HEADER OXIDOREDUCTASE 05-OCT-12 4HFM TITLE X-RAY CRYSTAL STRUCTURE OF A NADP(H)-BOUND DOUBLE BOND REDUCTASE FROM TITLE 2 NICOTIANA TABACUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLYL ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.3.1.74; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA TABACUM; SOURCE 3 ORGANISM_COMMON: AMERICAN TOBACCO,TOBACCO; SOURCE 4 ORGANISM_TAXID: 4097; SOURCE 5 GENE: NTADH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS ROSSMANN FOLD, TWISTED B-BARREL, ALKENE REDUCTION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.S.TOOGOOD,N.S.SCRUTTON REVDAT 3 20-SEP-23 4HFM 1 REMARK SEQADV REVDAT 2 18-APR-18 4HFM 1 JRNL REVDAT 1 30-JAN-13 4HFM 0 JRNL AUTH D.J.MANSELL,H.S.TOOGOOD,J.WALLER,J.M.HUGHES,C.W.LEVY, JRNL AUTH 2 J.M.GARDINER,N.S.SCRUTTON JRNL TITL BIOCATALYTIC ASYMMETRIC ALKENE REDUCTION: CRYSTAL STRUCTURE JRNL TITL 2 AND CHARACTERIZATION OF A DOUBLE BOND REDUCTASE JRNL TITL 3 FROMNICOTIANA TABACUM. JRNL REF ACS CATAL V. 3 370 2013 JRNL REFN ESSN 2155-5435 JRNL PMID 27547488 JRNL DOI 10.1021/CS300709M REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 56799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3035 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4064 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 222 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5027 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.03000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.134 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.078 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.478 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5343 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7251 ; 1.612 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 675 ; 6.273 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;38.646 ;24.466 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 902 ;14.761 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.220 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 804 ; 0.119 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3940 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3292 ; 0.920 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5298 ; 1.640 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2051 ; 2.557 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1941 ; 4.059 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 139 REMARK 3 RESIDUE RANGE : A 285 A 342 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9380 26.2724 30.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.0467 T22: 0.0765 REMARK 3 T33: 0.0635 T12: 0.0007 REMARK 3 T13: -0.0156 T23: -0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.0521 L22: 0.6844 REMARK 3 L33: 0.9985 L12: -0.4150 REMARK 3 L13: -0.5385 L23: 0.3786 REMARK 3 S TENSOR REMARK 3 S11: -0.0346 S12: -0.0683 S13: 0.0131 REMARK 3 S21: 0.1641 S22: 0.0319 S23: -0.0422 REMARK 3 S31: 0.0338 S32: 0.0117 S33: 0.0027 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 140 A 284 REMARK 3 ORIGIN FOR THE GROUP (A): 14.8421 12.0812 7.5853 REMARK 3 T TENSOR REMARK 3 T11: 0.0141 T22: 0.0704 REMARK 3 T33: 0.0478 