HEADER TRANSFERASE/TRANSFERASE INHIBITOR 02-OCT-12 4HDK TITLE CRYSTAL STRUCTURE OF ARSAB IN COMPLEX WITH PHLOROGLUCINOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARSA; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.21; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ARSB; COMPND 8 CHAIN: B; COMPND 9 EC: 2.4.2.21; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 3 ORGANISM_TAXID: 2378; SOURCE 4 GENE: ARSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PARSAB22; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SPOROMUSA OVATA; SOURCE 12 ORGANISM_TAXID: 2378; SOURCE 13 GENE: ARSB; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: JE13607; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PARSAB22 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT REVDAT 3 28-FEB-24 4HDK 1 REMARK SEQADV REVDAT 2 30-JAN-13 4HDK 1 JRNL REVDAT 1 24-OCT-12 4HDK 0 JRNL AUTH S.A.NEWMISTER,C.H.CHAN,J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL STRUCTURAL INSIGHTS INTO THE FUNCTION OF THE NICOTINATE JRNL TITL 2 MONONUCLEOTIDE:PHENOL/P-CRESOL PHOSPHORIBOSYLTRANSFERASE JRNL TITL 3 (ARSAB) ENZYME FROM SPOROMUSA OVATA. JRNL REF BIOCHEMISTRY V. 51 8571 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23039029 JRNL DOI 10.1021/BI301142H REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 100357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6363 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 501 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.48000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -1.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.081 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.054 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5013 ; 0.025 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6821 ; 2.483 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 699 ; 5.900 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 179 ;36.998 ;24.469 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 856 ;14.841 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;18.424 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.281 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3689 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 4 REMARK 4 4HDK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100657 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.900 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.39900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% MEPEG5000, 100 MM MOPS, 20 MM REMARK 280 NACL, 10 MM PHLOROGLUCINOL, 12% ETHYLENE GLYCOL , PH 7.1, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.19400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.68250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.19400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.38900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.68250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23650 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 SER A 77 REMARK 465 ALA A 78 REMARK 465 TYR A 79 REMARK 