARK 3 S11: 0.0774 S12: 0.1306 S13: 0.1833 REMARK 3 S21: -0.3307 S22: 0.0211 S23: 0.0596 REMARK 3 S31: 0.1721 S32: 0.0107 S33: -0.0985 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 130 REMARK 3 ORIGIN FOR THE GROUP (A): 52.1860 59.1910 41.8040 REMARK 3 T TENSOR REMARK 3 T11: 0.6222 T22: 0.3602 REMARK 3 T33: 0.4404 T12: 0.0489 REMARK 3 T13: -0.2384 T23: -0.1241 REMARK 3 L TENSOR REMARK 3 L11: 0.7854 L22: 3.5991 REMARK 3 L33: 0.5198 L12: 1.1604 REMARK 3 L13: -0.4434 L23: -0.0412 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.2236 S13: -0.1245 REMARK 3 S21: -0.0979 S22: 0.0158 S23: -0.2322 REMARK 3 S31: 0.0902 S32: -0.1175 S33: -0.0143 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 131 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9180 63.0870 50.6300 REMARK 3 T TENSOR REMARK 3 T11: 0.5939 T22: 0.3545 REMARK 3 T33: 0.4503 T12: -0.0123 REMARK 3 T13: -0.2224 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 0.7664 L22: 1.1807 REMARK 3 L33: 1.1355 L12: 0.5852 REMARK 3 L13: -0.1206 L23: 0.7871 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0720 S13: 0.0260 REMARK 3 S21: 0.1156 S22: 0.0063 S23: -0.0338 REMARK 3 S31: 0.2398 S32: -0.0118 S33: -0.0183 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 190 REMARK 3 ORIGIN FOR THE GROUP (A): 53.3220 41.8890 55.7110 REMARK 3 T TENSOR REMARK 3 T11: 1.1520 T22: 0.2652 REMARK 3 T33: 0.5776 T12: -0.0515 REMARK 3 T13: -0.4199 T23: -0.0641 REMARK 3 L TENSOR REMARK 3 L11: 17.4041 L22: 37.5390 REMARK 3 L33: 14.9923 L12: -25.4956 REMARK 3 L13: 16.1131 L23: -23.6438 REMARK 3 S TENSOR REMARK 3 S11: 0.7170 S12: -0.0954 S13: -0.5051 REMARK 3 S21: -1.3423 S22: -0.0327 S23: 0.7916 REMARK 3 S31: 0.8815 S32: -0.0650 S33: -0.6843 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 191 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 41.7140 40.5650 53.4490 REMARK 3 T TENSOR REMARK 3 T11: 1.5683 T22: 0.3953 REMARK 3 T33: 0.4410 T12: -0.5099 REMARK 3 T13: -0.2015 T23: -0.2105 REMARK 3 L TENSOR REMARK 3 L11: 19.8753 L22: 8.1222 REMARK 3 L33: 0.1622 L12: 12.6988 REMARK 3 L13: -1.7501 L23: -1.1133 REMARK 3 S TENSOR REMARK 3 S11: -0.2812 S12: 0.3012 S13: -1.2705 REMARK 3 S21: -0.1156 S22: 0.1755 S23: -0.8384 REMARK 3 S31: 0.0477 S32: -0.0455 S33: 0.1058 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 202 A 247 REMARK 3 ORIGIN FOR THE GROUP (A): 52.9240 63.5330 61.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.5726 T22: 0.3835 REMARK 3 T33: 0.4803 T12: -0.0355 REMARK 3 T13: -0.2565 T23: -0.0219 REMARK 3 L TENSOR REMARK 3 L11: 0.4411 L22: 2.0198 REMARK 3 L33: 1.7368 L12: 0.8323 REMARK 3 L13: -0.2837 L23: 0.2349 REMARK 3 S TENSOR REMARK 3 S11: 0.0607 S12: 0.0119 S13: 0.0336 REMARK 3 S21: 0.2315 S22: 0.0088 S23: -0.0860 REMARK 3 S31: 0.2871 S32: -0.1013 S33: -0.0696 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 248 A 