data_4HF7 # _entry.id 4HF7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HF7 pdb_00004hf7 10.2210/pdb4hf7/pdb RCSB RCSB075390 ? ? WWPDB D_1000075390 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417738 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4HF7 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-10-05 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a GDSL-like lipase (BT0569) from Bacteroides thetaiotaomicron VPI-5482 at 1.77 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4HF7 _cell.length_a 51.201 _cell.length_b 110.680 _cell.length_c 88.776 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HF7 _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative acylhydrolase' 23689.252 1 ? ? 'UNP residues 29-236' ? 2 water nat water 18.015 259 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GQKHEFANYKRYATENAALAQPVKKEKRVVF(MSE)GN(OSE)ITEGWVRTHPDFFKTNGYIGRGISGQTSYQFLLRFRE DVINLSPALVVINAGTNDVAENTGAYNEDYTFGNIAS(MSE)AELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSL NARIEAYAKANKIPFVNYYQP(MSE)VVGENKALNPQYTKDGVHPTGEGYDI(MSE)EALIKQAIEKAL ; _entity_poly.pdbx_seq_one_letter_code_can ;GQKHEFANYKRYATENAALAQPVKKEKRVVFMGNSITEGWVRTHPDFFKTNGYIGRGISGQTSYQFLLRFREDVINLSPA LVVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANK IPFVNYYQPMVVGENKALNPQYTKDGVHPTGEGYDIMEALIKQAIEKAL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417738 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLN n 1 3 LYS n 1 4 HIS n 1 5 GLU n 1 6 PHE n 1 7 ALA n 1 8 ASN n 1 9 TYR n 1 10 LYS n 1 11 ARG n 1 12 TYR n 1 13 ALA n 1 14 THR n 1 15 GLU n 1 16 ASN n 1 17 ALA n 1 18 ALA n 1 19 LEU n 1 20 ALA n 1 21 GLN n 1 22 PRO n 1 23 VAL n 1 24 LYS n 1 25 LYS n 1 26 GLU n 1 27 LYS n 1 28 ARG n 1 29 VAL n 1 30 VAL n 1 31 PHE n 1 32 MSE n 1 33 GLY n 1 34 ASN n 1 35 OSE n 1 36 ILE n 1 37 THR n 1 38 GLU n 1 39 GLY n 1 40 TRP n 1 41 VAL n 1 42 ARG n 1 43 THR n 1 44 HIS n 1 45 PRO n 1 46 ASP n 1 47 PHE n 1 48 PHE n 1 49 LYS n 1 50 THR n 1 51 ASN n 1 52 GLY n 1 53 TYR n 1 54 ILE n 1 55 GLY n 1 56 ARG n 1 57 GLY n 1 58 ILE n 1 59 SER n 1 60 GLY n 1 61 GLN n 1 62 THR n 1 63 SER n 1 64 TYR n 1 65 GLN n 1 66 PHE n 1 67 LEU n 1 68 LEU n 1 69 ARG n 1 70 PHE n 1 71 ARG n 1 72 GLU n 1 73 ASP n 1 74 VAL n 1 75 ILE n 1 76 ASN n 1 77 LEU n 1 78 SER n 1 79 PRO n 1 80 ALA n 1 81 LEU n 1 82 VAL n 1 83 VAL n 1 84 ILE n 1 85 ASN n 1 86 ALA n 1 87 GLY n 1 88 THR n 1 89 ASN n 1 90 ASP n 1 91 VAL n 1 92 ALA n 1 93 GLU n 1 94 ASN n 1 95 THR n 1 96 GLY n 1 97 ALA n 1 98 TYR n 1 99 ASN n 1 100 GLU n 1 101 ASP n 1 102 TYR n 1 103 THR n 1 104 PHE n 1 105 GLY n 1 106 ASN n 1 107 ILE n 1 108 ALA n 1 109 SER n 1 110 MSE n 1 111 ALA n 1 112 GLU n 1 113 LEU n 1 114 ALA n 1 115 LYS n 1 116 ALA n 1 117 ASN n 1 118 LYS n 1 119 ILE n 1 120 LYS n 1 121 VAL n 1 122 ILE n 1 123 LEU n 1 124 THR n 1 125 SER n 1 126 VAL n 1 127 LEU n 1 128 PRO n 1 129 ALA n 1 130 ALA n 1 131 GLU n 1 132 PHE n 1 133 PRO n 1 134 TRP n 1 135 ARG n 1 136 ARG n 1 137 GLU n 1 138 ILE n 1 139 LYS n 1 140 ASP n 1 141 ALA n 1 142 PRO n 1 143 GLN n 1 144 LYS n 1 145 ILE n 1 146 GLN n 1 147 SER n 1 148 LEU n 1 149 ASN n 1 150 ALA n 1 151 ARG n 1 152 ILE n 1 153 GLU n 1 154 ALA n 1 155 TYR n 1 156 ALA n 1 157 LYS n 1 158 ALA n 1 159 ASN n 1 160 LYS n 1 161 ILE n 1 162 PRO n 1 163 PHE n 1 164 VAL n 1 165 ASN n 1 166 TYR n 1 167 TYR n 1 168 GLN n 1 169 PRO n 1 170 MSE n 1 171 VAL n 1 172 VAL n 1 173 GLY n 1 174 GLU n 1 175 ASN n 1 176 LYS n 1 177 ALA n 1 178 LEU n 1 179 ASN n 1 180 PRO n 1 181 GLN n 1 182 TYR n 1 183 THR n 1 184 LYS n 1 185 ASP n 1 186 GLY n 1 187 VAL n 1 188 HIS n 1 189 PRO n 1 190 THR n 1 191 GLY n 1 192 GLU n 1 193 GLY n 1 194 TYR n 1 195 ASP n 1 196 ILE n 1 197 MSE n 1 198 GLU n 1 199 ALA n 1 200 LEU n 1 201 ILE n 1 202 LYS n 1 203 GLN n 1 204 ALA n 1 205 ILE n 1 206 GLU n 1 207 LYS n 1 208 ALA n 1 209 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BT_0569, NP_809482.1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides thetaiotaomicron' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 