465 ASP A 209 REMARK 465 SER A 210 REMARK 465 ARG A 211 REMARK 465 ARG A 344 REMARK 465 GLY A 345 REMARK 465 GLY A 346 REMARK 465 LYS A 347 REMARK 465 ALA A 348 REMARK 465 ASN A 349 REMARK 465 ALA A 350 REMARK 465 MET B 1 REMARK 465 MET B 71 REMARK 465 ALA B 72 REMARK 465 THR B 73 REMARK 465 ASP B 74 REMARK 465 GLN B 75 REMARK 465 GLN B 76 REMARK 465 ALA B 335 REMARK 465 GLN B 336 REMARK 465 ASP B 337 REMARK 465 GLY B 338 REMARK 465 PRO B 339 REMARK 465 GLY B 340 REMARK 465 ALA B 341 REMARK 465 LEU B 342 REMARK 465 ARG B 343 REMARK 465 GLN B 344 REMARK 465 SER B 345 REMARK 465 LYS B 346 REMARK 465 ASP B 347 REMARK 465 VAL B 348 REMARK 465 ARG B 349 REMARK 465 ASP B 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 104 O HOH B 694 1.98 REMARK 500 O HOH B 654 O HOH B 780 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 130 N ARG A 130 CA -0.125 REMARK 500 ASP A 159 N ASP A 159 CA -0.127 REMARK 500 GLU A 176 CD GLU A 176 OE2 -0.083 REMARK 500 THR A 270 N THR A 270 CA -0.145 REMARK 500 GLU A 312 CD GLU A 312 OE2 -0.077 REMARK 500 GLU A 319 CD GLU A 319 OE2 -0.075 REMARK 500 GLU B 18 CD GLU B 18 OE2 0.082 REMARK 500 GLU B 159 CD GLU B 159 OE2 -0.069 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 130 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG A 259 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 307 CA - C - N ANGL. DEV. = 17.3 DEGREES REMARK 500 LEU A 307 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 LEU A 307 O - C - N ANGL. DEV. = -16.6 DEGREES REMARK 500 ARG B 104 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 154 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 PRO B 193 C - N - CD ANGL. DEV. = -15.0 DEGREES REMARK 500 ARG B 243 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 243 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ASP B 290 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 MET B 299 CG - SD - CE ANGL. DEV. = -10.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 93 -68.51 -100.93 REMARK 500 ASP A 265 -121.17 -137.58 REMARK 500 SER A 290 -86.69 -126.74 REMARK 500 ALA A 309 161.04 97.00 REMARK 500 HIS B 35 -112.45 45.99 REMARK 500 ASP B 249 -111.40 -103.87 REMARK 500 SER B 274 -85.79 -128.93 REMARK 500 ALA B 281 -4.56 79.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13X A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 13X B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HDM RELATED DB: PDB REMARK 900 RELATED ID: 4HDR RELATED DB: PDB REMARK 900 RELATED ID: 4HDS RELATED DB: PDB REMARK 900 RELATED ID: 4HDN RELATED DB: PDB DBREF 4HDK A 1 350 UNP F6MZ55 F6MZ55_9FIRM 5 350 DBREF 4HDK B 1 350 UNP F6MZ56 F6MZ56_9FIRM 1 350 SEQADV 4HDK GLY A -1 UNP F6MZ55 EXPRESSION TAG SEQADV 4HDK GLY A 0 UNP F6MZ55 EXPRESSION TAG SEQRES 1 A 348 GLY GLY MET SER LEU LEU GLN ALA THR VAL ALA LYS ILE SEQRES 2 A 348 MET ARG PRO ASP THR VAL ILE LYS ASP GLN VAL LYS THR SEQRES 3 A 348 LYS LEU ALA GLY VAL LEU GLN SER ALA GLY SER LEU GLY SEQRES 4 A 348 ARG LEU GLU ASP MET VAL GLU GLN TYR ALA GLY ILE THR SEQRES 5 A 348 GLY GLU LEU ASN PRO