T12: -0.0007 REMARK 3 T13: 0.0015 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 0.4664 L22: 1.5001 REMARK 3 L33: 0.6583 L12: -0.0691 REMARK 3 L13: -0.0167 L23: -0.0397 REMARK 3 S TENSOR REMARK 3 S11: 0.0191 S12: 0.0361 S13: 0.0371 REMARK 3 S21: -0.1168 S22: -0.0077 S23: -0.0769 REMARK 3 S31: 0.0289 S32: 0.0161 S33: -0.0114 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 139 REMARK 3 RESIDUE RANGE : B 285 B 343 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7736 -27.8407 -0.2745 REMARK 3 T TENSOR REMARK 3 T11: 0.0501 T22: 0.0468 REMARK 3 T33: 0.0690 T12: 0.0439 REMARK 3 T13: -0.0042 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.4826 L22: 1.3880 REMARK 3 L33: 3.2611 L12: -0.0795 REMARK 3 L13: -0.7485 L23: 1.1788 REMARK 3 S TENSOR REMARK 3 S11: 0.0720 S12: 0.0529 S13: 0.0173 REMARK 3 S21: 0.1103 S22: 0.1289 S23: -0.1683 REMARK 3 S31: -0.1619 S32: -0.0530 S33: -0.2009 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 140 B 284 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8118 -12.8616 20.9855 REMARK 3 T TENSOR REMARK 3 T11: 0.0896 T22: 0.0329 REMARK 3 T33: 0.0119 T12: -0.0196 REMARK 3 T13: 0.0036 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7053 L22: 3.0487 REMARK 3 L33: 1.3742 L12: -0.1949 REMARK 3 L13: -0.0708 L23: -0.4552 REMARK 3 S TENSOR REMARK 3 S11: -0.0257 S12: -0.0624 S13: 0.0078 REMARK 3 S21: 0.1807 S22: 0.0978 S23: 0.1634 REMARK 3 S31: 0.2313 S32: -0.0648 S33: -0.0721 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HFM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59835 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 60.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3J3H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM KH2PO4/CITRATE BUFFER PH 4.5 + REMARK 280 45% PEG 300, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 44.10000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 44.10000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 74.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 63 REMARK 465 GLU A 64 REMARK 465 GLY A 65 REMARK 465 SER A 66 REMARK 465 TYR A 67 REMARK 465 VAL A 68 REMARK 465 THR A 114 REMARK 465 GLN A 115 REMARK 465 GLU A 343 REMARK 465 LEU A 344 REMARK 465 GLU A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 MET B 1 REMARK 465 THR B 17 REMARK 465 GLY B 18 REMARK 465 TYR B 19 REMARK 465 LYS B 62 REMARK 465 ILE B 63 REMARK 465 GLU B 64 REMARK 465 GLY B 65 REMARK 465 SER B 66 REMARK 465 TYR B 67 REMARK 465 VAL B 68 REMARK 465 GLN B 115 REMARK 465 THR B 116 REMARK 465 TYR B 258 REMARK 465 ASN B 259 REMARK 465 LEU B 260 REMARK 465 GLU B 261 REMARK 465 GLN B 262 REMARK 465 THR B 263 REMARK 465 LEU B 344 REMARK 465 GLU B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CD CE NZ REMARK 470 LYS A 62 CD CE NZ REMARK 470 LYS A 92 CD CE NZ REMARK 470 LYS A 152 CE NZ REMARK 470 LYS A 234 CD CE NZ REMARK 470 GLN A 262 CD OE1 NE2 REMARK 470 ARG A 331 NE CZ NH1 NH2 REMARK 470 ARG A 342 CZ NH1 NH2 REMARK 470 LYS B 13 CE NZ REMARK 470 LYS B 21 CE NZ REMARK 470 LYS B 35 NZ REMARK 470 ARG B 57 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 69 CG CD OE1 OE2 REMARK 470 LYS B 84 