HEADER IMMUNE SYSTEM 02-OCT-12 4HDI TITLE CRYSTAL STRUCTURE OF 3E5 IGG3 FAB FROM MUS MUSCULUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: KAPPA LIGHT CHAIN VARIABLE REGION, ANTI-COLORECTAL COMPND 3 CARCINOMA LIGHT CHAIN; COMPND 4 CHAIN: L, A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: IG HEAVY CHAIN V REGION RF, IG GAMMA-3 CHAIN C REGION; COMPND 8 CHAIN: H, B; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: IGG1 ANTI-TS1 VL, GM16939; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS IGG, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.JANDA,E.ERYILMAZ,J.KIM,R.J.B.CORDERO,D.COWBURN,A.CASADEVALL REVDAT 3 20-SEP-23 4HDI 1 REMARK REVDAT 2 21-AUG-13 4HDI 1 JRNL REVDAT 1 17-APR-13 4HDI 0 JRNL AUTH E.ERYILMAZ,A.JANDA,J.KIM,R.J.CORDERO,D.COWBURN,A.CASADEVALL JRNL TITL GLOBAL STRUCTURES OF IGG ISOTYPES EXPRESSING IDENTICAL JRNL TITL 2 VARIABLE REGIONS. JRNL REF MOL.IMMUNOL. V. 56 588 2013 JRNL REFN ISSN 0161-5890 JRNL PMID 23911417 JRNL DOI 10.1016/J.MOLIMM.2013.06.006 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1770 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.51 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.46000 REMARK 3 B22 (A**2) : 5.02000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.526 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.295 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.230 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6842 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 6285 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9324 ; 1.430 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14498 ; 0.791 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 871 ; 7.133 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 262 ;35.444 ;23.588 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1087 ;16.680 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.197 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1065 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7733 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1549 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 219 REMARK 3 ORIGIN FOR THE GROUP (A): 0.0791 19.0407 29.6315 REMARK 3 T TENSOR REMARK 3 T11: 0.2903 T22: 0.0887 REMARK 3 T33: 0.1187 T12: -0.0172 REMARK 3 T13: -0.0476 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 3.3933 L22: 0.2605 REMARK 3 L33: 1.8057 L12: -0.0126 REMARK 3 L13: 2.1502 L23: 0.3018 REMARK 3 S TENSOR REMARK 3 S11: 0.3194 S12: -0.3126 S13: -0.2817 REMARK 3 S21: 0.0727 S22: -0.1129 S23: -0.0515 REMARK 3 S31: 0.4069 S32: -0.2975 S33: -0.2066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 220 REMARK 3 ORIGIN FOR THE GROUP (A): 7.4100 35.4129 28.5834 REMARK 3 T TENSOR REMARK 3 T11: 0.2298 T22: 0.0277 REMARK 3 T33: 0.0656 T12: 0.0392 REMARK 3 T13: 0.0107 T23: -0.0299 REMARK 3 L TENSOR REMARK 3 L11: 3.8984 L22: 0.6300 REMARK 3 L33: 1.2819 L12: 0.3996 REMARK 3 L13: 2.0018 L23: 0.5699 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: -0.1333 S13: 0.2998 REMARK 3 S21: -0.0068 S22: -0.0540 S23: -0.0302 REMARK 3 S31: 0.0494 S32: -0.0579 S33: 0.0786 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 