226186 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q8AA96_BACTN _struct_ref.pdbx_db_accession Q8AA96 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QKHEFANYKRYATENAALAQPVKKEKRVVFMGNSITEGWVRTHPDFFKTNGYIGRGISGQTSYQFLLRFREDVINLSPAL VVINAGTNDVAENTGAYNEDYTFGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKI PFVNYYQPMVVGENKALNPQYTKDGVHPTGEGYDIMEALIKQAIEKAL ; _struct_ref.pdbx_align_begin 29 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4HF7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 209 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q8AA96 _struct_ref_seq.db_align_beg 29 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 236 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 29 _struct_ref_seq.pdbx_auth_seq_align_end 236 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4HF7 _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code Q8AA96 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 OSE 'L-peptide linking' n O-SULFO-L-SERINE ? 'C3 H7 N O6 S' 185.156 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4HF7 # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 53.67 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.pdbx_details '2.40M ammonium sulfate, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp 277 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.pH 9.0 # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2012-08-01 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97876 1.0 3 0.97932 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97876,0.97932 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4HF7 _reflns.d_resolution_high 1.77 _reflns.d_resolution_low 46.470 _reflns.number_obs 24579 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_netI_over_sigmaI 9.270 _reflns.percent_possible_obs 98.200 _reflns.B_iso_Wilson_estimate 15.590 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.770 1.830 7860 ? 2300 0.599 2.3 ? ? ? ? ? 98.500 1 1 1.830 1.910 8898 ? 2654 0.460 3.0 ? ? ? ? ? 98.300 2 1 1.910 1.990 7217 ? 2229 0.326 4.0 ? ? ? ? ? 98.400 3 1 1.990 2.100 7966 ? 2518 0.221 5.4 ? ? ? ? ? 97.000 4 1 2.100 2.230 8248 ? 2415 0.186 6.7 ? ? ? ? ? 98.800 5 1 2.230 2.400 8135 ? 2433 0.147 8.2 ? ? ? ? ? 98.500 6 1 2.400 2.640 7744 ? 2457 0.117 9.4 ? ? ? ? ? 98.500 7 1 2.640 3.020 8501 ? 2487 0.086 12.9 ? ? ? ? ? 98.800 8 1 3.020 3.810 8032 ? 2514 0.056 18.0 ? ? ? ? ? 98.200 9 1 3.810 46.470 8111 ? 2580 0.044 21.5 ? ? ? ? ? 97.000 10 1 # _refine.ls_percent_reflns_R_free 5.0400 _refine.overall_SU_B ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_R_Free_selection_details RANDOM _refine.overall_FOM_free_R_set ? _refine.pdbx_data_cutoff_low_absF ? _refine.entry_id 4HF7 _refine.aniso_B[2][3] 0.0000 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_ML ? _refine.pdbx_ls_sigma_I ? _refine.aniso_B[1][3] 0.0000 _refine.pdbx_stereochemistry_target_values ? _refine.aniso_B[3][3] -9.5344 _refine.occupancy_max 1.000 _refine.ls_number_restraints ? _refine.aniso_B[1][1] 4.9273 _refine.pdbx_overall_ESU_R ? _refine.ls_R_factor_obs 0.1973 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_starting_model ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_method_to_determine_struct MAD _refine.solvent_model_param_ksol ? _refine.pdbx_solvent_shrinkage_radii ? _refine.correlation_coeff_Fo_to_Fc 0.8857 _refine.ls_number_reflns_R_free 1236 _refine.correlation_coeff_Fo_to_Fc_free 0.8733 _refine.pdbx_ls_sigma_F 0.000 _refine.ls_percent_reflns_obs 98.2200 _refine.ls_R_factor_R_work 0.1962 _refine.overall_SU_R_free ? _refine.ls_d_res_high 1.7700 _refine.pdbx_overall_ESU_R_Free ? _refine.B_iso_min 5.540 _refine.occupancy_min 0.500 _refine.B_iso_mean 18.1164 _refine.pdbx_stereochem_target_val_spec_case ? _refine.ls_R_factor_all ? _refine.aniso_B[2][2] 4.6070 _refine.B_iso_max 75.930 _refine.ls_d_res_low 46.470 _refine.pdbx_overall_phase_error ? _refine.solvent_model_details ? _refine.aniso_B[1][2] 0.0000 _refine.ls_R_factor_R_free 0.2168 _refine.ls_R_factor_R_free_error ? _refine.ls_number_reflns_obs 24538 _refine.overall_FOM_work_R_set ? _refine.ls_number_parameters ? _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. EXPERIMENTAL (MAD) PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. RESIDUE SER62 WAS MODELED AS A O-SULFO-L-SERINE (OSE) BASED ON THE FIT TO DENSITY AND PRESENCE OF 2.4 M AMMONIUM SULFATE IN THE CRYSTALLIZATION CONDITION. LIQUID CHROMATOGRAPHY - MASS SPECTROMETRY DATA FROM THE PROTEIN PRIOR TO CRYSTALLIZATION DID NOT SHOW ANY EVIDENCE OF MODIFICATION. NOTE THAT PHOSPHOSERINE (SEP) WOULD ALSO FIT THE DENSITY AND CANNOT BE RULED OUT. ; _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.solvent_model_param_bsol ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4HF7 _refine_analyze.Luzzati_coordinate_error_obs 0.214 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1617 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 259 _refine_hist.number_atoms_total 1876 _refine_hist.d_res_high 1.7700 _refine_hist.d_res_low 46.470 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 784 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 46 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 246 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1678 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 222 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 2264 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1678 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 2282 0.980 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.150 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.780 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.7700 _refine_ls_shell.d_res_low 1.8500 _refine_ls_shell.pdbx_total_number_of_bins_used 12 _refine_ls_shell.percent_reflns_obs 98.2200 _refine_ls_shell.number_reflns_R_work 2836 _refine_ls_shell.R_factor_all 0.2237 _refine_ls_shell.R_factor_R_work 0.2236 _refine_ls_shell.R_factor_R_free 0.2255 _refine_ls_shell.percent_reflns_R_free 4.6700 _refine_ls_shell.number_reflns_R_free 139 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2975 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4HF7 _struct.title 'Crystal structure of a GDSL-like lipase (BT0569) from Bacteroides thetaiotaomicron VPI-5482 at 1.77 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;PF13472 family, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, HYDROLASE ; _struct_keywords.entry_id 4HF7 # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 9 ? LEU A 19 ? TYR A 36 LEU A 46 1 ? 11 HELX_P HELX_P2 2 VAL A 23 ? LYS A 27 ? VAL A 50 LYS A 54 5 ? 5 HELX_P HELX_P3 3 ASN A 34 ? HIS A 44 ? ASN A 61 HIS A 71 1 ? 11 HELX_P HELX_P4 4 HIS A 44 ? GLY A 52 ? HIS A 71 GLY A 79 1 ? 9 HELX_P HELX_P5 5 THR A 62 ? VAL A 74 ? THR A 89 VAL A 101 1 ? 13 HELX_P HELX_P6 6 ILE A 75 ? SER A 78 ? ILE A 102 SER A 105 5 ? 4 HELX_P HELX_P7 7 GLY A 87 ? ALA A 92 ? GLY A 114 ALA A 119 1 ? 6 HELX_P HELX_P8 8 ASN A 99 ? ASN A 117 ? ASN A 126 ASN A 144 1 ? 19 HELX_P HELX_P9 9 ASP A 140 ? ASN A 159 ? ASP A 167 ASN A 186 1 ? 20 HELX_P HELX_P10 10 TYR A 166 ? MSE A 170 ? TYR A 193 MSE A 197 1 ? 5 HELX_P HELX_P11 11 PRO A 180 ? THR A 183 ? PRO A 207 THR A 210 5 ? 4 HELX_P HELX_P12 12 THR A 190 ? LEU A 209 ? THR A 217 LEU A 236 1 ? 20 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A PHE 31 C ? ? ? 1_555 A MSE 32 N ? ? A PHE 58 A MSE 59 1_555 ? ? ? ? ? ? ? 1.326 ? ? covale2 covale both ? A MSE 32 C ? ? ? 1_555 A GLY 33 N ? ? A MSE 59 A GLY 60 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? A ASN 34 C ? ? ? 1_555 A OSE 35 N ? ? A ASN 61 A OSE 62 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale4 covale both ? A OSE 35 C ? ? ? 1_555 A ILE 36 N ? ? A OSE 62 A ILE 63 1_555 ? ? ? ? ? ? ? 1.345 ? ? covale5 covale both ? A SER 109 C ? ? ? 1_555 A MSE 110 N ? ? A SER 136 A MSE 137 1_555 ? ? ? ? ? ? ? 1.365 ? ? covale6 covale both ? A MSE 110 C ? ? ? 1_555 A ALA 111 N ? ? A MSE 137 A ALA 138 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale7 covale both ? A PRO 169 C ? ? ? 