HEADER HYDROLASE 05-OCT-12 4HFQ TITLE CRYSTAL STRUCTURE OF UDP-X DIPHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MUTT/NUDIX FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 170187; SOURCE 4 STRAIN: TIGR4; SOURCE 5 GENE: SP1669, SP_1669; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-24A KEYWDS UDP-SUGAR DIPHOSPHATASE, NUDIX, HYDROLASE, RNA EXONUCLEASE, KEYWDS 2 PYROPHOSPHATASE, MUR PATHWAY EXPDTA X-RAY DIFFRACTION AUTHOR K.C.DUONG-LY,L.M.AMZEL,S.B.GABELLI REVDAT 2 28-FEB-24 4HFQ 1 REMARK REVDAT 1 07-AUG-13 4HFQ 0 JRNL AUTH K.C.DUONG-LY,H.N.WOO,C.A.DUNN,W.XU,A.BABIC,M.J.BESSMAN, JRNL AUTH 2 L.M.AMZEL,S.B.GABELLI JRNL TITL A UDP-X DIPHOSPHATASE FROM STREPTOCOCCUS PNEUMONIAE JRNL TITL 2 HYDROLYZES PRECURSORS OF PEPTIDOGLYCAN BIOSYNTHESIS. JRNL REF PLOS ONE V. 8 64241 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23691178 JRNL DOI 10.1371/JOURNAL.PONE.0064241 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 84088 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4437 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.39 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6230 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.48 REMARK 3 BIN R VALUE (WORKING SET) : 0.2660 REMARK 3 BIN FREE R VALUE SET COUNT : 306 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3306 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 167 REMARK 3 SOLVENT ATOMS : 509 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.09000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.14000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.038 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3756 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5063 ; 1.359 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 460 ; 5.492 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;33.287 ;25.368 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 671 ;11.302 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.709 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2837 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HFQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : KOHZU HLD-4 DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88640 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 67.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.49600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE 2.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS-TRIS, LI2SO4, PEG-3350, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.56800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.13600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: / REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 137 67.49 -157.23 REMARK 500 LEU A 153 -127.86 -113.02 REMARK 500 GLN B 137 64.03 -155.91 REMARK 500 LEU B 153 -130.53 -112.