261 REMARK 3 ORIGIN FOR THE GROUP (A): 43.2280 53.4380 64.6540 REMARK 3 T TENSOR REMARK 3 T11: 0.8122 T22: 0.4573 REMARK 3 T33: 0.3989 T12: -0.3526 REMARK 3 T13: -0.1969 T23: -0.1400 REMARK 3 L TENSOR REMARK 3 L11: 3.9251 L22: 9.6212 REMARK 3 L33: 3.5237 L12: 2.0425 REMARK 3 L13: -3.4816 L23: -0.2731 REMARK 3 S TENSOR REMARK 3 S11: -0.2479 S12: -0.1635 S13: -0.1207 REMARK 3 S21: 0.5683 S22: -0.1175 S23: 0.4954 REMARK 3 S31: 0.4652 S32: -0.1028 S33: 0.3654 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17122 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 14.40 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 14.3 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.98500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, MLPHARE, DM, SHELXDE, RESOLVE, CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FLUORIDE, 20% PEG3350, PH REMARK 280 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.68067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.36133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.52100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.20167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.84033 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 31.68067 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 63.36133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 79.20167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.52100 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.84033 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ALA A 262 REMARK 465 GLY A 263 REMARK 465 ARG A 264 REMARK 465 PRO A 265 REMARK 465 VAL A 266 REMARK 465 VAL A 267 REMARK 465 SER A 268 REMARK 465 GLY A 269 REMARK 465 LYS A 270 REMARK 465 GLN A 271 REMARK 465 LYS A 272 REMARK 465 LEU A 273 REMARK 465 ARG A 274 REMARK 465 ILE A 275 REMARK 465 ALA A 276 REMARK 465 LEU A 277 REMARK 465 SER A 278 REMARK 465 VAL A 279 REMARK 465 LEU A 280 REMARK 465 ALA A 281 REMARK 465 GLY A 282 REMARK 465 GLY A 283 REMARK 465 ALA A 284 REMARK 465 LYS A 285 REMARK 465 GLY A 286 REMARK 465 GLU A 287 REMARK 465 GLY A 288 REMARK 465 GLY A 289 REMARK 465 SER A 290 REMARK 465 ALA A 291 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 54 36.49 -94.33 REMARK 500 ASP A 61 93.82 -68.36 REMARK 500 ARG A 225 -36.06 -36.78 REMARK 500 PRO A 260 -166.12 -75.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC107166 RELATED DB: TARGETTRACK DBREF 4HD1 A 1 291 UNP C8WSG3 C8WSG3_ALIAD 1 291 SEQADV 4HD1 SER A -2 UNP C8WSG3 EXPRESSION TAG SEQADV 4HD1 ASN A -1 UNP C8WSG3 EXPRESSION TAG SEQADV 4HD1 ALA A 0 UNP C8WSG3 EXPRESSION TAG SEQRES 1 A 294 SER ASN ALA MSE GLY SER VAL PRO VAL GLU LEU ARG GLY SEQRES 2 A 294 ASP PHE GLU VAL CYS ARG ARG LEU THR ARG SER HIS TYR SEQRES 3 A 294 GLU ASN PHE SER VAL VAL SER LEU PHE VAL PRO ARG HIS SEQRES 4 A 294 LEU ARG PRO HIS PHE TYR SER VAL TYR