1_555 A MSE 170 N ? ? A PRO 196 A MSE 197 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale8 covale both ? A MSE 170 C ? ? ? 1_555 A VAL 171 N ? ? A MSE 197 A VAL 198 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale9 covale both ? A ILE 196 C ? ? ? 1_555 A MSE 197 N ? ? A ILE 223 A MSE 224 1_555 ? ? ? ? ? ? ? 1.352 ? ? covale10 covale both ? A MSE 197 C ? ? ? 1_555 A GLU 198 N ? ? A MSE 224 A GLU 225 1_555 ? ? ? ? ? ? ? 1.350 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 53 ? GLY A 57 ? TYR A 80 GLY A 84 A 2 VAL A 29 ? GLY A 33 ? VAL A 56 GLY A 60 A 3 LEU A 81 ? ILE A 84 ? LEU A 108 ILE A 111 A 4 LYS A 120 ? THR A 124 ? LYS A 147 THR A 151 A 5 PHE A 163 ? VAL A 164 ? PHE A 190 VAL A 191 B 1 VAL A 171 ? VAL A 172 ? VAL A 198 VAL A 199 B 2 ALA A 177 ? LEU A 178 ? ALA A 204 LEU A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ILE A 54 ? O ILE A 81 N VAL A 29 ? N VAL A 56 A 2 3 N MSE A 32 ? N MSE A 59 O VAL A 83 ? O VAL A 110 A 3 4 N ILE A 84 ? N ILE A 111 O ILE A 122 ? O ILE A 149 A 4 5 N LEU A 123 ? N LEU A 150 O VAL A 164 ? O VAL A 191 B 1 2 N VAL A 172 ? N VAL A 199 O ALA A 177 ? O ALA A 204 # _atom_sites.entry_id 4HF7 _atom_sites.fract_transf_matrix[1][1] 0.019531 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009035 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011264 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 GLN 2 29 ? ? ? A . n A 1 3 LYS 3 30 ? ? ? A . n A 1 4 HIS 4 31 ? ? ? A . n A 1 5 GLU 5 32 32 GLU GLU A . n A 1 6 PHE 6 33 33 PHE PHE A . n A 1 7 ALA 7 34 34 ALA ALA A . n A 1 8 ASN 8 35 35 ASN ASN A . n A 1 9 TYR 9 36 36 TYR TYR A . n A 1 10 LYS 10 37 37 LYS LYS A . n A 1 11 ARG 11 38 38 ARG ARG A . n A 1 12 TYR 12 39 39 TYR TYR A . n A 1 13 ALA 13 40 40 ALA ALA A . n A 1 14 THR 14 41 41 THR THR A . n A 1 15 GLU 15 42 42 GLU GLU A . n A 1 16 ASN 16 43 43 ASN ASN A . n A 1 17 ALA 17 44 44 ALA ALA A . n A 1 18 ALA 18 45 45 ALA ALA A . n A 1 19 LEU 19 46 46 LEU LEU A . n A 1 20 ALA 20 47 47 ALA ALA A . n A 1 21 GLN 21 48 48 GLN GLN A . n A 1 22 PRO 22 49 49 PRO PRO A . n A 1 23 VAL 23 50 50 VAL VAL A . n A 1 24 LYS 24 51 51 LYS LYS A . n A 1 25 LYS 25 52 52 LYS LYS A . n A 1 26 GLU 26 53 53 GLU GLU A . n A 1 27 LYS 27 54 54 LYS LYS A . n A 1 28 ARG 28 55 55 ARG ARG A . n A 1 29 VAL 29 56 56 VAL VAL A . n A 1 30 VAL 30 57 57 VAL VAL A . n A 1 31 PHE 31 58 58 PHE PHE A . n A 1 32 MSE 32 59 59 MSE MSE A . n A 1 33 GLY 33 60 60 GLY GLY A . n A 1 34 ASN 34 61 61 ASN ASN A . n A 1 35 OSE 35 62 62 OSE OSE A . n A 1 36 ILE 36 63 63 ILE ILE A . n A 1 37 THR 37 64 64 THR THR A . n A 1 38 GLU 38 65 65 GLU GLU A . n A 1 39 GLY 39 66 66 GLY GLY A . n A 1 40 TRP 40 67 67 TRP TRP A . n A 1 41 VAL 41 68 68 VAL VAL A . n A 1 42 ARG 42 69 69 ARG ARG A . n A 1 43 THR 43 70 70 THR THR A . n A 1 44 HIS 44 71 71 HIS HIS A . n A 1 45 PRO 45 72 72 PRO PRO A . n A 1 46 ASP 46 73 73 ASP ASP A . n A 1 47 PHE 47 74 74 PHE PHE A . n A 1 48 PHE 48 75 75 PHE PHE A . n A 1 49 LYS 49 76 76 LYS LYS A . n A 1 50 THR 50 77 77 THR THR A . n A 1 51 ASN 51 78 78 ASN ASN A . n A 1 52 GLY 52 79 79 GLY GLY A . n A 1 53 TYR 53 80 80 TYR TYR A . n A 1 54 ILE 54 81 81 ILE ILE A . n A 1 55 GLY 55 82 82 GLY GLY A . n A 1 56 ARG 56 83 83 ARG ARG A . n A 1 57 GLY 57 84 84 GLY GLY A . n A 1 58 ILE 58 85 85 ILE ILE A . n A 1 59 SER 59 86 86 SER SER A . n A 1 60 GLY 60 87 87 GLY GLY A . n A 1 61 GLN 61 88 88 GLN GLN A . n A 1 62 THR 62 89 89 THR THR A . n A 1 63 SER 63 90 90 SER SER A . n A 1 64 TYR 64 91 91 TYR TYR A . n A 1 65 GLN 65 92 92 GLN GLN A . n A 1 66 PHE 66 93 93 PHE PHE A . n A 1 67 LEU 67 94 94 LEU LEU A . n A 1 68 LEU 68 95 95 LEU LEU A . n A 1 69 ARG 69 96 96 ARG ARG A . n A 1 70 PHE 70 97 97 PHE PHE A . n A 1 71 ARG 71 98 98 ARG ARG A . n A 1 72 GLU 72 99 99 GLU GLU A . n A 1 73 ASP 73 100 100 ASP ASP A . n A 1 74 VAL 74 101 101 VAL VAL A . n A 1 75 ILE 75 102 102 ILE ILE A . n A 1 76 ASN 76 103 103 ASN ASN A . n A 1 77 LEU 77 104 104 LEU LEU A . n A 1 78 SER 78 105 105 SER SER