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 315 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 316 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 317 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TRS B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 313 DBREF 4HFQ A 1 203 UNP Q97PF7 Q97PF7_STRPN 1 203 DBREF 4HFQ B 1 203 UNP Q97PF7 Q97PF7_STRPN 1 203 SEQRES 1 A 203 MET LYS THR SER ASP PHE VAL LYS TYR LEU GLN ARG MET SEQRES 2 A 203 ILE ALA ILE THR ASP THR GLY LEU THR PHE THR LYS ASP SEQRES 3 A 203 PRO PHE ASP ARG GLU ARG TYR GLU ASP LEU ARG SER LEU SEQRES 4 A 203 LEU SER GLU MET LEU ASN GLN ALA SER ASP LEU ASP SER SEQRES 5 A 203 GLU GLU VAL ALA GLU VAL LEU LYS PRO THR SER ALA TYR SEQRES 6 A 203 ALA THR PRO LEU MET ASP VAL ARG ALA TRP ILE VAL GLU SEQRES 7 A 203 ASP GLU LYS ILE CYS LEU VAL ARG GLY GLN GLY GLU ASP SEQRES 8 A 203 SER TRP ALA LEU PRO GLY GLY PHE GLY GLU VAL GLY TYR SEQRES 9 A 203 SER PRO THR GLU ASN ILE LEU LYS GLU ILE GLU GLU GLU SEQRES 10 A 203 THR GLY PHE LYS ALA LYS VAL GLU ARG LEU LEU ALA VAL SEQRES 11 A 203 PHE ASP THR ASN ARG PHE GLN LEU GLN SER LYS GLN TYR SEQRES 12 A 203 THR LYS PHE VAL PHE GLY CYS LYS LEU LEU ASP GLY GLN SEQRES 13 A 203 PHE GLN GLU ASN GLN GLU ILE ALA ASP LEU GLN PHE PHE SEQRES 14 A 203 ALA ILE ASP GLN LEU PRO ASN LEU SER GLU LYS ARG ILE SEQRES 15 A 203 THR LYS GLU GLN ILE GLU LEU LEU TRP GLN VAL TYR GLN SEQRES 16 A 203 GLY HIS ARG GLY GLN TYR LEU ASP SEQRES 1 B 203 MET LYS THR SER ASP PHE VAL LYS TYR LEU GLN ARG MET SEQRES 2 B 203 ILE ALA ILE THR ASP THR GLY LEU THR PHE THR LYS ASP SEQRES 3 B 203 PRO PHE ASP ARG GLU ARG TYR GLU ASP LEU ARG SER LEU SEQRES 4 B 203 LEU SER GLU MET LEU ASN GLN ALA SER ASP LEU ASP SER SEQRES 5 B 203 GLU GLU VAL ALA GLU VAL LEU LYS PRO THR SER ALA TYR SEQRES 6 B 203 ALA THR PRO LEU MET ASP VAL ARG ALA TRP ILE VAL GLU SEQRES 7 B 203 ASP GLU LYS ILE CYS LEU VAL ARG GLY GLN GLY GLU ASP SEQRES 8 B 203 SER TRP ALA LEU PRO GLY GLY PHE GLY GLU VAL GLY TYR SEQRES 9 B 203 SER PRO THR GLU ASN ILE LEU LYS GLU ILE GLU GLU GLU SEQRES 10 B 203 THR GLY PHE LYS ALA LYS VAL GLU ARG LEU LEU ALA VAL SEQRES 11 B 203 PHE ASP THR ASN ARG PHE GLN LEU GLN SER LYS GLN TYR SEQRES 12 B 203 THR LYS PHE VAL PHE GLY CYS LYS LEU LEU ASP GLY GLN SEQRES 13 B 203 PHE GLN GLU ASN GLN GLU ILE ALA ASP LEU GLN PHE PHE SEQRES 14 B 203 ALA ILE ASP GLN LEU PRO ASN LEU SER GLU LYS ARG ILE SEQRES 15 B 203 THR LYS GLU GLN ILE GLU LEU LEU TRP GLN VAL TYR GLN SEQRES 16 B 203 GLY HIS ARG GLY GLN TYR LEU ASP HET EDO A 301 4 HET EDO A 302 4 HET TRS A 303 8 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET PEG A 307 7 HET EDO A 308 4 HET GOL A 309 6 HET PEG A 310 7 