HEADER HYDROLASE 07-OCT-12 4HG9 TITLE CRYSTAL STRUCTURE OF AHV_BPA, A BASIC PLA2 FROM AGKISTRODON HALYS TITLE 2 PALLAS VENOM COMPND MOL_ID: 1; COMPND 2 MOLECULE: BASIC PHOSPHOLIPASE A2 B; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 17-138; COMPND 5 SYNONYM: SVPLA2, BPLA(2), PHOSPHATIDYLCHOLINE 2-ACYLHYDROLASE; COMPND 6 EC: 3.1.1.4 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLOYDIUS HALYS; SOURCE 3 ORGANISM_COMMON: CHINESE WATER MOCCASIN; SOURCE 4 ORGANISM_TAXID: 8714 KEYWDS ALPHA-HELIX, GLYCEROPHOSPHOLIPID, VENOM GLAND, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.ZENG,L.NIU,X.LI,M.TENG REVDAT 3 20-SEP-23 4HG9 1 REMARK SEQADV LINK REVDAT 2 16-APR-14 4HG9 1 SOURCE REVDAT 1 17-OCT-12 4HG9 0 JRNL AUTH F.ZENG,L.NIU,X.LI,M.TENG JRNL TITL CRYSTAL STRUCTURE OF AHV_BPA, A BASIC PLA2 FROM AGKISTRODON JRNL TITL 2 HALYS PALLAS VENOM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 62978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 5322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4102 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 359 REMARK 3 BIN FREE R VALUE : 0.2550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3744 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 393 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.53000 REMARK 3 B22 (A**2) : -1.40000 REMARK 3 B33 (A**2) : 1.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3986 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5385 ; 1.219 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 498 ; 5.050 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;31.109 ;23.677 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;12.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.743 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 527 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3003 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2460 ; 2.149 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3932 ; 3.833 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1526 ; 3.527 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1453 ; 5.650 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3986 ; 1.948 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HG9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075428. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BSRF REMARK 200 BEAMLINE : 3W1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 68360 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.34300 REMARK 200 R SYM FOR SHELL (I) : 0.32900 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1JIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% MPEG5000, 0.1 M SODIUM CITRATE, PH REMARK 280 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 