CE NZ REMARK 470 LYS B 92 CD CE NZ REMARK 470 GLN B 94 CG CD OE1 NE2 REMARK 470 LYS B 152 CD CE NZ REMARK 470 LYS B 188 CD CE NZ REMARK 470 GLU B 189 CG CD OE1 OE2 REMARK 470 ASP B 192 CG OD1 OD2 REMARK 470 GLN B 210 CG CD OE1 NE2 REMARK 470 LYS B 217 CE NZ REMARK 470 LYS B 234 CD CE NZ REMARK 470 GLN B 301 CD OE1 NE2 REMARK 470 LYS B 306 CG CD CE NZ REMARK 470 VAL B 325 CG1 CG2 REMARK 470 GLU B 343 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 202 O HOH B 613 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 147 -60.02 -92.03 REMARK 500 ALA A 161 48.95 38.77 REMARK 500 MET A 254 58.02 -142.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 341 ARG A 342 145.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HFJ RELATED DB: PDB REMARK 900 RELATED ID: 4HFN RELATED DB: PDB DBREF 4HFM A 1 343 UNP Q9SLN8 Q9SLN8_TOBAC 1 343 DBREF 4HFM B 1 343 UNP Q9SLN8 Q9SLN8_TOBAC 1 343 SEQADV 4HFM LEU A 344 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM GLU A 345 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 346 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 347 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 348 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 349 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 350 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS A 351 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM LEU B 344 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM GLU B 345 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 346 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 347 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 348 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 349 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 350 UNP Q9SLN8 EXPRESSION TAG SEQADV 4HFM HIS B 351 UNP Q9SLN8 EXPRESSION TAG SEQRES 1 A 351 MET ALA GLU GLU VAL SER ASN LYS GLN VAL ILE LEU LYS SEQRES 2 A 351 ASN TYR VAL THR GLY TYR PRO LYS GLU SER ASP MET GLU SEQRES 3 A 351 ILE LYS ASN VAL THR ILE LYS LEU LYS VAL PRO GLU GLY SEQRES 4 A 351 SER ASN ASP VAL VAL VAL LYS ASN LEU TYR LEU SER CYS SEQRES 5 A 351 ASP PRO TYR MET ARG SER ARG MET ARG LYS ILE GLU GLY SEQRES 6 A 351 SER TYR VAL GLU SER PHE ALA PRO GLY SER PRO ILE THR SEQRES 7 A 351 GLY TYR GLY VAL ALA LYS VAL LEU GLU SER GLY ASP PRO SEQRES 8 A 351 LYS PHE GLN LYS GLY ASP LEU VAL TRP GLY MET THR GLY SEQRES 9 A 351 TRP GLU GLU TYR SER ILE ILE THR PRO THR GLN THR LEU SEQRES 10 A 351 PHE LYS ILE HIS ASP LYS ASP VAL PRO LEU SER TYR TYR SEQRES 11 A 351 THR GLY ILE LEU GLY MET PRO GLY MET THR ALA TYR ALA SEQRES 12 A 351 GLY PHE HIS GLU VAL CYS SER PRO LYS LYS GLY GLU THR SEQRES 13 A 351 VAL PHE VAL SER ALA ALA SER GLY ALA VAL GLY GLN LEU SEQRES 14 A 351 VAL GLY GLN PHE ALA LYS MET LEU GLY CYS TYR VAL VAL SEQRES 15 A 351 GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU LEU LYS SEQRES 16 A 351 SER LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS GLU SEQRES 17 A 351 GLU GLN ASP LEU SER ALA ALA LEU LYS ARG TYR PHE PRO SEQRES 18 A 351 ASP GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY LYS SEQRES 19 A 351 MET LEU ASP ALA VAL LEU VAL ASN MET LYS LEU TYR GLY