A . n A 1 79 PRO 79 106 106 PRO PRO A . n A 1 80 ALA 80 107 107 ALA ALA A . n A 1 81 LEU 81 108 108 LEU LEU A . n A 1 82 VAL 82 109 109 VAL VAL A . n A 1 83 VAL 83 110 110 VAL VAL A . n A 1 84 ILE 84 111 111 ILE ILE A . n A 1 85 ASN 85 112 112 ASN ASN A . n A 1 86 ALA 86 113 113 ALA ALA A . n A 1 87 GLY 87 114 114 GLY GLY A . n A 1 88 THR 88 115 115 THR THR A . n A 1 89 ASN 89 116 116 ASN ASN A . n A 1 90 ASP 90 117 117 ASP ASP A . n A 1 91 VAL 91 118 118 VAL VAL A . n A 1 92 ALA 92 119 119 ALA ALA A . n A 1 93 GLU 93 120 120 GLU GLU A . n A 1 94 ASN 94 121 121 ASN ASN A . n A 1 95 THR 95 122 122 THR THR A . n A 1 96 GLY 96 123 123 GLY GLY A . n A 1 97 ALA 97 124 124 ALA ALA A . n A 1 98 TYR 98 125 125 TYR TYR A . n A 1 99 ASN 99 126 126 ASN ASN A . n A 1 100 GLU 100 127 127 GLU GLU A . n A 1 101 ASP 101 128 128 ASP ASP A . n A 1 102 TYR 102 129 129 TYR TYR A . n A 1 103 THR 103 130 130 THR THR A . n A 1 104 PHE 104 131 131 PHE PHE A . n A 1 105 GLY 105 132 132 GLY GLY A . n A 1 106 ASN 106 133 133 ASN ASN A . n A 1 107 ILE 107 134 134 ILE ILE A . n A 1 108 ALA 108 135 135 ALA ALA A . n A 1 109 SER 109 136 136 SER SER A . n A 1 110 MSE 110 137 137 MSE MSE A . n A 1 111 ALA 111 138 138 ALA ALA A . n A 1 112 GLU 112 139 139 GLU GLU A . n A 1 113 LEU 113 140 140 LEU LEU A . n A 1 114 ALA 114 141 141 ALA ALA A . n A 1 115 LYS 115 142 142 LYS LYS A . n A 1 116 ALA 116 143 143 ALA ALA A . n A 1 117 ASN 117 144 144 ASN ASN A . n A 1 118 LYS 118 145 145 LYS LYS A . n A 1 119 ILE 119 146 146 ILE ILE A . n A 1 120 LYS 120 147 147 LYS LYS A . n A 1 121 VAL 121 148 148 VAL VAL A . n A 1 122 ILE 122 149 149 ILE ILE A . n A 1 123 LEU 123 150 150 LEU LEU A . n A 1 124 THR 124 151 151 THR THR A . n A 1 125 SER 125 152 152 SER SER A . n A 1 126 VAL 126 153 153 VAL VAL A . n A 1 127 LEU 127 154 154 LEU LEU A . n A 1 128 PRO 128 155 155 PRO PRO A . n A 1 129 ALA 129 156 156 ALA ALA A . n A 1 130 ALA 130 157 157 ALA ALA A . n A 1 131 GLU 131 158 158 GLU GLU A . n A 1 132 PHE 132 159 159 PHE PHE A . n A 1 133 PRO 133 160 160 PRO PRO A . n A 1 134 TRP 134 161 161 TRP TRP A . n A 1 135 ARG 135 162 162 ARG ARG A . n A 1 136 ARG 136 163 163 ARG ARG A . n A 1 137 GLU 137 164 164 GLU GLU A . n A 1 138 ILE 138 165 165 ILE ILE A . n A 1 139 LYS 139 166 166 LYS LYS A . n A 1 140 ASP 140 167 167 ASP ASP A . n A 1 141 ALA 141 168 168 ALA ALA A . n A 1 142 PRO 142 169 169 PRO PRO A . n A 1 143 GLN 143 170 170 GLN GLN A . n A 1 144 LYS 144 171 171 LYS LYS A . n A 1 145 ILE 145 172 172 ILE ILE A . n A 1 146 GLN 146 173 173 GLN GLN A . n A 1 147 SER 147 174 174 SER SER A . n A 1 148 LEU 148 175 175 LEU LEU A . n A 1 149 ASN 149 176 176 ASN ASN A . n A 1 150 ALA 150 177 177 ALA ALA A . n A 1 151 ARG 151 178 178 ARG ARG A . n A 1 152 ILE 152 179 179 ILE ILE A . n A 1 153 GLU 153 180 180 GLU GLU A . n A 1 154 ALA 154 181 181 ALA ALA A . n A 1 155 TYR 155 182 182 TYR TYR A . n A 1 156 ALA 156 183 183 ALA ALA A . n A 1 157 LYS 157 184 184 LYS LYS A . n A 1 158 ALA 158 185 185 ALA ALA A . n A 1 159 ASN 159 186 186 ASN ASN A . n A 1 160 LYS 160 187 187 LYS LYS A . n A 1 161 ILE 161 188 188 ILE ILE A . n A 1 162 PRO 162 189 189 PRO PRO A . n A 1 163 PHE 163 190 190 PHE PHE A . n A 1 164 VAL 164 191 191 VAL VAL A . n A 1 165 ASN 165 192 192 ASN ASN A . n A 1 166 TYR 166 193 193 TYR TYR A . n A 1 167 TYR 167 194 194 TYR TYR A . n A 1 168 GLN 168 195 195 GLN GLN A . n A 1 169 PRO 169 196 196 PRO PRO A . n A 1 170 MSE 170 197 197 MSE MSE A . n A 1 171 VAL 171 198 198 VAL VAL A . n A 1 172 VAL 172 199 199 VAL VAL A . n A 1 173 GLY 173 200 200 GLY GLY A . n A 1 174 GLU 174 201 201 GLU GLU A . n A 1 175 ASN 175 202 202 ASN ASN A . n A 1 176 LYS 176 203 203 LYS LYS A . n A 1 177 ALA 177 204 204 ALA ALA A . n A 1 178 LEU 178 205 205 LEU LEU A . n A 1 179 ASN 179 206 206 ASN ASN A . n A 1 180 PRO 180 207 207 PRO PRO A . n A 1 181 GLN 181 208 208 GLN GLN A . n A 1 182 TYR 182 209 209 TYR TYR A . n A 1 183 THR 183 210 210 THR THR A . n A 1 184 LYS 184 211 211 LYS LYS A . n A 1 185 ASP 