HET SO4 A 311 5 HET EDO A 312 4 HET PGE A 313 10 HET GOL A 314 6 HET GOL A 315 6 HET PEG A 316 7 HET EDO A 317 4 HET SO4 B 301 5 HET EDO B 302 4 HET GOL B 303 6 HET GOL B 304 6 HET TRS B 305 8 HET EDO B 306 4 HET TRS B 307 8 HET GOL B 308 6 HET EDO B 309 4 HET EDO B 310 4 HET EDO B 311 4 HET EDO B 312 4 HET PEG B 313 7 HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM SO4 SULFATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM GOL GLYCEROL HETNAM PGE TRIETHYLENE GLYCOL HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 EDO 11(C2 H6 O2) FORMUL 5 TRS 3(C4 H12 N O3 1+) FORMUL 6 SO4 5(O4 S 2-) FORMUL 9 PEG 4(C4 H10 O3) FORMUL 11 GOL 6(C3 H8 O3) FORMUL 15 PGE C6 H14 O4 FORMUL 33 HOH *509(H2 O) HELIX 1 1 LYS A 2 THR A 24 1 23 HELIX 2 2 ASP A 26 SER A 48 1 23 HELIX 3 3 ASP A 51 LYS A 60 1 10 HELIX 4 4 SER A 105 GLY A 119 1 15 HELIX 5 5 THR A 133 GLN A 137 1 5 HELIX 6 6 THR A 183 GLN A 195 1 13 HELIX 7 7 LYS B 2 THR B 24 1 23 HELIX 8 8 ASP B 26 GLN B 46 1 21 HELIX 9 9 ASP B 51 LYS B 60 1 10 HELIX 10 10 SER B 105 GLY B 119 1 15 HELIX 11 11 THR B 133 GLN B 137 1 5 HELIX 12 12 ALA B 170 LEU B 174 5 5 HELIX 13 13 THR B 183 GLN B 195 1 13 SHEET 1 A 5 GLY A 97 PHE A 99 0 SHEET 2 A 5 LEU A 69 TRP A 75 -1 N VAL A 72 O GLY A 98 SHEET 3 A 5 TYR A 143 GLY A 155 1 O PHE A 148 N TRP A 75 SHEET 4 A 5 PHE A 120 ASP A 132 -1 N PHE A 131 O LYS A 145 SHEET 5 A 5 TYR A 201 LEU A 202 1 O TYR A 201 N VAL A 130 SHEET 1 B 3 VAL A 77 GLU A 78 0 SHEET 2 B 3 LYS A 81 GLY A 87 -1 O LYS A 81 N GLU A 78 SHEET 3 B 3 TRP A 93 ALA A 94 -1 O ALA A 94 N VAL A 85 SHEET 1 C 3 VAL A 77 GLU A 78 0 SHEET 2 C 3 LYS A 81 GLY A 87 -1 O LYS A 81 N GLU A 78 SHEET 3 C 3 ILE A 163 ALA A 170 -1 O PHE A 169 N ILE A 82 SHEET 1 D 5 GLY B 97 PHE B 99 0 SHEET 2 D 5 LEU B 69 TRP B 75 -1 N VAL B 72 O GLY B 98 SHEET 3 D 5 TYR B 143 GLY B 155 1 O PHE B 148 N TRP B 75 SHEET 4 D 5 PHE B 120 ASP B 132 -1 N LYS B 121 O LEU B 153 SHEET 5 D 5 TYR B 201 LEU B 202 1 O TYR B 201 N VAL B 130 SHEET 1 E 3 VAL B 77 GLU B 78 0 SHEET 2 E 3 LYS B 81 GLY B 87 -1 O LYS B 81 N GLU B 78 SHEET 3 E 3 TRP B 93 ALA B 94 -1 O ALA B 94 N VAL B 85 SHEET 1 F 3 VAL B 77 GLU B 78 0 SHEET 2 F 3 LYS B 81 GLY B 87 -1 O LYS B 81 N GLU B 78 SHEET 3 F 3 ILE B 163 PHE B 169 -1 O GLN B 167 N LEU B 84 CISPEP 1 LYS B 60 PRO B 61 0 -0.16 SITE 1 AC1 6 LEU A 177 SER A 178 GLU A 179 LYS A 180 SITE 2 AC1 6 PEG A 310 HOH A 464 SITE 1 AC2 3 ASP A 5 TYR A 9 HOH A 632 SITE 1 AC3 10 ASP A 71 ARG A 73 GLN A 139 TYR A 143 SITE 2 AC3 10 LYS A 145 LYS A 180 ARG A 181 HOH A 427 SITE 3 AC3 10 HOH A 578 PRO B 61 SITE 1 AC4 9 ARG A 73 VAL A 85 GLY A 97 GLU A 117 SITE 2 AC4 9 GLU A 162 ARG A 181 HOH A 430 HOH A 442 SITE 3 AC4 9 HOH A 593 SITE 1 AC5 8 ARG A 86 TRP A 191 GLN A 192 GLN A 195 SITE 2 AC5 8 HIS A 197 HOH A 413 HOH A 616 HOH A 617 SITE 1 AC6 6 GLU A 101 TYR A 104 LYS A 112 LYS B 8 SITE 2 AC6 6 ARG B 12 HOH B 509 SITE 1 AC7 8 LEU A 111 LYS A 112 GLU A 115 LYS A 121 SITE 2 AC7 8 ALA A 122 HOH A 445 HOH A 446 HOH A 470 SITE 1 AC8 4 LYS A 8 ASN A 134 HOH A 420 HOH B 571 SITE 1 AC9 7 ARG A 135 ASP A 203 HOH A 438 HOH A 605 SITE 2 AC9 7 HOH A 633 SER B 105 GLU B 108 SITE 1 BC1 8 ASN A 176 LEU A 177 GLU A 179 LYS A 184 SITE 2 BC1 8 EDO A 301 HOH A 414 HOH A 462 HOH A 629 SITE 1 BC2 5 LYS A 2 THR A 3 SER A 4 HOH A 498 SITE 2 BC2 5 HOH A 508 SITE 1 BC3 7 ALA A 66 HOH A 429 HOH A 485 HOH A 511 SITE 2 BC3 7 PHE B 99 GLY B 100 GLU B 101 SITE 1 BC4 14 THR A 62 SER A 63 TYR A 65 ALA A 66 SITE 2 BC4 14 THR A 67 LEU A 69 LYS A 141 GLN A 142 SITE 3 BC4 14 HOH A 412 HOH A 416 HOH A 502 HOH A 584 SITE 4 BC4 14 LEU B 69 VAL B 102 SITE 1 BC5 9 SER A 63 VAL A 102 HOH A 507 ALA B 15 SITE 2 BC5 9 LEU B 69 LYS B 141 GLN B 142 HOH B 415 SITE 3 BC5 9 HOH B 441 SITE 1 BC6 7 GLU A 78 PHE A 120 LEU A 152 PHE A 168 SITE 2 BC6 7 HOH A 532 HOH A 534 HOH A 590 SITE 1 BC7 6 ASP A 91 TRP A 93 GLN A 167 ASN A 176 SITE 2 BC7 6 EDO A 317 HOH A 408 SITE 1 BC8 7 ASP A 91 ASN A 176 LEU A 189 GLN A 192 SITE 2 BC8 7 ARG A 198 PEG A 316 HOH A 408 SITE 1 BC9 6 GLN B 139 SER B 140 LYS B 180 EDO B 302 SITE 2 BC9 6 HOH B 432 HOH B 461 SITE 1 CC1 5 ASN B 45 LEU B 138 SO4 B 301 HOH B 528 SITE 2 CC1 5 HOH B 530 SITE 1 CC2 9 ARG B 73 GLN B 139 TYR B 143 LYS B 145 SITE 2 CC2 9 LYS B 180 ARG B 181 TRS B 305 HOH B 477 SITE 3 CC2 9 HOH B 626 SITE 1 CC3 7 GLU B 78 PHE B 120 PHE B 168 HOH B 438 SITE 2 CC3 7 HOH B 534 HOH B 543 HOH B 640 SITE 1 CC4 11 ARG B 73 GLY B 97 GLU B 117 GLU B 162 SITE 2 CC4 11 ILE B 163 ARG B 181 GOL B 303 HOH B 439 SITE 3 CC4 11 HOH B 477 HOH B 596 HOH B 633 SITE 1 CC5 9 PRO A 68 LEU A 69 MET A 70 THR A 144 SITE 2 CC5 9 PRO B 68 MET B 70 THR B 144 PHE B 146 SITE 3 CC5 9 HOH B 544 SITE 1 CC6 8 LYS A 123 LEU B 177 SER B 178 GLU B 179 SITE 2 CC6 8 LYS B 180 HOH B 559 HOH B 604 HOH B 615 SITE 1 CC7 8 ARG A 12 GLU B 31 ASP B 35 GLU B 101 SITE 2 CC7 8 LYS B 112 GLU B 116 HOH B 417 HOH B 525 SITE 1 CC8 5 LEU A 21 THR A 22 HOH B 446 HOH B 618 SITE 2 CC8 5 HOH B 620 SITE 1 CC9 7 ARG A 30 HOH A 441 THR B 24 LYS B 25 SITE 2 CC9 7 PRO B 27 ARG B 30 HOH B 516 SITE 1 DC1 4 LEU B 202 PEG B 313 HOH B 542 HOH B 643 SITE 1 DC2 6 ARG B 86 TRP B 93 GLY B 196 ARG B 198 SITE 2 DC2 6 GLY B 199 HOH B 428 SITE 1 DC3 10 LEU B 174 PRO B 175 ARG B 198 GLY B 199 SITE 2 DC3 10 GLN B 200 TYR B 201 LEU B 202 EDO B 311 SITE 3 DC3 10 HOH B 440 HOH B 567 CRYST1 77.992 77.992 64.704 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012822 0.007403 0.000000 0.00000 SCALE2 0.000000 0.014805 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015455 0.00000