ALA LEU PRO LYS PRO CYS MET VAL SEQRES 6 A 348 VAL ALA SER ALA ASP HIS GLY VAL ALA ARG ARG VAL VAL SEQRES 7 A 348 SER ALA TYR PRO ILE GLU THR THR ILE HIS MET THR ALA SEQRES 8 A 348 ASN TYR LEU ILE SER GLN GLY ALA SER ALA ASN ALA PHE SEQRES 9 A 348 ALA ASN PHE CYS GLY ALA ASP MET VAL VAL VAL ASP MET SEQRES 10 A 348 GLY VAL ALA GLY ASP LEU SER TYR VAL PRO GLY LEU TRP SEQRES 11 A 348 HIS ARG LYS ILE ALA TYR GLY THR GLN ASP PHE THR GLU SEQRES 12 A 348 GLY PRO ALA MET THR ARG GLU GLN ALA ILE GLN ALA VAL SEQRES 13 A 348 GLU THR GLY ILE ASP ILE VAL ASN ASP ARG VAL LYS HIS SEQRES 14 A 348 GLY ASN ARG CYS PHE CYS LEU GLY GLU MET GLY ILE GLY SEQRES 15 A 348 ASN THR THR SER SER ALA THR ILE VAL GLY ALA PHE THR SEQRES 16 A 348 GLY LEU ALA PRO GLU LYS VAL THR GLY ARG GLY THR GLY SEQRES 17 A 348 ILE SER ASP SER ARG LEU LYS THR LYS MET GLU ILE VAL SEQRES 18 A 348 GLY ARG ALA LEU ALA VAL ASN LYS PRO ASN PRO GLN ASP SEQRES 19 A 348 GLY LEU ASP VAL LEU ALA LYS VAL GLY GLY PHE GLU LEU SEQRES 20 A 348 GLY ALA LEU ALA GLY VAL ILE LEU GLY SER ALA ALA ASN SEQRES 21 A 348 ARG CYS ALA VAL VAL ILE ASP GLY LEU ASN THR THR ALA SEQRES 22 A 348 ALA ALA LEU ILE ALA ASN VAL ILE HIS PRO LEU SER LYS SEQRES 23 A 348 GLU TYR MET PHE ALA SER HIS LEU SER GLY GLU PRO ALA SEQRES 24 A 348 HIS SER ILE ALA LEU ARG GLN LEU GLN LEU GLU ALA CYS SEQRES 25 A 348 LEU GLU LEU GLY VAL ARG LEU GLY GLU GLY ILE GLY ALA SEQRES 26 A 348 SER MET VAL VAL ASP MET LEU TYR VAL ALA ILE LYS LEU SEQRES 27 A 348 LEU ASN ASN ARG GLY GLY LYS ALA ASN ALA SEQRES 1 B 350 MET LEU GLU GLU LEU ILE ALA ALA ILE LYS PRO LEU ASP SEQRES 2 B 350 SER ILE ALA MET GLU GLN CYS GLN ARG ARG VAL ASP ASN SEQRES 3 B 350 LEU THR LYS PRO LEU ASN SER LEU HIS SER PHE GLU HIS SEQRES 4 B 350 ILE ALA CYS LYS LEU ALA GLY ILE SER GLY ASN PRO ARG SEQRES 5 B 350 PRO ARG ALA LEU GLU LYS SER ILE ILE ILE MET ALA ALA SEQRES 6 B 350 ASP ASN GLY VAL ALA MET ALA THR ASP GLN GLN GLN MET SEQRES 7 B 350 THR THR ALA ALA ARG LEU THR GLY PHE CYS GLN GLY GLN SEQRES 8 B 350 ALA PRO ILE GLN VAL PHE ALA ALA HIS VAL GLN ALA ARG SEQRES 9 B 350 LEU ILE MET VAL ASP ILE GLY VAL ALA ALA ASP LEU PRO SEQRES 10 B 350 HIS SER PRO ALA VAL CYS ARG LYS LYS LEU ALA TYR GLY SEQRES 11 B 350 SER ARG ASN SER THR GLU GLY PRO ALA MET THR ARG GLN SEQRES 12 B 350 GLN ALA ILE GLN ALA ILE GLU VAL GLY VAL ARG ILE ALA SEQRES 13 B 350 GLN ALA GLU ILE ALA ARG GLY CYS GLN VAL ILE GLY LEU SEQRES 14 B 350 GLY GLU MET GLY LEU GLY GLY LEU ALA ALA ALA MET ALA SEQRES 15 B 350 ILE VAL ALA CYS CYS HIS GLY GLN PRO LEU PRO GLY LEU SEQRES 16 B 350 ALA GLY ARG GLU ALA GLU LEU VAL ASN THR ALA ILE ALA SEQRES 17 B 350 VAL ASN ARG PRO ASN ALA ALA ASP PRO LEU ASP ILE LEU SEQRES 18 B 350 THR LYS VAL GLY GLY LEU ALA ILE ALA GLY LEU VAL GLY SEQRES 19 B 350 VAL ILE LEU GLY ALA ALA ALA GLY ARG ALA ALA VAL VAL SEQRES 20 B 350 LEU ASP GLY LEU ALA THR SER THR ALA ALA LEU ILE ALA SEQRES 21 B 350 ILE ASN LEU VAL PRO ASP VAL LYS PRO TYR LEU ILE GLY SEQRES 22 B 350 SER HIS PHE ALA ALA GLU PRO ALA HIS GLU THR ALA LEU SEQRES 23 B 350 ALA LEU LEU ASP VAL PRO ALA TYR LEU GLN LEU