185 212 212 ASP ASP A . n A 1 186 GLY 186 213 213 GLY GLY A . n A 1 187 VAL 187 214 214 VAL VAL A . n A 1 188 HIS 188 215 215 HIS HIS A . n A 1 189 PRO 189 216 216 PRO PRO A . n A 1 190 THR 190 217 217 THR THR A . n A 1 191 GLY 191 218 218 GLY GLY A . n A 1 192 GLU 192 219 219 GLU GLU A . n A 1 193 GLY 193 220 220 GLY GLY A . n A 1 194 TYR 194 221 221 TYR TYR A . n A 1 195 ASP 195 222 222 ASP ASP A . n A 1 196 ILE 196 223 223 ILE ILE A . n A 1 197 MSE 197 224 224 MSE MSE A . n A 1 198 GLU 198 225 225 GLU GLU A . n A 1 199 ALA 199 226 226 ALA ALA A . n A 1 200 LEU 200 227 227 LEU LEU A . n A 1 201 ILE 201 228 228 ILE ILE A . n A 1 202 LYS 202 229 229 LYS LYS A . n A 1 203 GLN 203 230 230 GLN GLN A . n A 1 204 ALA 204 231 231 ALA ALA A . n A 1 205 ILE 205 232 232 ILE ILE A . n A 1 206 GLU 206 233 233 GLU GLU A . n A 1 207 LYS 207 234 234 LYS LYS A . n A 1 208 ALA 208 235 235 ALA ALA A . n A 1 209 LEU 209 236 236 LEU LEU A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG _pdbx_SG_project.id 1 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 300 300 HOH HOH A . B 2 HOH 2 301 301 HOH HOH A . B 2 HOH 3 302 302 HOH HOH A . B 2 HOH 4 303 303 HOH HOH A . B 2 HOH 5 304 304 HOH HOH A . B 2 HOH 6 305 305 HOH HOH A . B 2 HOH 7 306 306 HOH HOH A . B 2 HOH 8 307 307 HOH HOH A . B 2 HOH 9 308 308 HOH HOH A . B 2 HOH 10 309 309 HOH HOH A . B 2 HOH 11 310 310 HOH HOH A . B 2 HOH 12 311 311 HOH HOH A . B 2 HOH 13 312 312 HOH HOH A . B 2 HOH 14 313 313 HOH HOH A . B 2 HOH 15 314 314 HOH HOH A . B 2 HOH 16 315 315 HOH HOH A . B 2 HOH 17 316 316 HOH HOH A . B 2 HOH 18 317 317 HOH HOH A . B 2 HOH 19 318 318 HOH HOH A . B 2 HOH 20 319 319 HOH HOH A . B 2 HOH 21 320 320 HOH HOH A . B 2 HOH 22 321 321 HOH HOH A . B 2 HOH 23 322 322 HOH HOH A . B 2 HOH 24 323 323 HOH HOH A . B 2 HOH 25 324 324 HOH HOH A . B 2 HOH 26 325 325 HOH HOH A . B 2 HOH 27 326 326 HOH HOH A . B 2 HOH 28 327 327 HOH HOH A . B 2 HOH 29 328 328 HOH HOH A . B 2 HOH 30 329 329 HOH HOH A . B 2 HOH 31 330 330 HOH HOH A . B 2 HOH 32 331 331 HOH HOH A . B 2 HOH 33 332 332 HOH HOH A . B 2 HOH 34 333 333 HOH HOH A . B 2 HOH 35 334 334 HOH HOH A . B 2 HOH 36 335 335 HOH HOH A . B 2 HOH 37 336 336 HOH HOH A . B 2 HOH 38 337 337 HOH HOH A . B 2 HOH 39 338 338 HOH HOH A . B 2 HOH 40 339 339 HOH HOH A . B 2 HOH 41 340 340 HOH HOH A . B 2 HOH 42 341 341 HOH HOH A . B 2 HOH 43 342 342 HOH HOH A . B 2 HOH 44 343 343 HOH HOH A . B 2 HOH 45 344 344 HOH HOH A . B 2 HOH 46 345 345 HOH HOH A . B 2 HOH 47 346 346 HOH HOH A . B 2 HOH 48 347 347 HOH HOH A . B 2 HOH 49 348 348 HOH HOH A . B 2 HOH 50 349 349 HOH HOH A . B 2 HOH 51 350 350 HOH HOH A . B 2 HOH 52 351 351 HOH HOH A . B 2 HOH 53 352 352 HOH HOH A . B 2 HOH 54 353 353 HOH HOH A . B 2 HOH 55 354 354 HOH HOH A . B 2 HOH 56 355 355 HOH HOH A . B 2 HOH 57 356 356 HOH HOH A . B 2 HOH 58 357 357 HOH HOH A . B 2 HOH 59 358 358 HOH HOH A . B 2 HOH 60 359 359 HOH HOH A . B 2 HOH 61 360 360 HOH HOH A . B 2 HOH 62 361 361 HOH HOH A . B 2 HOH 63 362 362 HOH HOH A . B 2 HOH 64 363 363 HOH HOH A . B 2 HOH 65 364 364 HOH HOH A . B 2 HOH 66 365 365 HOH HOH A . B 2 HOH 67 366 366 HOH HOH A . B 2 HOH 68 367 367 HOH HOH A . B 2 HOH 69 368 368 HOH HOH A . B 2 HOH 70 369 369 HOH HOH A . B 2 HOH 71 370 370 HOH HOH A . B 2 HOH 72 371 371 HOH HOH A . B 2 HOH 73 372 372 HOH HOH A . B 2 HOH 74 373 373 HOH HOH A . B 2 HOH 75 374 374 HOH HOH A . B 2 HOH 76 375 375 HOH HOH A . B 2 HOH 77 376 376 HOH HOH A . B 2 HOH 78 377 377 HOH HOH A . B 2 HOH 79 378 378 HOH HOH A . B 2 HOH 80 379 379 HOH HOH A . B 2 HOH 81 380 380 HOH HOH A . B 2 HOH 82 381 381 HOH HOH A . B 2 HOH 83 382 382 HOH HOH A . B 2 HOH 84 383 383 HOH HOH A . B 2 HOH 85 384 384 HOH HOH A . B 2 HOH 86 385 385 HOH HOH A . B 2 HOH 87 386 386 HOH HOH A . B 2 HOH 88 387 387 HOH HOH A . B 2 HOH 89 388 388 HOH HOH A . B 2 HOH 90 389 389 HOH HOH A . B 2 HOH 91 390 390 HOH HOH A . B 2 HOH 92 391 391 HOH HOH A . B 2 HOH 93 392 392 HOH HOH A . B 2 HOH 94 393 393 HOH HOH A . B 2 HOH 95 394 394 HOH HOH A . B 2 HOH 96 395 