49.47650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.97950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 49.47650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.97950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 389 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 53 CG CD OE1 OE2 REMARK 470 LYS A 54 CE NZ REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 LYS A 132 CG CD CE NZ REMARK 470 LEU B 2 CD1 CD2 REMARK 470 LEU B 3 CD1 REMARK 470 LYS B 7 CE NZ REMARK 470 LYS B 11 CD CE NZ REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 53 CD OE1 OE2 REMARK 470 LYS B 54 CE NZ REMARK 470 LYS B 78 CG CD CE NZ REMARK 470 ASP B 81 CG OD1 OD2 REMARK 470 ASP B 88 CG OD1 OD2 REMARK 470 LYS B 132 CG CD CE NZ REMARK 470 SER C 31 CB OG REMARK 470 GLU C 53 OE1 OE2 REMARK 470 LYS C 54 CE NZ REMARK 470 LYS C 78 CD CE NZ REMARK 470 LYS C 111 CG CD CE NZ REMARK 470 LYS C 115 CD CE NZ REMARK 470 ARG C 116 CZ NH1 NH2 REMARK 470 LYS C 129 CG CD CE NZ REMARK 470 LYS C 132 CG CD CE NZ REMARK 470 LYS D 7 CD CE NZ REMARK 470 LYS D 10 CE NZ REMARK 470 LYS D 11 CD CE NZ REMARK 470 ARG D 34 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS D 54 CD CE NZ REMARK 470 LYS D 78 CG CD CE NZ REMARK 470 ASP D 81 OD1 OD2 REMARK 470 LYS D 114 CD CE NZ REMARK 470 ARG D 116 CZ NH1 NH2 REMARK 470 ASP D 122 CG OD1 OD2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 31 -136.37 36.32 REMARK 500 SER C 31 -146.26 44.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 28 O REMARK 620 2 GLY A 30 O 91.3 REMARK 620 3 GLY A 32 O 107.6 99.7 REMARK 620 4 ASP A 49 OD2 95.3 169.6 70.6 REMARK 620 5 ASP A 49 OD1 104.5 139.8 109.8 45.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR B 28 O REMARK 620 2 GLY B 30 O 84.7 REMARK 620 3 GLY B 32 O 103.8 86.7 REMARK 620 4 ASP B 49 OD2 94.7 175.8 89.4 REMARK 620 5 ASP B 49 OD1 92.7 140.9 131.3 43.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR C 28 O REMARK 620 2 GLY C 30 O 88.6 REMARK 620 3 GLY C 32 O 106.6 83.4 REMARK 620 4 ASP C 49 OD2 91.0 170.7 87.8 REMARK 620 5 ASP C 49 OD1 100.0 141.3 128.3 47.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR D 28 O REMARK 620 2 GLY D 30 O 92.9 REMARK 620 3 GLY D 32 O 100.5 92.6 REMARK 620 4 ASP D 49 OD2 94.8 168.9 93.8 REMARK 620 5 ASP D 49 OD1 101.1 122.5 137.3 48.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 201 DBREF 4HG9 A 1 133 UNP O42187 PA2BB_GLOHA 17 138 DBREF 4HG9 B 1 133 UNP O42187 PA2BB_GLOHA 17 138 DBREF 4HG9 C 1 133 UNP O42187 PA2BB_GLOHA 17 138 DBREF 4HG9 D 1 133 UNP O42187 PA2BB_GLOHA 17 138 SEQADV 4HG9 HIS A 1 UNP O42187 SER 17 CONFLICT SEQADV 4HG9 VAL A 55 UNP O42187 LEU 70 CONFLICT SEQADV 4HG9 ASP A 79 UNP O42187 ASN 86 CONFLICT SEQADV 4HG9 ASP A 81 UNP O42187 THR 88 CONFLICT SEQADV 4HG9 ALA A 119 UNP O42187 THR 125 CONFLICT SEQADV 4HG9 ASP A 122 UNP O42187 ASN 128 CONFLICT SEQADV 4HG9 HIS B 1 UNP O42187 SER 17 CONFLICT SEQADV 4HG9 VAL B 55 UNP O42187 LEU 70 CONFLICT SEQADV 4HG9 ASP B 79 UNP O42187 ASN 86 CONFLICT SEQADV 4HG9 ASP B 81 UNP O42187 THR 88 CONFLICT SEQADV 4HG9 ALA B 119 UNP O42187 THR 125 CONFLICT SEQADV 4HG9 ASP B 122 UNP O42187 ASN 128 CONFLICT SEQADV 4HG9 HIS C 1 UNP O42187 SER 17 CONFLICT SEQADV 4HG9 VAL C 55 UNP O42187 LEU 70 CONFLICT SEQADV 4HG9 ASP C 79 UNP O42187 ASN 86 CONFLICT SEQADV 4HG9 ASP C 81 UNP O42187 THR 88 CONFLICT SEQADV 4HG9 ALA C 119 UNP O42187 THR 125 CONFLICT SEQADV 4HG9 ASP C 122 UNP O42187 ASN 128 CONFLICT SEQADV 4HG9 HIS D 1 UNP O42187 SER 17 CONFLICT SEQADV 4HG9 VAL D 55 UNP O42187 LEU 70 CONFLICT SEQADV 4HG9 ASP D 79 UNP O42187 ASN 86 CONFLICT SEQADV 4HG9 ASP D 81 UNP O42187 THR 88 CONFLICT SEQADV 4HG9 ALA D 119 UNP O42187 THR 125 CONFLICT SEQADV 4HG9 ASP D 122 UNP O42187 ASN 128 CONFLICT SEQRES 1 A 122 HIS LEU LEU GLN PHE ARG LYS MET ILE LYS LYS MET THR SEQRES 2 A 122 GLY LYS GLU PRO VAL VAL SER TYR ALA PHE TYR GLY CYS SEQRES 3 A 122 TYR CYS GLY SER GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 A 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLU SEQRES 5 A 122 LYS VAL THR GLY CYS ASP PRO LYS TRP ASP ASP TYR THR SEQRES 6 A 122 TYR SER TRP LYS ASP GLY ASP ILE VAL CYS GLY GLY ASP SEQRES 7 A 122 ASP PRO CYS LYS LYS GLU VAL CYS GLU CYS ASP LYS ALA SEQRES 8 A 122 ALA ALA ILE CYS PHE ARG ASP ASN LEU LYS THR TYR LYS SEQRES 9 A 122 LYS ARG TYR MET ALA TYR PRO ASP ILE LEU CYS SER SER SEQRES 10 A 122 LYS SER GLU LYS CYS SEQRES 1 B 122 HIS LEU LEU GLN PHE ARG LYS MET ILE LYS LYS MET THR SEQRES 2 B 122 GLY LYS GLU PRO VAL VAL SER TYR ALA PHE TYR GLY CYS SEQRES 3 B 122 TYR CYS GLY SER GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 B 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLU SEQRES 5 B 122 LYS VAL THR GLY CYS ASP PRO LYS TRP ASP ASP TYR THR SEQRES 6 B 122 TYR SER TRP LYS ASP GLY ASP ILE VAL CYS GLY GLY ASP SEQRES 7 B 122 ASP PRO CYS LYS LYS GLU VAL CYS GLU CYS ASP LYS ALA SEQRES 8 B 122 ALA ALA ILE CYS PHE ARG ASP ASN LEU LYS THR TYR LYS SEQRES 9 B 122 LYS ARG TYR MET ALA TYR PRO ASP ILE LEU CYS SER SER SEQRES 10 B 122 LYS SER GLU LYS CYS SEQRES 1 C 122 HIS LEU LEU GLN PHE ARG LYS MET ILE LYS LYS MET THR SEQRES 2 C 122 GLY LYS GLU PRO VAL VAL SER TYR ALA PHE TYR GLY CYS SEQRES 3 C 122 TYR CYS GLY SER GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 C 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLU SEQRES 5 C 122 LYS VAL THR GLY CYS ASP PRO LYS TRP ASP ASP TYR THR SEQRES 6 C 122 TYR SER TRP LYS ASP GLY ASP ILE VAL CYS GLY GLY ASP SEQRES 7 C 122 ASP PRO CYS LYS LYS GLU VAL CYS GLU CYS ASP LYS ALA SEQRES 8 C 122 ALA ALA ILE CYS PHE ARG ASP ASN LEU LYS THR TYR LYS SEQRES 9 C 122 LYS ARG TYR MET ALA TYR PRO ASP ILE LEU CYS SER SER SEQRES 10 C 122 LYS SER GLU LYS CYS SEQRES 1 D 122 HIS LEU LEU GLN PHE ARG LYS MET ILE LYS LYS MET THR SEQRES 2 D 122 GLY LYS GLU PRO VAL VAL SER TYR ALA PHE TYR GLY CYS SEQRES 3 D 122 TYR CYS GLY SER GLY GLY ARG GLY LYS PRO LYS ASP ALA SEQRES 4 D 122 THR ASP ARG CYS CYS PHE VAL HIS ASP CYS CYS TYR GLU SEQRES 5 D 122 LYS VAL THR GLY CYS ASP PRO LYS TRP ASP ASP TYR THR SEQRES 6 D 122 TYR SER TRP LYS ASP GLY ASP ILE VAL CYS GLY GLY ASP SEQRES 7 D 122 ASP PRO CYS LYS LYS GLU VAL CYS GLU CYS ASP LYS ALA SEQRES 8 D 122 ALA ALA ILE CYS PHE ARG ASP ASN LEU LYS THR TYR LYS SEQRES 9 D 122 LYS ARG TYR MET ALA TYR PRO ASP ILE LEU CYS SER SER SEQRES 10 D 122 LYS SER GLU LYS CYS HET CA A 201 1 HET CIT A 202 13 HET CIT A 203 13 HET G3P A 204 10 HET CA B 201 1 HET GOL B 202 6 HET CA C 201 1 HET G3P C 202 10 HET GOL C 203 6 HET GOL C 204 6 HET CA D 201 1 HETNAM CA CALCIUM ION HETNAM CIT CITRIC ACID HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 CA 4(CA 2+) FORMUL 6 CIT 2(C6 H8 O7) FORMUL 8 G3P 2(C3 H9 O6 P) FORMUL 10 GOL 3(C3 H8 O3) FORMUL 16 HOH *393(H2 O) HELIX 1 1 HIS A 1 GLY A 14 1 14 HELIX 2 2 GLU A 17 TYR A 22 1 6 HELIX 3 3 ASP A 39 VAL A 55 1 17 HELIX 4 4 ASP A 89 ASN A 109 1 21 HELIX 5 5 LEU A 110 TYR A 113 5 4 HELIX 6 6 LYS A 114 MET A 118 5 5 HELIX 7 7 PRO A 121 CYS A 126 5 5 HELIX 8 8 LEU B 2 GLY B 14 1 13 HELIX 9 9 GLU B 17 ALA B 23 1 7 HELIX 10 10 ASP B 39 VAL B 55 1 17 HELIX 11 11 ASP B 89 ASN B 109 1 21 HELIX 12 12 LEU B 110 TYR B 113 5 4 HELIX 13 13 LYS B 114 MET B 118 5 5 HELIX 14 14 PRO B 121 CYS B 126 5 5 HELIX 15 15 LEU C 2 GLY C 14 1 13 HELIX 16 16 GLU C 17 TYR C 22 1 6 HELIX 17 17 ASP C 39 VAL C 55 1 17 HELIX 18 18 ASP C 89 ASN C 109 1 21 HELIX 19 19 LEU C 110 TYR C 113 5 4 HELIX 20 20 LYS C 114 MET C 118 5 5 HELIX 21 21 PRO C 121 CYS C 126 5 5 HELIX 22 22 LEU D 2 GLY D 14 1 13 HELIX 23 23 GLU D 17 ALA D 23 1 7 HELIX 24 24 ASP D 39 VAL D 55 1 17 HELIX 25 25 ASP D 89 ASN D 109 1 21 HELIX 26 26 LEU D 110 TYR D 113 5 4 HELIX 27 27 LYS D 114 MET D 118 5 5 HELIX 28 28 PRO D 121 CYS D 126 5 5 SHEET 1 A 2 TYR A 75 LYS A 78 0 SHEET 2 A 2 ASP A 81 CYS A 84 -1 O VAL A 83 N SER A 76 SHEET 1 B 2 TYR B 75 LYS B 78 0 SHEET 2 B 2 ASP B 81 CYS B 84 -1 O VAL B 83 N SER B 76 SHEET 1 C 2 TYR C 75 LYS C 78 0 SHEET 2 C 2 ASP C 81 CYS C 84 -1 O VAL C 83 N SER C 76 SHEET 1 D 2 TYR D 75 LYS D 78 0 SHEET 2 D 2 ASP D 81 CYS D 84 -1 O VAL D 83 N SER D 76 SSBOND 1 CYS A 27 CYS A 126 1555 1555 2.06 SSBOND 2 CYS A 29 CYS A 45 1555 1555 2.00 SSBOND 3 CYS A 44 CYS A 105 1555 1555 2.07 SSBOND 4 CYS A 50 CYS A 133 1555 1555 2.02 SSBOND 5 CYS A 51 CYS A 98 1555 1555 2.05 SSBOND 6 CYS A 61 CYS A 91 1555 1555 2.06 SSBOND 7 CYS A 84 CYS A 96 1555 1555 2.05 SSBOND 8 CYS B 27 CYS B 126 1555 1555 2.05 SSBOND 9 CYS B 29 CYS B 45 1555 1555 2.06 SSBOND 10 CYS B 44 CYS B 105 1555 1555 2.06 SSBOND 11 CYS B 50 CYS B 133 1555 1555 2.02 SSBOND 12 CYS B 51 CYS B 98 1555 1555 2.02 SSBOND 13 CYS B 61 CYS B 91 1555 1555 2.06 SSBOND 14 CYS B 84 CYS B 96 1555 1555 2.06 SSBOND 15 CYS C 27 CYS C 126 1555 1555 2.06 SSBOND 16 CYS C 29 CYS C 45 1555 1555 2.03 SSBOND 17 CYS C 44 CYS C 105 1555 1555 2.03 SSBOND 18 CYS C 50 CYS C 133 1555 1555 2.03 SSBOND 19 CYS C 51 CYS C 98 1555 1555 2.03 SSBOND 20 CYS C 61 CYS C 91 1555 1555 2.07 SSBOND 21 CYS C 84 CYS C 96 1555 1555 2.08 SSBOND 22 CYS D 27 CYS D 126 1555 1555 2.05 SSBOND 23 CYS D 29 CYS D 45 1555 1555 2.05 SSBOND 24 CYS D 44 CYS D 105 1555 1555 2.05 SSBOND 25 CYS D 50 CYS D 133 1555 1555 2.03 SSBOND 26 CYS D 51 CYS D 98 1555 1555 2.04 SSBOND 27 CYS D 61 CYS D 91 1555 1555 2.07 SSBOND 28 CYS D 84 CYS D 96 1555 1555 2.06 LINK O TYR A 28 CA CA A 201 1555 1555 2.32 LINK O GLY A 30 CA CA A 201 1555 1555 2.42 LINK O GLY A 32 CA CA A 201 1555 1555 2.22 LINK OD2 ASP A 49 CA CA A 201 1555 1555 2.55 LINK OD1 ASP A 49 CA CA A 201 1555 1555 3.01 LINK O TYR B 28 CA CA B 201 1555 1555 2.29 LINK O GLY B 30 CA CA B 201 1555 1555 2.46 LINK O GLY B 32 CA CA B 201 1555 1555 2.19 LINK OD2 ASP B 49 CA CA B 201 1555 1555 2.45 LINK OD1 ASP B 49 CA CA B 201 1555 1555 3.18 LINK O TYR C 28 CA CA C 201 1555 1555 2.30 LINK O GLY C 30 CA CA C 201 1555 1555 2.48 LINK O GLY C 32 CA CA C 201 1555 1555 2.22 LINK OD2 ASP C 49 CA CA C 201 1555 1555 2.47 LINK OD1 ASP C 49 CA CA C 201 1555 1555 2.91 LINK O TYR D 28 CA CA D 201 1555 1555 2.28 LINK O GLY D 30 CA CA D 201 1555 1555 2.28 LINK O GLY D 32 CA CA D 201 1555 1555 2.27 LINK OD2 ASP D 49 CA CA D 201 1555 1555 2.38 LINK OD1 ASP D 49 CA CA D 201 1555 1555 2.91 SITE 1 AC1 4 TYR A 28 GLY A 30 GLY A 32 ASP A 49 SITE 1 AC2 9 ARG A 6 LYS A 7 LYS A 10 HOH A 307 SITE 2 AC2 9 HOH A 360 HIS C 1 LEU C 3 LYS C 7 SITE 3 AC2 9 ASP C 72 SITE 1 AC3 10 HIS A 1 LEU A 3 LYS A 7 ASP A 72 SITE 2 AC3 10 HOH A 307 HOH A 336 HOH A 378 ARG C 6 SITE 3 AC3 10 LYS C 7 LYS C 10 SITE 1 AC4 2 PHE A 5 GLY A 30 SITE 1 AC5 4 TYR B 28 GLY B 30 GLY B 32 ASP B 49 SITE 1 AC6 5 ARG B 6 PRO B 18 TYR B 22 ALA B 23 SITE 2 AC6 5 HOH B 347 SITE 1 AC7 4 TYR C 28 GLY C 30 GLY C 32 ASP C 49 SITE 1 AC8 4 LEU C 2 PHE C 5 GLY C 30 HIS C 48 SITE 1 AC9 3 PRO C 37 ASP C 39 ARG C 43 SITE 1 BC1 7 ALA C 101 CYS C 105 HOH C 306 HOH C 332 SITE 2 BC1 7 HOH C 348 HOH C 358 HOH C 364 SITE 1 BC2 4 TYR D 28 GLY D 30 GLY D 32 ASP D 49 CRYST1 98.953 53.959 108.433 90.00 111.48 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010106 0.000000 0.003977 0.00000 SCALE2 0.000000 0.018533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009911 0.00000