SEQRES 20 A 351 ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR ASN LEU SEQRES 21 A 351 GLU GLN THR GLU GLY VAL HIS ASN LEU PHE CYS LEU ILE SEQRES 22 A 351 THR LYS ARG ILE ARG MET GLU GLY PHE LEU VAL PHE ASP SEQRES 23 A 351 TYR TYR HIS LEU TYR PRO LYS TYR LEU GLU MET VAL ILE SEQRES 24 A 351 PRO GLN ILE LYS ALA GLY LYS VAL VAL TYR VAL GLU ASP SEQRES 25 A 351 VAL ALA HIS GLY LEU GLU SER ALA PRO THR ALA LEU VAL SEQRES 26 A 351 GLY LEU PHE SER GLY ARG ASN ILE GLY LYS GLN VAL VAL SEQRES 27 A 351 MET VAL SER ARG GLU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 351 MET ALA GLU GLU VAL SER ASN LYS GLN VAL ILE LEU LYS SEQRES 2 B 351 ASN TYR VAL THR GLY TYR PRO LYS GLU SER ASP MET GLU SEQRES 3 B 351 ILE LYS ASN VAL THR ILE LYS LEU LYS VAL PRO GLU GLY SEQRES 4 B 351 SER ASN ASP VAL VAL VAL LYS ASN LEU TYR LEU SER CYS SEQRES 5 B 351 ASP PRO TYR MET ARG SER ARG MET ARG LYS ILE GLU GLY SEQRES 6 B 351 SER TYR VAL GLU SER PHE ALA PRO GLY SER PRO ILE THR SEQRES 7 B 351 GLY TYR GLY VAL ALA LYS VAL LEU GLU SER GLY ASP PRO SEQRES 8 B 351 LYS PHE GLN LYS GLY ASP LEU VAL TRP GLY MET THR GLY SEQRES 9 B 351 TRP GLU GLU TYR SER ILE ILE THR PRO THR GLN THR LEU SEQRES 10 B 351 PHE LYS ILE HIS ASP LYS ASP VAL PRO LEU SER TYR TYR SEQRES 11 B 351 THR GLY ILE LEU GLY MET PRO GLY MET THR ALA TYR ALA SEQRES 12 B 351 GLY PHE HIS GLU VAL CYS SER PRO LYS LYS GLY GLU THR SEQRES 13 B 351 VAL PHE VAL SER ALA ALA SER GLY ALA VAL GLY GLN LEU SEQRES 14 B 351 VAL GLY GLN PHE ALA LYS MET LEU GLY CYS TYR VAL VAL SEQRES 15 B 351 GLY SER ALA GLY SER LYS GLU LYS VAL ASP LEU LEU LYS SEQRES 16 B 351 SER LYS PHE GLY PHE ASP GLU ALA PHE ASN TYR LYS GLU SEQRES 17 B 351 GLU GLN ASP LEU SER ALA ALA LEU LYS ARG TYR PHE PRO SEQRES 18 B 351 ASP GLY ILE ASP ILE TYR PHE GLU ASN VAL GLY GLY LYS SEQRES 19 B 351 MET LEU ASP ALA VAL LEU VAL ASN MET LYS LEU TYR GLY SEQRES 20 B 351 ARG ILE ALA VAL CYS GLY MET ILE SER GLN TYR ASN LEU SEQRES 21 B 351 GLU GLN THR GLU GLY VAL HIS ASN LEU PHE CYS LEU ILE SEQRES 22 B 351 THR LYS ARG ILE ARG MET GLU GLY PHE LEU VAL PHE ASP SEQRES 23 B 351 TYR TYR HIS LEU TYR PRO LYS TYR LEU GLU MET VAL ILE SEQRES 24 B 351 PRO GLN ILE LYS ALA GLY LYS VAL VAL TYR VAL GLU ASP SEQRES 25 B 351 VAL ALA HIS GLY LEU GLU SER ALA PRO THR ALA LEU VAL SEQRES 26 B 351 GLY LEU PHE SER GLY ARG ASN ILE GLY LYS GLN VAL VAL SEQRES 27 B 351 MET VAL SER ARG GLU LEU GLU HIS HIS HIS HIS HIS HIS HET NAP A 400 48 HET NAP B 400 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 HOH *307(H2 O) HELIX 1 1 LYS A 21 SER A 23 5 3 HELIX 2 2 ASP A 53 ARG A 61 5 9 HELIX 3 3 PRO A 126 GLY A 132 5 7 HELIX 4 4 GLY A 135 GLU A 147 1 13 HELIX 5 5 VAL A 166 GLY A 178 1 13 HELIX 6 6 SER A 187 LYS A 197 1 11 HELIX 7 7 LYS A 207 GLU A 209 5 3 HELIX 8 8 ASP A 211 PHE A 220 1 10 HELIX 9 9 GLY A 233 VAL A 241 1 9 HELIX 10 10 MET A 254 TYR A 258 5 5 HELIX 11 11 PHE A 270 LYS A 275 1 6 HELIX 12 12 LEU A 283 HIS A 289 5 7 HELIX 13 13 LEU A 290 ALA A 304 1 15 HELIX 14 14 SER A 319 LEU A 327 1 9 HELIX 15 15 PHE A 328 GLY A 330 5 3 HELIX 16 16 LYS B 21 SER B 23 5 3 HELIX 17 17 ASP B 53 ARG B 61 5 9 HELIX 18 18 PRO B 126 GLY B 132 5 7 HELIX 19 19 GLY B 135 GLU B 147 1 13 