217 REMARK 3 ORIGIN FOR THE GROUP (A): 15.6217 55.7602 5.5968 REMARK 3 T TENSOR REMARK 3 T11: 0.2331 T22: 0.0706 REMARK 3 T33: 0.1295 T12: 0.0396 REMARK 3 T13: -0.0436 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 1.8657 L22: 1.4624 REMARK 3 L33: 0.9654 L12: 0.6028 REMARK 3 L13: 0.4836 L23: 0.5829 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.1289 S13: 0.3075 REMARK 3 S21: 0.2134 S22: 0.0439 S23: -0.0150 REMARK 3 S31: -0.0499 S32: -0.1938 S33: -0.0093 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 220 REMARK 3 ORIGIN FOR THE GROUP (A): 25.3694 51.1234 -8.8642 REMARK 3 T TENSOR REMARK 3 T11: 0.1952 T22: 0.0745 REMARK 3 T33: 0.1595 T12: 0.0123 REMARK 3 T13: -0.0070 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.7033 L22: 0.7425 REMARK 3 L33: 0.8752 L12: -0.0090 REMARK 3 L13: 0.3042 L23: 0.3513 REMARK 3 S TENSOR REMARK 3 S11: -0.0196 S12: 0.2352 S13: 0.2481 REMARK 3 S21: -0.0117 S22: 0.1549 S23: -0.1953 REMARK 3 S31: 0.0101 S32: 0.0421 S33: -0.1354 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HDI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : DOUBLE SILICON(111) CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35380 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.449 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.53500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2H1P, 1T66 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.53500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.18150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.14450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.18150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.53500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.14450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 218 REMARK 465 CYS A 219 REMARK 465 ASP B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS L 174 CG CD CE NZ REMARK 470 LYS L 204 CG CD CE NZ REMARK 470 LYS H 13 CG CD CE NZ REMARK 470 GLU H 89 CG CD OE1 OE2 REMARK 470 ASP H 137 CG OD1 OD2 REMARK 470 SER H 141 OG REMARK 470 GLN H 198 CG CD OE1 NE2 REMARK 470 ASN A 162 CG OD1 ND2 REMARK 470 ASN B 31 CG OD1 ND2 REMARK 470 ASN B 54 CG OD1 ND2 REMARK 470 ASP B 73 CG OD1 OD2 REMARK 470 ASN B 74 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 32 -8.82 -58.14 REMARK 500 VAL L 56 -50.69 67.59 REMARK 500 ALA L 57 -0.33 -141.37 REMARK 500 ASN L 143 70.46 66.88 REMARK 500 SER L 176 19.05 56.58 REMARK 500 HIS L 203 -16.05 -149.07 REMARK 500 LYS L 204 2.99 87.75 REMARK 500 LEU H 14 133.70 -39.68 REMARK 500 LYS H 43 11.78 80.91 REMARK 500 ALA H 92 164.57 178.54 REMARK 500 CYS H 135 11.33 58.93 REMARK 500 ASN A 33 0.52 -63.76 REMARK 500 LYS A 55 60.05 33.51 REMARK 500 VAL A 56 -45.00 81.12 REMARK 500 ALA A 57 -15.26 -143.04 REMARK 500 GLU A 86 7.31 -69.99 REMARK 500 ASN A 143 62.70 62.61 REMARK 500 SER A 176 19.78 55.48 REMARK 500 ARG A 216 74.42 -54.47 REMARK 500 REMARK 500 REMARK: NULL DBREF 4HDI L 1 219 PDB 4HDI 4HDI 1 219 DBREF 4HDI A 1 219 PDB 4HDI 4HDI 1 219 DBREF 4HDI H 1 220 PDB 4HDI 4HDI 1 220 DBREF 4HDI B 1 220 PDB 4HDI 4HDI 1 220 SEQRES 1 L 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL ALA ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 PHE CYS SER GLN SER THR HIS VAL PRO TRP THR PHE GLY SEQRES 9 L 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 220 ASP VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 H 220 LEU GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 220 PHE THR PHE SER ASN TYR PHE MET SER TRP VAL ARG GLN SEQRES 4 H 220 THR PRO GLU LYS ARG LEU GLU LEU VAL ALA VAL ILE THR SEQRES 5 H 220 SER ASN GLY ASP ASN THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 H 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA GLN ASN THR SEQRES 7 H 220 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 H 220 ALA LEU TYR TYR CYS ALA ARG ARG ASP SER SER ALA SER SEQRES 9 H 220 LEU TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 H 220 VAL SER SER ALA THR THR THR ALA PRO SER VAL TYR PRO SEQRES 11 H 220 LEU VAL PRO GLY CYS SER ASP THR SER GLY SER SER VAL SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 220 VAL THR VAL LYS TRP ASN TYR GLY ALA LEU SER SER GLY SEQRES 14 H 220 VAL ARG THR VAL SER SER VAL LEU GLN SER GLY PHE TYR SEQRES 15 H 220 SER LEU SER SER LEU VAL THR VAL PRO SER SER THR TRP SEQRES 16 H 220 PRO SER GLN THR VAL ILE CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 220 SER LYS THR GLU LEU ILE LYS ARG ILE GLU PRO ARG SEQRES 1 A 219 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 A 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 A 219 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU HIS SEQRES 4 A 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 A 219 ILE TYR LYS VAL ALA ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 A 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 A 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 A 219 PHE CYS SER GLN SER THR HIS VAL PRO TRP THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 220 ASP VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 B 220 LEU GLY GLY SER LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 B 220 PHE THR PHE SER ASN TYR PHE MET SER TRP VAL ARG GLN SEQRES 4 B 220 THR PRO GLU LYS ARG LEU GLU LEU VAL ALA VAL ILE THR SEQRES 5 B 220 SER ASN GLY ASP ASN THR TYR TYR PRO ASP THR VAL LYS SEQRES 6 B 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA GLN ASN THR SEQRES 7 B 220 LEU TYR LEU GLN MET SER SER LEU LYS SER GLU ASP THR SEQRES 8 B 220 ALA LEU TYR TYR CYS ALA ARG ARG ASP SER SER ALA SER SEQRES 9 B 220 LEU TYR PHE ASP TYR TRP GLY GLN GLY THR THR LEU THR SEQRES 10 B 220 VAL SER SER ALA THR THR THR ALA PRO SER VAL TYR PRO SEQRES 11 B 220 LEU VAL PRO GLY CYS SER ASP THR SER GLY SER SER VAL SEQRES 12 B 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 B 220 VAL THR VAL LYS TRP ASN TYR GLY ALA LEU SER SER GLY SEQRES 14 B 220 VAL ARG THR VAL SER SER VAL LEU GLN SER GLY PHE TYR SEQRES 15 B 220 SER LEU SER SER LEU VAL THR VAL PRO SER SER THR TRP SEQRES 16 B 220 PRO SER GLN THR VAL ILE CYS ASN VAL ALA HIS PRO ALA SEQRES 17 B 220 SER LYS THR GLU LEU ILE LYS ARG ILE GLU PRO ARG FORMUL 5 HOH *65(H2 O) HELIX 1 1 GLU L 84 LEU L 88 5 5 HELIX 2 2 SER L 126 SER L 132 1 7 HELIX 3 3 LYS L 188 GLU L 192 1 5 HELIX 4 4 ASN L 217 