HEADER HYDROLASE/HYDROLASE INHIBITOR 05-OCT-12 4HFP TITLE STRUCTURE OF THROMBIN MUTANT S195A BOUND TO THE ACTIVE SITE INHIBITOR TITLE 2 ARGATROBAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTHROMBIN; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 5 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 6 CHAIN; COMPND 7 EC: 3.4.21.5; COMPND 8 ENGINEERED: YES; COMPND 9 MUTATION: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: PROTHROMBIN; COMPND 12 CHAIN: B, D; COMPND 13 SYNONYM: COAGULATION FACTOR II, ACTIVATION PEPTIDE FRAGMENT 1, COMPND 14 ACTIVATION PEPTIDE FRAGMENT 2, THROMBIN LIGHT CHAIN, THROMBIN HEAVY COMPND 15 CHAIN; COMPND 16 EC: 3.4.21.5; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F2; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SERINE PROTEASE, PRETHROMBIN-2, AUTOACTIVATION, HYDROLASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.POZZI,Z.CHEN,F.ZAPATA,W.LIN,S.BARRANCO-MEDINA,L.A.PELC,E.DI CERA REVDAT 4 20-SEP-23 4HFP 1 REMARK SEQADV LINK REVDAT 3 22-MAY-13 4HFP 1 JRNL REVDAT 2 10-APR-13 4HFP 1 REMARK REVDAT 1 13-MAR-13 4HFP 0 JRNL AUTH N.POZZI,Z.CHEN,F.ZAPATA,W.NIU,S.BARRANCO-MEDINA,L.A.PELC, JRNL AUTH 2 E.DI CERA JRNL TITL AUTOACTIVATION OF THROMBIN PRECURSORS. JRNL REF J.BIOL.CHEM. V. 288 11601 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23467412 JRNL DOI 10.1074/JBC.M113.451542 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.42 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 20437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1105 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1364 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.1890 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4637 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 66 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.77000 REMARK 3 B22 (A**2) : 3.77000 REMARK 3 B33 (A**2) : -7.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.164 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.060 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.208 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 19.689 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.876 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4833 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6537 ; 0.994 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 5.169 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 226 ;35.848 ;23.363 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 850 ;17.231 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;14.425 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 677 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3666 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2845 ; 0.141 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4587 ; 0.258 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1988 ; 0.401 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1950 ; 0.636 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TWIN DETAILS