HELIX 20 20 VAL B 166 LEU B 177 1 12 HELIX 21 21 SER B 187 LYS B 197 1 11 HELIX 22 22 ASP B 211 PHE B 220 1 10 HELIX 23 23 GLY B 233 VAL B 241 1 9 HELIX 24 24 PHE B 270 LYS B 275 1 6 HELIX 25 25 LEU B 283 HIS B 289 5 7 HELIX 26 26 LEU B 290 ALA B 304 1 15 HELIX 27 27 SER B 319 GLY B 326 1 8 HELIX 28 28 LEU B 327 GLY B 330 5 4 SHEET 1 A 2 GLU A 4 LEU A 12 0 SHEET 2 A 2 MET A 25 LYS A 33 -1 O GLU A 26 N ILE A 11 SHEET 1 B 5 TYR A 108 ILE A 111 0 SHEET 2 B 5 VAL A 43 SER A 51 -1 N VAL A 43 O ILE A 111 SHEET 3 B 5 THR A 78 SER A 88 -1 O LEU A 86 N VAL A 44 SHEET 4 B 5 LEU A 98 GLY A 104 -1 O VAL A 99 N ALA A 83 SHEET 5 B 5 PHE A 118 LYS A 119 -1 O PHE A 118 N TRP A 100 SHEET 1 C 4 TYR A 108 ILE A 111 0 SHEET 2 C 4 VAL A 43 SER A 51 -1 N VAL A 43 O ILE A 111 SHEET 3 C 4 LYS A 335 MET A 339 -1 O VAL A 338 N LEU A 50 SHEET 4 C 4 GLU A 311 HIS A 315 1 N ALA A 314 O MET A 339 SHEET 1 D12 GLU A 202 ASN A 205 0 SHEET 2 D12 TYR A 180 ALA A 185 1 N ALA A 185 O PHE A 204 SHEET 3 D12 THR A 156 VAL A 159 1 N VAL A 157 O TYR A 180 SHEET 4 D12 ILE A 224 GLU A 229 1 O ILE A 226 N PHE A 158 SHEET 5 D12 MET A 243 VAL A 251 1 O ARG A 248 N ASP A 225 SHEET 6 D12 ARG A 278 GLY A 281 1 O GLU A 280 N VAL A 251 SHEET 7 D12 ARG B 278 GLY B 281 -1 O MET B 279 N MET A 279 SHEET 8 D12 MET B 243 VAL B 251 1 N ILE B 249 O GLU B 280 SHEET 9 D12 ILE B 224 GLU B 229 1 N ILE B 224 O LYS B 244 SHEET 10 D12 THR B 156 VAL B 159 1 N PHE B 158 O ILE B 226 SHEET 11 D12 TYR B 180 ALA B 185 1 O TYR B 180 N VAL B 157 SHEET 12 D12 GLU B 202 ASN B 205 1 O PHE B 204 N ALA B 185 SHEET 1 E 2 GLU B 4 LEU B 12 0 SHEET 2 E 2 MET B 25 LYS B 33 -1 O GLU B 26 N ILE B 11 SHEET 1 F 5 TYR B 108 ILE B 111 0 SHEET 2 F 5 VAL B 43 CYS B 52 -1 N VAL B 43 O ILE B 111 SHEET 3 F 5 THR B 78 SER B 88 -1 O VAL B 82 N LEU B 48 SHEET 4 F 5 LEU B 98 GLY B 104 -1 O THR B 103 N GLY B 79 SHEET 5 F 5 PHE B 118 LYS B 119 -1 O PHE B 118 N TRP B 100 SHEET 1 G 4 TYR B 108 ILE B 111 0 SHEET 2 G 4 VAL B 43 CYS B 52 -1 N VAL B 43 O ILE B 111 SHEET 3 G 4 LYS B 335 MET B 339 -1 O VAL B 338 N LEU B 50 SHEET 4 G 4 GLU B 311 HIS B 315 1 N ALA B 314 O MET B 339 SITE 1 AC1 35 PRO A 54 MET A 136 THR A 140 GLY A 164 SITE 2 AC1 35 ALA A 165 VAL A 166 ALA A 185 GLY A 186 SITE 3 AC1 35 LYS A 190 TYR A 206 GLN A 210 ASN A 230 SITE 4 AC1 35 VAL A 231 CYS A 252 GLY A 253 ILE A 255 SITE 5 AC1 35 SER A 256 TYR A 258 PHE A 282 LEU A 283 SITE 6 AC1 35 VAL A 284 LEU A 327 PHE A 328 GLY A 330 SITE 7 AC1 35 ASN A 332 HOH A 501 HOH A 502 HOH A 504 SITE 8 AC1 35 HOH A 509 HOH A 511 HOH A 516 HOH A 570 SITE 9 AC1 35 HOH A 616 HOH A 630 HOH A 668 SITE 1 AC2 25 PRO B 54 MET B 136 THR B 140 ALA B 161 SITE 2 AC2 25 GLY B 164 ALA B 165 VAL B 166 ALA B 185 SITE 3 AC2 25 GLY B 186 LYS B 190 TYR B 206 ASN B 230 SITE 4 AC2 25 CYS B 252 GLY B 253 ILE B 255 PHE B 282 SITE 5 AC2 25 LEU B 283 VAL B 284 GLY B 330 ASN B 332 SITE 6 AC2 25 LYS B 335 HOH B 506 HOH B 513 HOH B 540 SITE 7 AC2 25 HOH B 585 CRYST1 88.200 149.840 66.610 90.00 115.53 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011338 0.000000 0.005415 0.00000 SCALE2 0.000000 0.006674 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016637 0.00000