CYS L 219 5 3 HELIX 5 5 THR H 28 TYR H 32 5 5 HELIX 6 6 LYS H 87 THR H 91 5 5 HELIX 7 7 TYR H 163 ALA H 165 5 3 HELIX 8 8 PRO H 191 TRP H 195 5 5 HELIX 9 9 PRO H 207 LYS H 210 5 4 HELIX 10 10 GLU A 84 LEU A 88 5 5 HELIX 11 11 SER A 126 SER A 132 1 7 HELIX 12 12 LYS A 188 ARG A 193 1 6 HELIX 13 13 THR B 28 TYR B 32 5 5 HELIX 14 14 PRO B 61 LYS B 65 5 5 HELIX 15 15 LYS B 87 THR B 91 5 5 HELIX 16 16 TYR B 163 ALA B 165 5 3 HELIX 17 17 PRO B 207 LYS B 210 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 O PHE L 76 N CYS L 23 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 72 O ASP L 75 SHEET 1 B 6 SER L 10 SER L 14 0 SHEET 2 B 6 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 B 6 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 B 6 LEU L 38 GLN L 43 -1 N HIS L 39 O SER L 94 SHEET 5 B 6 PRO L 49 TYR L 54 -1 O ILE L 53 N TRP L 40 SHEET 6 B 6 ASN L 58 ARG L 59 -1 O ASN L 58 N TYR L 54 SHEET 1 C 4 SER L 10 SER L 14 0 SHEET 2 C 4 THR L 107 LYS L 112 1 O LYS L 108 N LEU L 11 SHEET 3 C 4 GLY L 89 GLN L 95 -1 N GLY L 89 O LEU L 109 SHEET 4 C 4 THR L 102 PHE L 103 -1 O THR L 102 N GLN L 95 SHEET 1 D 4 THR L 119 PHE L 123 0 SHEET 2 D 4 GLY L 134 PHE L 144 -1 O PHE L 140 N SER L 121 SHEET 3 D 4 TYR L 178 THR L 187 -1 O LEU L 184 N VAL L 137 SHEET 4 D 4 VAL L 164 TRP L 168 -1 N LEU L 165 O THR L 183 SHEET 1 E 4 SER L 158 ARG L 160 0 SHEET 2 E 4 ASN L 150 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 E 4 SER L 196 THR L 202 -1 O THR L 202 N ASN L 150 SHEET 4 E 4 ILE L 210 ASN L 215 -1 O LYS L 212 N CYS L 199 SHEET 1 F 4 LYS H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 F 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 F 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 G 6 GLY H 10 VAL H 12 0 SHEET 2 G 6 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 G 6 ALA H 92 ARG H 99 -1 N TYR H 94 O THR H 114 SHEET 4 G 6 MET H 34 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 THR H 58 TYR H 59 -1 O TYR H 59 N VAL H 50 SHEET 1 H 4 GLY H 10 VAL H 12 0 SHEET 2 H 4 THR H 114 VAL H 118 1 O THR H 117 N GLY H 10 SHEET 3 H 4 ALA H 92 ARG H 99 -1 N TYR H 94 O THR H 114 SHEET 4 H 4 PHE H 107 TRP H 110 -1 O TYR H 109 N ARG H 98 SHEET 1 I 4 SER H 127 LEU H 131 0 SHEET 2 I 4 VAL H 143 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 I 4 PHE H 181 VAL H 190 -1 O VAL H 188 N LEU H 145 SHEET 4 I 4 ARG H 171 THR H 172 -1 N ARG H 171 O LEU H 187 SHEET 1 J 4 SER H 127 LEU H 131 0 SHEET 2 J 4 VAL H 143 TYR H 152 -1 O GLY H 146 N LEU H 131 SHEET 3 J 4 PHE H 181 VAL H 190 -1 O VAL H 188 N LEU H 145 SHEET 4 J 4 VAL H 176 GLN H 178 -1 N VAL H 176 O SER H 183 SHEET 1 K 3 THR H 158 TRP H 161 0 SHEET 2 K 3 VAL H 200 HIS H 206 -1 O ASN H 203 N LYS H 160 SHEET 3 K 3 THR H 211 ILE H 217 -1 O ILE H 217 N VAL H 200 SHEET 1 L 4 MET A 4 THR A 7 0 SHEET 2 L 4 ALA A 19 SER A 25 -1 O SER A 22 N THR A 7 SHEET 3 L 4 ASP A 75 ILE A 80 -1 O PHE A 76 N CYS A 23 SHEET 4 L 4 PHE A 67 SER A 72 -1 N SER A 68 O LYS A 79 SHEET 1 M 6 SER A 10 SER A 14 0 SHEET 2 M 6 THR A 107 LYS A 112 1 O GLU A 110 N VAL A 13 SHEET 3 M 6 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 SHEET 4 M 6 LEU A 38 GLN A 43 -1 N GLN A 43 O VAL A 90 SHEET 5 M 6 PRO A 49 TYR A 54 -1 O LYS A 50 N LEU A 42 SHEET 6 M 6 ASN A 58 ARG A 59 -1 O ASN A 58 N TYR A 54 SHEET 1 N 4 SER A 10 SER A 14 0 SHEET 2 N 4 THR A 107 LYS A 112 1 O GLU A 110 N VAL A 13 SHEET 3 N 4 GLY A 89 GLN A 95 -1 N TYR A 91 O THR A 107 SHEET 4 N 4 THR A 102 PHE A 103 -1 O THR A 102 N GLN A 95 SHEET 1 O 4 THR A 119 PHE A 123 0 SHEET 2 O 4 GLY A 134 PHE A 144 -1 O PHE A 140 N SER A 121 SHEET 3 O 4 TYR A 178 THR A 187 -1 O MET A 180 N LEU A 141 SHEET 4 O 4 VAL A 164 TRP A 168 -1 N LEU A 165 O THR A 183 SHEET 1 P 4 SER A 158 ARG A 160 0 SHEET 2 P 4 ASN A 150 ILE A 155 -1 N ILE A 155 O SER A 158 SHEET 3 P 4 SER A 196 THR A 202 -1 O THR A 202 N ASN A 150 SHEET 4 P 4 ILE A 210 ASN A 215 -1 O ILE A 210 N ALA A 201 SHEET 1 Q 4 LYS B 3 SER B 7 0 SHEET 2 Q 4 LEU B 18 SER B 25 -1 O ALA B 23 N VAL B 5 SHEET 3 Q 4 THR B 78 MET B 83 -1 O MET B 83 N LEU B 18 SHEET 4 Q 4 THR B 69 ASP B 73 -1 N THR B 69 O GLN B 82 SHEET 1 R 6 LEU B 11 VAL B 12 0 SHEET 2 R 6 THR B 114 VAL B 118 1 O THR B 117 N VAL B 12 SHEET 3 R 6 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 114 SHEET 4 R 6 MET B 34 GLN B 39 -1 N GLN B 39 O LEU B 93 SHEET 5 R 6 LEU B 45 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 R 6 THR B 58 TYR B 59 -1 O TYR B 59 N VAL B 50 SHEET 1 S 4 LEU B 11 VAL B 12 0 SHEET 2 S 4 THR B 114 VAL B 118 1 O THR B 117 N VAL B 12 SHEET 3 S 4 ALA B 92 ARG B 99 -1 N TYR B 94 O THR B 114 SHEET 4 S 4 PHE B 107 TRP B 110 -1 O TYR B 109 N ARG B 98 SHEET 1 T 4 SER B 127 LEU B 131 0 SHEET 2 T 4 SER B 142 TYR B 152 -1 O LEU B 148 N TYR B 129 SHEET 3 T 4 PHE B 181 PRO B 191 -1 O LEU B 184 N VAL B 149 SHEET 4 T 4 VAL B 170 THR B 172 -1 N ARG B 171 O LEU B 187 SHEET 1 U 4 SER B 127 LEU B 131 0 SHEET 2 U 4 SER B 142 TYR B 152 -1 O LEU B 148 N TYR B 129 SHEET 3 U 4 PHE B 181 PRO B 191 -1 O LEU B 184 N VAL B 149 SHEET 4 U 4 VAL B 176 GLN B 178 -1 N GLN B 178 O PHE B 181 SHEET 1 V 3 THR B 158 TRP B 161 0 SHEET 2 V 3 ILE B 201 HIS B 206 -1 O ASN B 203 N LYS B 160 SHEET 3 V 3 THR B 211 ARG B 216 -1 O LEU B 213 N VAL B 204 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.08 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.04 SSBOND 3 CYS L 219 CYS H 135 1555 1555 2.04 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.11 SSBOND 5 CYS H 147 CYS H 202 1555 1555 2.06 SSBOND 6 CYS A 23 CYS A 93 1555 1555 2.07 SSBOND 7 CYS A 139 CYS A 199 1555 1555 2.06 SSBOND 8 CYS B 22 CYS B 96 1555 1555 2.05 SSBOND 9 CYS B 147 CYS B 202 1555 1555 2.02 CISPEP 1 THR L 7 PRO L 8 0 -4.99 CISPEP 2 VAL L 99 PRO L 100 0 11.25 CISPEP 3 TYR L 145 PRO L 146 0 4.32 CISPEP 4 PHE H 153 PRO H 154 0 -11.14 CISPEP 5 GLU H 155 PRO H 156 0 10.99 CISPEP 6 TRP H 195 PRO H 196 0 -3.91 CISPEP 7 THR A 7 PRO A 8 0 -4.18 CISPEP 8 VAL A 99 PRO A 100 0 -1.94 CISPEP 9 TYR A 145 PRO A 146 0 -0.03 CISPEP 10 PHE B 153 PRO B 154 0 -6.33 CISPEP 11 GLU B 155 PRO B 156 0 4.64 CISPEP 12 TRP B 195 PRO B 196 0 3.15 CRYST1 67.070 98.289 142.363 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014910 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010174 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007024 0.00000