LYS MET SEQRES 24 B 350 ASN LEU GLY GLU GLY THR GLY ALA ALA LEU GLY MET SER SEQRES 25 B 350 VAL ILE ASN ALA THR LEU HIS MET LEU ASN ASP MET LYS SEQRES 26 B 350 THR PHE GLY GLU ALA GLU VAL ALA VAL ALA GLN ASP GLY SEQRES 27 B 350 PRO GLY ALA LEU ARG GLN SER LYS ASP VAL ARG ASP HET CL A 701 1 HET 13X A 702 9 HET EDO A 703 4 HET EDO B 401 4 HET 13X B 402 9 HET EDO B 403 4 HETNAM CL CHLORIDE ION HETNAM 13X BENZENE-1,3,5-TRIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN 13X PHLOROGLUCINOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 CL CL 1- FORMUL 4 13X 2(C6 H6 O3) FORMUL 5 EDO 3(C2 H6 O2) FORMUL 9 HOH *501(H2 O) HELIX 1 1 SER A 2 ILE A 11 1 10 HELIX 2 2 ASP A 15 LEU A 30 1 16 HELIX 3 3 GLY A 37 GLY A 51 1 15 HELIX 4 4 HIS A 69 VAL A 75 5 7 HELIX 5 5 GLU A 82 ILE A 93 1 12 HELIX 6 6 ALA A 97 CYS A 106 1 10 HELIX 7 7 THR A 146 LYS A 166 1 21 HELIX 8 8 GLY A 180 GLY A 194 1 15 HELIX 9 9 ALA A 196 GLY A 202 1 7 HELIX 10 10 THR A 214 LYS A 227 1 14 HELIX 11 11 ASP A 232 GLY A 241 1 10 HELIX 12 12 GLY A 242 ASN A 258 1 17 HELIX 13 13 GLY A 266 HIS A 280 1 15 HELIX 14 14 LEU A 282 GLU A 285 5 4 HELIX 15 15 GLU A 295 LEU A 305 1 11 HELIX 16 16 GLY A 320 ASN A 342 1 19 HELIX 17 17 GLU B 3 ALA B 8 1 6 HELIX 18 18 ASP B 13 LEU B 27 1 15 HELIX 19 19 HIS B 35 GLY B 49 1 15 HELIX 20 20 THR B 79 GLN B 89 1 11 HELIX 21 21 ALA B 92 GLN B 102 1 11 HELIX 22 22 THR B 141 ARG B 162 1 22 HELIX 23 23 GLY B 175 GLY B 189 1 15 HELIX 24 24 ALA B 196 ARG B 211 1 16 HELIX 25 25 ASP B 216 GLY B 225 1 10 HELIX 26 26 GLY B 226 GLY B 242 1 17 HELIX 27 27 GLY B 250 VAL B 264 1 15 HELIX 28 28 PRO B 265 PRO B 269 5 5 HELIX 29 29 ALA B 281 ASP B 290 1 10 HELIX 30 30 GLY B 304 MET B 324 1 21 HELIX 31 31 THR B 326 VAL B 332 1 7 SHEET 1 A 6 TRP A 128 HIS A 129 0 SHEET 2 A 6 ASP A 109 GLY A 116 1 N ASP A 114 O TRP A 128 SHEET 3 A 6 LYS A 59 ALA A 67 1 N MET A 62 O ASP A 109 SHEET 4 A 6 ASN A 169 MET A 177 1 O CYS A 173 N VAL A 63 SHEET 5 A 6 ALA A 261 VAL A 263 1 O VAL A 263 N PHE A 172 SHEET 6 A 6 MET A 287 PHE A 288 1 O PHE A 288 N VAL A 262 SHEET 1 B 6 VAL B 122 ARG B 124 0 SHEET 2 B 6 ALA B 103 GLY B 111 1 N MET B 107 O CYS B 123 SHEET 3 B 6 LYS B 58 ALA B 65 1 N ILE B 60 O ARG B 104 SHEET 4 B 6 VAL B 166 MET B 172 1 O GLY B 168 N SER B 59 SHEET 5 B 6 ALA B 245 VAL B 247 1 O ALA B 245 N ILE B 167 SHEET 6 B 6 LEU B 271 ILE B 272 1 O ILE B 272 N VAL B 246 CISPEP 1 PRO B 193 GLY B 194 0 -10.12 SITE 1 AC1 3 HIS A 129 ARG A 130 ARG B 132 SITE 1 AC2 10 MET A 87 MET A 177 GLU A 319 HOH A 871 SITE 2 AC2 10 HOH A 878 THR B 28 LYS B 29 PRO B 30 SITE 3 AC2 10 PHE B 327 HOH B 507 SITE 1 AC3 6 GLY A 178 GLY A 180 ASN A 181 THR A 182 SITE 2 AC3 6 HOH A 847 HOH A 916 SITE 1 AC4 4 ASN A 104 PHE A 105 HIS B 319 HOH B 501 SITE 1 AC5 7 VAL A 29 ALA A 33 ARG B 83 GLY B 86 SITE 2 AC5 7 ALA B 92 PRO B 93 GLU B 303 SITE 1 AC6 6 PHE A 105 ASP A 328 HIS B 100 SER B 312 SITE 2 AC6 6 ASN B 315 HOH B 550 CRYST1 52.778 77.365 152.388 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018947 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006562 0.00000