REMARK 3 NUMBER OF TWIN DOMAINS : 2 REMARK 3 TWIN DOMAIN : 1 REMARK 3 TWIN OPERATOR : 1.000H, 1.000K, L REMARK 3 TWIN FRACTION : 0.524 REMARK 3 TWIN DOMAIN : 2 REMARK 3 TWIN OPERATOR : -1.000H, 1.000K, -L REMARK 3 TWIN FRACTION : 0.476 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 20 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 10 REMARK 3 ORIGIN FOR THE GROUP (A): 37.5953 10.5674 -2.8221 REMARK 3 T TENSOR REMARK 3 T11: 0.1441 T22: 0.1059 REMARK 3 T33: 0.3801 T12: -0.0765 REMARK 3 T13: 0.0513 T23: -0.0817 REMARK 3 L TENSOR REMARK 3 L11: 6.1926 L22: 3.8686 REMARK 3 L33: 8.2448 L12: 1.3092 REMARK 3 L13: -2.7766 L23: 2.9381 REMARK 3 S TENSOR REMARK 3 S11: -0.2292 S12: 0.1432 S13: 0.0706 REMARK 3 S21: -0.4424 S22: 0.3268 S23: -0.7999 REMARK 3 S31: -0.4864 S32: 0.1544 S33: -0.0977 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 14 REMARK 3 ORIGIN FOR THE GROUP (A): 29.9799 -1.5380 2.5553 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.6147 REMARK 3 T33: 0.7881 T12: 0.0114 REMARK 3 T13: -0.1709 T23: 0.2543 REMARK 3 L TENSOR REMARK 3 L11: 0.8532 L22: -1.2948 REMARK 3 L33: 10.8349 L12: 0.1506 REMARK 3 L13: -3.9802 L23: -1.5851 REMARK 3 S TENSOR REMARK 3 S11: -0.0172 S12: -0.2361 S13: -0.3490 REMARK 3 S21: -0.0845 S22: 0.0210 S23: -0.1389 REMARK 3 S31: 0.1165 S32: -0.0992 S33: -0.0038 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 16 B 38 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9865 18.8767 4.4834 REMARK 3 T TENSOR REMARK 3 T11: 0.1878 T22: 0.2382 REMARK 3 T33: 0.3188 T12: -0.0306 REMARK 3 T13: -0.0555 T23: -0.0876 REMARK 3 L TENSOR REMARK 3 L11: 1.7500 L22: 0.6850 REMARK 3 L33: 2.3605 L12: 0.5407 REMARK 3 L13: -1.1601 L23: -1.3369 REMARK 3 S TENSOR REMARK 3 S11: 0.0675 S12: 0.1843 S13: 0.1097 REMARK 3 S21: 0.0406 S22: -0.1135 S23: 0.0321 REMARK 3 S31: -0.1413 S32: 0.0497 S33: 0.0459 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 39 B 59 REMARK 3 ORIGIN FOR THE GROUP (A): 20.5917 22.3660 -6.2689 REMARK 3 T TENSOR REMARK 3 T11: 0.2488 T22: 0.0624 REMARK 3 T33: 0.2649 T12: -0.0171 REMARK 3 T13: 0.0295 T23: -0.0412 REMARK 3 L TENSOR REMARK 3 L11: 3.0755 L22: 1.3345 REMARK 3 L33: 2.9096 L12: 1.8674 REMARK 3 L13: 2.4217 L23: 0.4349 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: -0.0058 S13: 0.1302 REMARK 3 S21: 0.1608 S22: -0.0662 S23: 0.1961 REMARK 3 S31: -0.1284 S32: 0.1080 S33: -0.1052 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 60 B 85 REMARK 3 ORIGIN FOR THE GROUP (A): 20.0358 27.4823 0.8671 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.3511 REMARK 3 T33: 0.4355 T12: 0.0701 REMARK 3 T13: 0.0453 T23: -0.1285 REMARK 3 L TENSOR REMARK 3 L11: 0.9877 L22: 0.9082 REMARK 3 L33: 0.2355 L12: 0.4574 REMARK 3 L13: 0.3288 L23: -0.0321 REMARK 3 S TENSOR REMARK 3 S11: -0.1586 S12: -0.4372 S13: 0.5044 REMARK 3 S21: 0.0273 S22: 0.0756 S23: 0.0395 REMARK 3 S31: -0.2763 S32: -0.1762 S33: 0.0831 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 86 B 127 REMARK 3 ORIGIN FOR THE GROUP (A): 20.2951 19.5438 -11.3975 REMARK 3 T TENSOR REMARK 3 T11: 0.1801 T22: 0.1343 REMARK 3 T33: 0.1822 T12: -0.0304 REMARK 3 T13: 0.0187 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 2.1884 L22: 1.6288 REMARK 3 L33: 1.6158 L12: -0.2717 REMARK 3 L13: 0.0927 L23: 0.7300 REMARK 3 S TENSOR REMARK 3 S11: -0.1227 S12: 0.0949 S13: -0.0556 REMARK 3 S21: -0.3126 S22: 0.1249 S23: -0.0831 REMARK 3 S31: -0.2280 S32: 0.0875 S33: -0.0022 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 128 B 146 REMARK 3 ORIGIN FOR THE GROUP (A): 19.1677 5.6884 -1.1233 REMARK 3 T TENSOR REMARK 3 T11: 0.0737 T22: 0.0945 REMARK 3 T33: 0.2283 T12: 0.0137 REMARK 3 T13: 0.0024 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.8798 L22: 0.5110 REMARK 3 L33: 0.2132 L12: 0.4460 REMARK 3 L13: -0.2751 L23: -0.4028 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: 0.1123 S13: 0.0522 REMARK 3 S21: 0.0039 S22: 0.0404 S23: 0.1343 REMARK 3 S31: -0.0212 S32: -0.0438 S33: 0.0030 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 147 B 185 REMARK 3 ORIGIN FOR THE GROUP (A): 10.1657 6.8710 -1.1708 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1326 REMARK 3 T33: 0.1673 T12: 0.0587 REMARK 3 T13: 0.0155 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.1126 L22: 1.2439 REMARK 3 L33: 0.7593 L12: -0.2349 REMARK 3 L13: -1.0989 L23: 0.1794 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: -0.0108 S13: -0.0130 REMARK 3 S21: -0.1069 S22: 0.0868 S23: 0.0374 REMARK 3 S31: -0.1581 S32: -0.1530 S33: -0.0450 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 186 B 205 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8545 4.3804 -0.4517 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.0755 REMARK 3 T33: 0.1133 T12: 0.0031 REMARK 3 T13: 0.0105 T23: 0.0233 REMARK 3 L TENSOR REMARK 3 L11: 3.8805 L22: 2.4788 REMARK 3 L33: 2.0151 L12: 0.8432 REMARK 3 L13: -0.0993 L23: 0.6822 REMARK 3 S TENSOR REMARK 3 S11: -0.1770 S12: -0.0872 S13: -0.3693 REMARK 3 S21: 0.1799 S22: -0.0273 S23: -0.2012 REMARK 3 S31: 0.1410 S32: 0.0841 S33: 0.2043 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 206 B 245 REMARK 3 ORIGIN FOR THE GROUP (A): 17.2882 11.1490 -10.1083 REMARK 3 T TENSOR REMARK 3 T11: 0.1437 T22: 0.1019 REMARK 3 T33: 0.1754 T12: -0.0195 REMARK 3 T13: 0.0014 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 1.2790 L22: 2.8287 REMARK 3 L33: 0.9944 L12: -1.2059 REMARK 3 L13: 1.1055 L23: -0.3150 REMARK 3 S TENSOR REMARK 3 S11: -0.0574 S12: 0.2069 S13: 0.2014 REMARK 3 S21: -0.3412 S22: -0.0721 S23: -0.1459 REMARK 3 S31: -0.1729 S32: 0.2029 S33: 0.1295 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 8 REMARK 3 ORIGIN FOR THE GROUP (A): 48.7180 -1.1094 -1.5063 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.3844 REMARK 3 T33: 0.3772 T12: 0.0630 REMARK 3 T13: 0.0125 T23: -0.0813 REMARK 3 L TENSOR REMARK 3 L11: 9.2105 L22: 14.1278 REMARK 3 L33: 1.0154 L12: 11.9551 REMARK 3 L13: -2.5678 L23: -0.9080 REMARK 3 S TENSOR REMARK 3 S11: 0.2837 S12: -0.9317 S13: 0.4444 REMARK 3 S21: 0.1549 S22: -0.3024 S23: 0.1753 REMARK 3 S31: -0.4525 S32: 0.6112 S33: 0.0187 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 9 C 14 REMARK 3 ORIGIN FOR THE GROUP (A): 39.5606 -5.4582 -10.8275 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1872 REMARK 3 T33: 0.4279 T12: 0.0496 REMARK 3 T13: -0.0073 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 8.2284 L22: 7.1339 REMARK 3 L33: 4.2770 L12: 7.7335 REMARK 3 L13: 0.1586 L23: -0.1569 REMARK 3 S TENSOR REMARK 3 S11: -0.4121 S12: 0.3549 S13: 0.7511 REMARK 3 S21: -0.4314 S22: 0.2681 S23: 0.8332 REMARK 3 S31: -0.0482 S32: -0.1236 S33: 0.1440 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 16 D 30 REMARK 3 ORIGIN FOR THE GROUP (A): 52.2480 -11.2191 -12.0067 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.2291 REMARK 3 T33: 0.2589 T12: 0.0103 REMARK 3 T13: -0.0138 T23: 0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.0046 L22: 4.5269 REMARK 3 L33: 4.9252 L12: -0.5169 REMARK 3 L13: -2.8965 L23: 3.7573 REMARK 3 S TENSOR REMARK 3 S11: -0.1043 S12: 0.0405 S13: 0.2549 REMARK 3 S21: -0.2649 S22: 0.3650 S23: 0.0512 REMARK 3 S31: -0.0776 S32: 0.2164 S33: -0.2607 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 31 D 59 REMARK 3 ORIGIN FOR THE GROUP (A): 62.3532 -17.9916 -0.0374 REMARK 3 T TENSOR REMARK 3 T11: 0.3093 T22: 0.2159 REMARK 3 T33: 0.4636 T12: 0.0173 REMARK 3 T13: 0.0022 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.6074 L22: 0.8197 REMARK 3 L33: 0.9246 L12: -0.2131 REMARK 3 L13: 1.3153 L23: 0.3589 REMARK 3 S TENSOR REMARK 3 S11: 0.2163 S12: 0.1689 S13: -0.1401 REMARK 3 S21: -0.1119 S22: 0.0725 S23: -0.4170 REMARK 3 S31: 0.0893 S32: 0.1084 S33: -0.2887 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 60 D 72 REMARK 3 ORIGIN FOR THE GROUP (A): 64.9966 -23.0288 -0.7565 REMARK 3 T TENSOR REMARK 3 T11: 0.4007 T22: 0.3428 REMARK 3 T33: 0.4970 T12: 0.0138 REMARK 3 T13: 0.0551 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 3.4067 L22: 2.1295 REMARK 3 L33: 0.3980 L12: 0.4108 REMARK 3 L13: 1.1418 L23: -0.7812 REMARK 3 S TENSOR REMARK 3 S11: 0.1735 S12: 0.0773 S13: -0.4582 REMARK 3 S21: 0.3914 S22: -0.2871 S23: -0.7139 REMARK 3 S31: -0.0734 S32: 0.2177 S33: 0.1135 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 73 D 100 REMARK 3 ORIGIN FOR THE GROUP (A): 61.1464 -19.7189 1.2757 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: 0.2408 REMARK 3 T33: 0.4358 T12: 0.0781 REMARK 3 T13: 0.0219 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.9481 L22: 1.6188 REMARK 3 L33: 3.9207 L12: 0.5189 REMARK 3 L13: 1.1760 L23: 1.7014 REMARK 3 S TENSOR REMARK 3 S11: 0.3919 S12: 0.1012 S13: 0.0346 REMARK 3 S21: 0.3839 S22: -0.0027 S23: -0.2369 REMARK 3 S31: 0.0500 S32: 0.2618 S33: -0.3892 REMARK 3 REMARK 3 TLS GROUP : 17 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 101 D 145 REMARK 3 ORIGIN FOR THE GROUP (A): 50.4164 -12.9971 -0.0451 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.1463 REMARK 3 T33: 0.2171 T12: 0.0131 REMARK 3 T13: 0.0395 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 