395 HOH HOH A . B 2 HOH 97 396 396 HOH HOH A . B 2 HOH 98 397 397 HOH HOH A . B 2 HOH 99 398 398 HOH HOH A . B 2 HOH 100 399 399 HOH HOH A . B 2 HOH 101 400 400 HOH HOH A . B 2 HOH 102 401 401 HOH HOH A . B 2 HOH 103 402 402 HOH HOH A . B 2 HOH 104 403 403 HOH HOH A . B 2 HOH 105 404 404 HOH HOH A . B 2 HOH 106 405 405 HOH HOH A . B 2 HOH 107 406 406 HOH HOH A . B 2 HOH 108 407 407 HOH HOH A . B 2 HOH 109 408 408 HOH HOH A . B 2 HOH 110 409 409 HOH HOH A . B 2 HOH 111 410 410 HOH HOH A . B 2 HOH 112 411 411 HOH HOH A . B 2 HOH 113 412 412 HOH HOH A . B 2 HOH 114 413 413 HOH HOH A . B 2 HOH 115 414 414 HOH HOH A . B 2 HOH 116 415 415 HOH HOH A . B 2 HOH 117 416 416 HOH HOH A . B 2 HOH 118 417 417 HOH HOH A . B 2 HOH 119 418 418 HOH HOH A . B 2 HOH 120 419 419 HOH HOH A . B 2 HOH 121 420 420 HOH HOH A . B 2 HOH 122 421 421 HOH HOH A . B 2 HOH 123 422 422 HOH HOH A . B 2 HOH 124 423 423 HOH HOH A . B 2 HOH 125 424 424 HOH HOH A . B 2 HOH 126 425 425 HOH HOH A . B 2 HOH 127 426 426 HOH HOH A . B 2 HOH 128 427 427 HOH HOH A . B 2 HOH 129 428 428 HOH HOH A . B 2 HOH 130 429 429 HOH HOH A . B 2 HOH 131 430 430 HOH HOH A . B 2 HOH 132 431 431 HOH HOH A . B 2 HOH 133 432 432 HOH HOH A . B 2 HOH 134 433 433 HOH HOH A . B 2 HOH 135 434 434 HOH HOH A . B 2 HOH 136 435 435 HOH HOH A . B 2 HOH 137 436 436 HOH HOH A . B 2 HOH 138 437 437 HOH HOH A . B 2 HOH 139 438 438 HOH HOH A . B 2 HOH 140 439 439 HOH HOH A . B 2 HOH 141 440 440 HOH HOH A . B 2 HOH 142 441 441 HOH HOH A . B 2 HOH 143 442 442 HOH HOH A . B 2 HOH 144 443 443 HOH HOH A . B 2 HOH 145 444 444 HOH HOH A . B 2 HOH 146 445 445 HOH HOH A . B 2 HOH 147 446 446 HOH HOH A . B 2 HOH 148 447 447 HOH HOH A . B 2 HOH 149 448 448 HOH HOH A . B 2 HOH 150 449 449 HOH HOH A . B 2 HOH 151 450 450 HOH HOH A . B 2 HOH 152 451 451 HOH HOH A . B 2 HOH 153 452 452 HOH HOH A . B 2 HOH 154 453 453 HOH HOH A . B 2 HOH 155 454 454 HOH HOH A . B 2 HOH 156 455 455 HOH HOH A . B 2 HOH 157 456 456 HOH HOH A . B 2 HOH 158 457 457 HOH HOH A . B 2 HOH 159 458 458 HOH HOH A . B 2 HOH 160 459 459 HOH HOH A . B 2 HOH 161 460 460 HOH HOH A . B 2 HOH 162 461 461 HOH HOH A . B 2 HOH 163 462 462 HOH HOH A . B 2 HOH 164 463 463 HOH HOH A . B 2 HOH 165 464 464 HOH HOH A . B 2 HOH 166 465 465 HOH HOH A . B 2 HOH 167 466 466 HOH HOH A . B 2 HOH 168 467 467 HOH HOH A . B 2 HOH 169 468 468 HOH HOH A . B 2 HOH 170 469 469 HOH HOH A . B 2 HOH 171 470 470 HOH HOH A . B 2 HOH 172 471 471 HOH HOH A . B 2 HOH 173 472 472 HOH HOH A . B 2 HOH 174 473 473 HOH HOH A . B 2 HOH 175 474 474 HOH HOH A . B 2 HOH 176 475 475 HOH HOH A . B 2 HOH 177 476 476 HOH HOH A . B 2 HOH 178 477 477 HOH HOH A . B 2 HOH 179 478 478 HOH HOH A . B 2 HOH 180 479 479 HOH HOH A . B 2 HOH 181 480 480 HOH HOH A . B 2 HOH 182 481 481 HOH HOH A . B 2 HOH 183 482 482 HOH HOH A . B 2 HOH 184 483 483 HOH HOH A . B 2 HOH 185 484 484 HOH HOH A . B 2 HOH 186 485 485 HOH HOH A . B 2 HOH 187 486 486 HOH HOH A . B 2 HOH 188 487 487 HOH HOH A . B 2 HOH 189 488 488 HOH HOH A . B 2 HOH 190 489 489 HOH HOH A . B 2 HOH 191 490 490 HOH HOH A . B 2 HOH 192 491 491 HOH HOH A . B 2 HOH 193 492 492 HOH HOH A . B 2 HOH 194 493 493 HOH HOH A . B 2 HOH 195 494 494 HOH HOH A . B 2 HOH 196 495 495 HOH HOH A . B 2 HOH 197 496 496 HOH HOH A . B 2 HOH 198 497 497 HOH HOH A . B 2 HOH 199 498 498 HOH HOH A . B 2 HOH 200 499 499 HOH HOH A . B 2 HOH 201 500 500 HOH HOH A . B 2 HOH 202 501 501 HOH HOH A . B 2 HOH 203 502 502 HOH HOH A . B 2 HOH 204 503 503 HOH HOH A . B 2 HOH 205 504 504 HOH HOH A . B 2 HOH 206 505 505 HOH HOH A . B 2 HOH 207 506 506 HOH HOH A . B 2 HOH 208 507 507 HOH HOH A . B 2 HOH 209 508 508 HOH HOH A . B 2 HOH 210 509 509 HOH HOH A . B 2 HOH 211 510 510 HOH HOH A . B 2 HOH 212 511 511 HOH HOH A . B 2 HOH 213 512 512 HOH HOH A . B 2 HOH 214 513 513 HOH HOH A . B 2 HOH 215 514 514 HOH HOH A . B 2 HOH 216 515 515 HOH HOH A . B 2 HOH 217 516 516 HOH HOH A . B 2 HOH 218 517 517 HOH HOH A . B 2 HOH 219 518 518 HOH HOH A . B 2 HOH 220 519 519 HOH HOH A . B 2 HOH 221 520 520 HOH HOH