ALA PHE CYS ARG SEQRES 5 A 294 GLY VAL ASP ASP LEU GLY ASP GLU PHE ALA GLY ASP ARG SEQRES 6 A 294 MSE ALA ALA LEU ASP ALA TYR GLU GLU GLU LEU ARG ARG SEQRES 7 A 294 ALA PHE ALA GLY GLU ALA THR THR PRO ALA PHE ARG ALA SEQRES 8 A 294 LEU GLN PHE THR ILE ALA THR CYS ASN LEU PRO MSE GLU SEQRES 9 A 294 PRO PHE LEU ARG LEU ILE GLU ALA ASN ARG ARG ASP GLN SEQRES 10 A 294 ARG LYS HIS THR TYR ASP THR TRP GLU ASP LEU ARG ASP SEQRES 11 A 294 TYR CYS ARG TYR SER ALA ASP PRO VAL GLY ARG LEU VAL SEQRES 12 A 294 LEU GLY ILE PHE GLY CYS LEU ASP ASP GLU ARG ALA ARG SEQRES 13 A 294 LEU SER ASP ALA THR CYS THR ALA LEU GLN VAL ALA ASN SEQRES 14 A 294 HIS MSE GLN ASP ILE ASP ARG ASP LEU ALA LEU GLY ARG SEQRES 15 A 294 ILE TYR VAL PRO ARG ALA ASP LEU GLU GLN PHE GLY ALA SEQRES 16 A 294 THR LEU ASP ASP ILE ARG ALA ARG ARG ALA THR ASP GLY SEQRES 17 A 294 VAL ARG ARG CYS ILE ALA LEU GLU VAL ASP ARG ALA GLN SEQRES 18 A 294 ALA LEU PHE ASP GLU GLY ARG ARG LEU GLU SER LEU VAL SEQRES 19 A 294 PRO PRO ARG LEU ALA ARG GLN LEU LYS LEU TYR ARG LEU SEQRES 20 A 294 GLY GLY GLU ALA ILE LEU ALA ALA ILE ARG ARG GLN GLY SEQRES 21 A 294 TYR ASN PRO PHE ALA GLY ARG PRO VAL VAL SER GLY LYS SEQRES 22 A 294 GLN LYS LEU ARG ILE ALA LEU SER VAL LEU ALA GLY GLY SEQRES 23 A 294 ALA LYS GLY GLU GLY GLY SER ALA MODRES 4HD1 MSE A 1 MET SELENOMETHIONINE MODRES 4HD1 MSE A 63 MET SELENOMETHIONINE MODRES 4HD1 MSE A 100 MET SELENOMETHIONINE MODRES 4HD1 MSE A 168 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 63 8 HET MSE A 100 8 HET MSE A 168 8 HET SO4 A 301 5 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 SO4 O4 S 2- FORMUL 3 HOH *43(H2 O) HELIX 1 1 ASN A -1 VAL A 4 5 6 HELIX 2 2 PRO A 5 GLU A 7 5 3 HELIX 3 3 LEU A 8 TYR A 23 1 16 HELIX 4 4 ASN A 25 SER A 30 1 6 HELIX 5 5 LEU A 37 LEU A 54 1 18 HELIX 6 6 ASP A 61 GLY A 79 1 19 HELIX 7 7 THR A 83 ASN A 97 1 15 HELIX 8 8 MSE A 100 LYS A 116 1 17 HELIX 9 9 THR A 121 ALA A 133 1 13 HELIX 10 10 ALA A 133 PHE A 144 1 12 HELIX 11 11 ASP A 148 ASP A 170 1 23 HELIX 12 12 ASP A 170 LEU A 177 1 8 HELIX 13 13 PRO A 183 GLN A 189 1 7 HELIX 14 14 THR A 193 ALA A 199 1 7 HELIX 15 15 THR A 203 ARG A 225 1 23 HELIX 16 16 ARG A 226 LEU A 230 5 5 HELIX 17 17 PRO A 232 ARG A 255 1 24 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLY A 2 1555 1555 1.33 LINK C ARG A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N ALA A 64 1555 1555 1.33 LINK C PRO A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N GLU A 101 1555 1555 1.33 LINK C HIS A 167 N MSE A 168 1555 1555 1.33 LINK C MSE A 168 N GLN A 169 1555 1555 1.33 SITE 1 AC1 6 ASN A -1 ALA A 0 ARG A 16 ARG A 38 SITE 2 AC1 6 TYR A 42 HOH A 401 CRYST1 124.803 124.803 95.042 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008013 0.004626 0.000000 0.00000 SCALE2 0.000000 0.009252 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010522 0.00000