2.0514 L22: 2.0609 REMARK 3 L33: 2.0039 L12: 0.1529 REMARK 3 L13: 0.2662 L23: 0.9501 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.2789 S13: 0.0229 REMARK 3 S21: 0.1167 S22: 0.0152 S23: -0.0145 REMARK 3 S31: 0.0965 S32: 0.1114 S33: -0.0098 REMARK 3 REMARK 3 TLS GROUP : 18 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 146 D 185 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6227 -26.9243 -9.4255 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.1366 REMARK 3 T33: 0.3534 T12: 0.0767 REMARK 3 T13: -0.0316 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 2.2722 L22: 1.6830 REMARK 3 L33: 2.6709 L12: 0.9797 REMARK 3 L13: 0.4943 L23: -0.0617 REMARK 3 S TENSOR REMARK 3 S11: -0.0726 S12: -0.0627 S13: -0.5044 REMARK 3 S21: -0.1696 S22: -0.0840 S23: -0.2145 REMARK 3 S31: 0.3583 S32: 0.0766 S33: 0.1566 REMARK 3 REMARK 3 TLS GROUP : 19 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 186 D 229 REMARK 3 ORIGIN FOR THE GROUP (A): 44.9381 -20.4975 -7.2349 REMARK 3 T TENSOR REMARK 3 T11: 0.1208 T22: 0.1647 REMARK 3 T33: 0.1820 T12: 0.0282 REMARK 3 T13: 0.0118 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.8165 L22: 2.1772 REMARK 3 L33: 0.5854 L12: 0.8638 REMARK 3 L13: 0.2692 L23: 0.2136 REMARK 3 S TENSOR REMARK 3 S11: 0.1254 S12: 0.1070 S13: -0.0285 REMARK 3 S21: -0.2093 S22: -0.0398 S23: -0.1300 REMARK 3 S31: -0.0174 S32: -0.0902 S33: -0.0856 REMARK 3 REMARK 3 TLS GROUP : 20 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 230 D 245 REMARK 3 ORIGIN FOR THE GROUP (A): 49.6099 -17.7283 12.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.2155 T22: 0.6032 REMARK 3 T33: 0.3362 T12: -0.0602 REMARK 3 T13: 0.0188 T23: -0.0847 REMARK 3 L TENSOR REMARK 3 L11: 7.2540 L22: 9.7801 REMARK 3 L33: 6.4182 L12: 7.4467 REMARK 3 L13: 6.8195 L23: 6.1103 REMARK 3 S TENSOR REMARK 3 S11: 0.2965 S12: -0.4060 S13: -0.0816 REMARK 3 S21: 0.5179 S22: -0.0606 S23: -0.2737 REMARK 3 S31: 0.1552 S32: -0.1115 S33: -0.2359 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21611 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 40.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -0.200 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP FROM CCP4 REMARK 200 STARTING MODEL: 1SHH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA ACETATE PH 4.6 AND 25% PEG REMARK 280 8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.43750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.71875 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 71.15625 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2470 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14M REMARK 465 ARG A 15 REMARK 465 GLY B 246 REMARK 465 GLU B 247 REMARK 465 ARG C 15 REMARK 465 GLY D 246 REMARK 465 GLU D 247 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA D 132 CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 1B -164.63 49.40 REMARK 500 PHE A 7 -74.01 -126.50 REMARK 500 ILE A 14K -49.60 -132.69 REMARK 500 SER B 48 -159.00 -150.89 REMARK 500 HIS B 71 -60.02 -128.89 REMARK 500 ARG B 73 -28.46 -144.96 REMARK 500 GLU B 97A -59.52 -139.45 REMARK 500 SER B 115 -159.44 -136.51 REMARK 500 ASP B 125 -160.23 -113.85 REMARK 500 ALA B 149A 40.61 -96.05 REMARK 500 ASN B 149B -167.57 -162.17 REMARK 500 GLU B 186B -22.17 -163.96 REMARK 500 PHE B 204A -63.26 -92.40 REMARK 500 SER B 214 -72.84 -114.74 REMARK 500 ALA C 1B -149.08 61.68 REMARK 500 ASP C 1A 70.14 -100.65 REMARK 500 PHE C 7 -79.33 -125.77 REMARK 500 GLN D 38 99.40 -65.80 REMARK 500 SER D 48 -147.73 -152.26 REMARK 500 THR D 74 -45.37 67.62 REMARK 500 ILE D 79 -56.27 -120.84 REMARK 500 ASN D 95 79.67 -104.42 REMARK 500 GLU D 97A -55.69 -129.36 REMARK 500 LEU D 99 53.26 70.57 REMARK 500 TRP D 148 -33.11 83.66 REMARK 500 VAL D 149C 113.39 76.79 REMARK 500 ARG D 173 32.89 -97.14 REMARK 500 ASP D 186A -12.05 74.72 REMARK 500 GLU D 186B 5.26 -65.82 REMARK 500 VAL D 213 98.94 -53.49 REMARK 500 SER D 214 -81.68 -89.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG B 221A O REMARK 620 2 LYS B 224 O 73.8 REMARK 620 3 HOH B 509 O 84.1 94.2 REMARK 620 4 HOH B 516 O 79.5 57.6 150.4 REMARK 620 5 HOH B 517 O 132.9 81.5 138.0 53.4 REMARK 620 6 HOH B 529 O 108.5 173.8 91.8 116.7 93.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG D 221A O REMARK 620 2 LYS D 224 O 79.3 REMARK 620 N 1 REMARK 630 REMARK 630 MOLECULE TYPE: PEPTIDE-LIKE INHIBITOR REMARK 630 MOLECULE NAME: (2R,4R)-4-METHYL-1-(N~2~-{[(3S)-3-METHYL-1,2,3,4- REMARK 630 TETRAHYDROQUINOLIN-8-YL]SULFONYL}-L-ARGINYL)PIPERIDINE-2- REMARK 630 CARBOXYLIC ACID REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 15U B 402 REMARK 630 15U D 402 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: 15Y ARG MCP REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15U B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 15U D 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1SHH RELATED DB: PDB REMARK 900 SLOW FORM OF THROMBIN BOUND WITH PPACK REMARK 900 RELATED ID: 4HFY RELATED DB: PDB DBREF 4HFP A 1C 15 UNP P00734 THRB_HUMAN 333 363 DBREF 4HFP B 16 247 UNP P00734 THRB_HUMAN 364 622 DBREF 4HFP C 1C 15 UNP P00734 THRB_HUMAN 333 363 DBREF 4HFP D 16 247 UNP P00734 THRB_HUMAN 364 622 SEQADV 4HFP ALA B 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQADV 4HFP ALA D 195 UNP P00734 SER 568 ENGINEERED MUTATION SEQRES 1 A 31 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 A 31 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 A 31 TYR ILE ASP GLY ARG SEQRES 1 B 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 B 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 B 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 B 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 B 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 B 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 B 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 B 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 B 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 B 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 B 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 B 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 B 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 B 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 B 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 B 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 B 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 B 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 B 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 B 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU SEQRES 1 C 31 GLU ALA ASP CYS GLY LEU ARG PRO LEU PHE GLU LYS LYS SEQRES 2 C 31 SER LEU GLU ASP LYS THR GLU ARG GLU LEU LEU GLU SER SEQRES 3 C 31 TYR ILE ASP GLY ARG SEQRES 1 D 259 ILE VAL GLU GLY SER ASP ALA GLU ILE GLY MET SER PRO SEQRES 2 D 259 TRP GLN VAL MET LEU PHE ARG LYS SER PRO GLN GLU LEU SEQRES 3 D 259 LEU CYS GLY ALA SER LEU ILE SER ASP ARG TRP VAL LEU SEQRES 4 D 259 THR ALA ALA HIS CYS LEU LEU TYR PRO PRO TRP ASP LYS SEQRES 5 D 259 ASN PHE THR GLU ASN ASP LEU LEU VAL ARG ILE GLY LYS SEQRES 6 D 259 HIS SER ARG THR ARG TYR GLU ARG ASN ILE GLU LYS ILE SEQRES 7 D 259 SER MET LEU GLU LYS ILE TYR ILE HIS PRO ARG TYR ASN SEQRES 8 D 259 TRP ARG GLU ASN LEU ASP ARG ASP ILE ALA LEU MET LYS SEQRES 9 D 259 LEU LYS LYS PRO VAL ALA PHE SER ASP TYR ILE HIS PRO SEQRES 10 D 259 VAL CYS LEU PRO ASP ARG GLU THR ALA ALA SER LEU LEU SEQRES 11 D 259 GLN ALA GLY TYR LYS GLY ARG VAL THR GLY TRP GLY ASN SEQRES 12 D 259 LEU LYS GLU THR TRP THR ALA ASN VAL GLY LYS GLY GLN SEQRES 13 D 259 PRO SER VAL LEU GLN VAL VAL ASN LEU PRO ILE VAL GLU SEQRES 14 D 259 ARG PRO VAL CYS LYS ASP SER THR ARG ILE ARG ILE THR SEQRES 15 D 259 ASP ASN MET PHE CYS ALA GLY TYR LYS PRO ASP GLU GLY SEQRES 16 D 259 LYS ARG GLY ASP ALA CYS GLU GLY ASP ALA GLY GLY PRO SEQRES 17 D 259 PHE VAL MET LYS SER PRO PHE ASN ASN ARG TRP TYR GLN SEQRES 18 D 259 MET GLY ILE VAL SER TRP GLY GLU GLY CYS ASP ARG ASP SEQRES 19 D 259 GLY LYS TYR GLY PHE TYR THR HIS VAL PHE ARG LEU LYS SEQRES 20 D 259 LYS TRP ILE GLN LYS VAL ILE ASP GLN PHE GLY GLU HET NA B 401 1 HET 15U B 402 35 HET NA D 401 1 HET 15U D 402 35 HETNAM NA SODIUM ION HETNAM 15U (2R,4R)-4-METHYL-1-(N~2~-{[(3S)-3-METHYL-1,2,3,4- HETNAM 2 15U TETRAHYDROQUINOLIN-8-YL]SULFONYL}-L-ARGINYL) HETNAM 3 15U PIPERIDINE-2-CARBOXYLIC ACID HETSYN 15U S-ARGATROBAN FORMUL 5 NA 2(NA 1+) FORMUL 6 15U 2(C23 H36 N6 O5 S) FORMUL 9 HOH *66(H2 O) HELIX 1 1 THR A 14B SER A 14I 1 8 HELIX 2 2 PRO B 60B ASP B 60E 5 4 HELIX 3 3 ASP B 125 LEU B 130 1 9 HELIX 4 4 GLU B 164 SER B 171 1 8 HELIX 5 5 LEU B 234 PHE B 245 1 12 HELIX 6 6 THR C 14B GLU C 14H 1 7 HELIX 7 7 SER C 14I ILE C 14K 5 3 HELIX 8 8 ALA D 55 CYS D 58 5 4 HELIX 9 9 PRO D 60B ASP D 60E 5 4 HELIX 10 10 ASP D 125 LEU D 130 1 9 HELIX 11 11 GLU D 164 ASP D 170 1 7 HELIX 12 12 LEU D 234 PHE D 245 1 12 SHEET 1 A 7 SER B 20 ASP B 21 0 SHEET 2 A 7 GLN B 156 PRO B 161 -1 O VAL B 157 N SER B 20 SHEET 3 A 7 LYS B 135 GLY B 140 -1 N GLY B 136 O LEU B 160 SHEET 4 A 7 PRO B 198 LYS B 202 -1 O VAL B 200 N ARG B 137 SHEET 5 A 7 TRP B 207 TRP B 215 -1 O TYR B 208 N MET B 201 SHEET 6 A 7 GLY B 226 HIS B 230 -1 O PHE B 227 N TRP B 215 SHEET 7 A 7 MET B 180 ALA B 183 -1 N PHE B 181 O TYR B 228 SHEET 1 B 7 LYS B 81 SER B 83 0 SHEET 2 B 7 LEU B 64 ILE B 68 -1 N ILE B 68 O LYS B 81 SHEET 3 B 7 GLN B 30 ARG B 35 -1 N MET B 32 O ARG B 67 SHEET 4 B 7 GLU B 39 LEU B 46 -1 O GLU B 39 N ARG B 35 SHEET 5 B 7 TRP B 51 THR B 54 -1 O LEU B 53 N SER B 45 SHEET 6 B 7 ALA B 104 LEU B 108 -1 O ALA B 104 N THR B 54 SHEET 7 B 7 LEU B 85 ILE B 90 -1 N GLU B 86 O LYS B 107 SHEET 1 C 2 LEU B 60 TYR B 60A 0 SHEET 2 C 2 LYS B 60F ASN B 60G-1 O LYS B 60F N TYR B 60A SHEET 1 D 7 SER D 20 ASP D 21 0 SHEET 2 D 7 GLN D 156 PRO D 161 -1 O VAL D 157 N SER D 20 SHEET 3 D 7 LYS D 135 VAL D 138 -1 N GLY D 136 O LEU D 160 SHEET 4 D 7 PRO D 198 LYS D 202 -1 O VAL D 200 N ARG D 137 SHEET 5 D 7 TRP D 207 TRP D 215 -1 O TYR D 208 N MET D 201 SHEET 6 D 7 GLY D 226 HIS D 230 -1 O PHE D 227 N TRP D 215 SHEET 7 D 7 MET D 180 ALA D 183 -1 N PHE D 181 O TYR D 228 SHEET 1 E 7 LYS D 81 SER D 83 0 SHEET 2 E 7 LEU D 64 ILE D 68 -1 N ILE D 68 O LYS D 81 SHEET 3 E 7 GLN D 30 ARG D 35 -1 N MET D 32 O ARG D 67 SHEET 4 E 7 GLU D 39 LEU D 46 -1 O GLU D 39 N ARG D 35 SHEET 5 E 7 TRP D 51 THR D 54 -1 O LEU D 53 N SER D 45 SHEET 6 E 7 ALA D 104 LEU D 108 -1 O MET D 106 N VAL D 52 SHEET 7 E 7 LEU D 85 ILE D 90 -1 N TYR D 89 O LEU D 105 SHEET 1 F 2 LEU D 60 TYR D 60A 0 SHEET 2 F 2 LYS D 60F ASN D 60G-1 O LYS D 60F N TYR D 60A SSBOND 1 CYS A 1 CYS B 122 1555 1555 2.04 SSBOND 2 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 3 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 4 CYS B 191 CYS B 220 1555 1555 2.05 SSBOND 5 CYS C 1 CYS D 122 1555 1555 2.03 SSBOND 6 CYS D 42 CYS D 58 1555 1555 2.03 SSBOND 7 CYS D 168 CYS D 182 1555 1555 2.04 SSBOND 8 CYS D 191 CYS D 220 1555 1555 2.04 LINK O ARG B 221A NA NA B 401 1555 1555 2.88 LINK O LYS B 224 NA NA B 401 1555 1555 2.59 LINK NA NA B 401 O HOH B 509 1555 1555 3.00 LINK NA NA B 401 O HOH B 516 1555 1555 2.52 LINK NA NA B 401 O HOH B 517 1555 1555 3.12 LINK NA NA B 401 O HOH B 529 1555 1555 2.36 LINK O ARG D 221A NA NA D 401 1555 1555 2.63 LINK O LYS D 224 NA NA D 401 1555 1555 2.39 CISPEP 1 SER B 36A PRO B 37 0 -2.01 CISPEP 2 SER D 36A PRO D 37 0 -5.32 SITE 1 AC1 6 TYR B 184A ARG B 221A LYS B 224 HOH B 509 SITE 2 AC1 6 HOH B 516 HOH B 529 SITE 1 AC2 2 ARG D 221A LYS D 224 SITE 1 AC3 12 HIS B 57 TYR B 60A TRP B 60D LYS B 60F SITE 2 AC3 12 ASN B 149B ASP B 189 ALA B 190 GLU B 192 SITE 3 AC3 12 SER B 214 TRP B 215 GLY B 216 GLY B 219 SITE 1 AC4 13 HIS D 57 TYR D 60A TRP D 60D ASP D 189 SITE 2 AC4 13 ALA D 190 GLU D 192 VAL D 213 SER D 214 SITE 3 AC4 13 TRP D 215 GLY D 216 GLY D 219 GLY D 226 SITE 4 AC4 13 HOH D 521 CRYST1 77.229 77.229 94.875 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012949 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012949 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010540 0.00000