A . B 2 HOH 222 521 521 HOH HOH A . B 2 HOH 223 522 522 HOH HOH A . B 2 HOH 224 523 523 HOH HOH A . B 2 HOH 225 524 524 HOH HOH A . B 2 HOH 226 525 525 HOH HOH A . B 2 HOH 227 526 526 HOH HOH A . B 2 HOH 228 527 527 HOH HOH A . B 2 HOH 229 528 528 HOH HOH A . B 2 HOH 230 529 529 HOH HOH A . B 2 HOH 231 530 530 HOH HOH A . B 2 HOH 232 531 531 HOH HOH A . B 2 HOH 233 532 532 HOH HOH A . B 2 HOH 234 533 533 HOH HOH A . B 2 HOH 235 534 534 HOH HOH A . B 2 HOH 236 535 535 HOH HOH A . B 2 HOH 237 536 536 HOH HOH A . B 2 HOH 238 537 537 HOH HOH A . B 2 HOH 239 538 538 HOH HOH A . B 2 HOH 240 539 539 HOH HOH A . B 2 HOH 241 540 540 HOH HOH A . B 2 HOH 242 541 541 HOH HOH A . B 2 HOH 243 542 542 HOH HOH A . B 2 HOH 244 543 543 HOH HOH A . B 2 HOH 245 544 544 HOH HOH A . B 2 HOH 246 545 545 HOH HOH A . B 2 HOH 247 546 546 HOH HOH A . B 2 HOH 248 547 547 HOH HOH A . B 2 HOH 249 548 548 HOH HOH A . B 2 HOH 250 549 549 HOH HOH A . B 2 HOH 251 550 550 HOH HOH A . B 2 HOH 252 551 551 HOH HOH A . B 2 HOH 253 552 552 HOH HOH A . B 2 HOH 254 553 553 HOH HOH A . B 2 HOH 255 554 554 HOH HOH A . B 2 HOH 256 555 555 HOH HOH A . B 2 HOH 257 556 556 HOH HOH A . B 2 HOH 258 557 557 HOH HOH A . B 2 HOH 259 558 558 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 32 A MSE 59 ? MET SELENOMETHIONINE 2 A OSE 35 A OSE 62 ? SER O-SULFO-L-SERINE 3 A MSE 110 A MSE 137 ? MET SELENOMETHIONINE 4 A MSE 170 A MSE 197 ? MET SELENOMETHIONINE 5 A MSE 197 A MSE 224 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1590 ? 1 MORE -11 ? 1 'SSA (A^2)' 18210 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 110.6800000000 0.0000000000 0.0000000000 -1.0000000000 88.7760000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id HOH _pdbx_struct_special_symmetry.auth_seq_id 432 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id HOH _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-10-24 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' database_2 3 3 'Structure model' struct_conn 4 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 2.5815 _pdbx_refine_tls.origin_y 39.5642 _pdbx_refine_tls.origin_z 47.4086 _pdbx_refine_tls.T[1][1] 0.0254 _pdbx_refine_tls.T[2][2] -0.0432 _pdbx_refine_tls.T[3][3] -0.0719 _pdbx_refine_tls.T[1][2] -0.0056 _pdbx_refine_tls.T[1][3] -0.0037 _pdbx_refine_tls.T[2][3] 0.0055 _pdbx_refine_tls.L[1][1] 0.5809 _pdbx_refine_tls.L[2][2] 0.6205 _pdbx_refine_tls.L[3][3] 0.0884 _pdbx_refine_tls.L[1][2] -0.0632 _pdbx_refine_tls.L[1][3] -0.1132 _pdbx_refine_tls.L[2][3] 0.0071 _pdbx_refine_tls.S[1][1] -0.0251 _pdbx_refine_tls.S[2][2] 0.0441 _pdbx_refine_tls.S[3][3] -0.0190 _pdbx_refine_tls.S[1][2] 0.0120 _pdbx_refine_tls.S[1][3] -0.0158 _pdbx_refine_tls.S[2][3] -0.0094 _pdbx_refine_tls.S[2][1] 0.0134 _pdbx_refine_tls.S[3][1] 0.0207 _pdbx_refine_tls.S[3][2] -0.0114 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 32 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 236 _pdbx_refine_tls_group.selection_details '{ A|32 - A|236 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'March 15, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.compound_details ? _pdbx_entry_details.sequence_details ;THE CONSTRUCT (RESIDUES 29-236) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. ; _pdbx_entry_details.entry_id 4HF7 _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 54 ? ? 38.92 61.58 2 1 ASN A 61 ? ? -106.82 -148.29 3 1 VAL A 101 ? ? -134.56 -68.54 4 1 ARG A 162 ? ? -161.66 68.37 5 1 VAL A 214 ? ? -129.06 -51.27 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 32 ? CG ? A GLU 5 CG 2 1 Y 1 A GLU 32 ? CD ? A GLU 5 CD 3 1 Y 1 A GLU 32 ? OE1 ? A GLU 5 OE1 4 1 Y 1 A GLU 32 ? OE2 ? A GLU 5 OE2 5 1 Y 1 A LYS 51 ? CG ? A LYS 24 CG 6 1 Y 1 A LYS 51 ? CD ? A LYS 24 CD 7 1 Y 1 A LYS 51 ? CE ? A LYS 24 CE 8 1 Y 1 A LYS 51 ? NZ ? A LYS 24 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 0 ? A GLY 1 2 1 Y 1 A GLN 29 ? A GLN 2 3 1 Y 1 A LYS 30 ? A LYS 3 4 1 Y 1 A HIS 31 ? A HIS 4 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #