HEADER ISOMERASE 09-OCT-12 4HGX TITLE CRYSTAL STRUCTURE OF XYLOSE ISOMERASE DOMAIN CONTAINING PROTEIN TITLE 2 (STM4435) FROM SALMONELLA TYPHIMURIUM LT2 WITH UNKNOWN LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE DOMAIN CONTAINING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR SOURCE 3 TYPHIMURIUM; SOURCE 4 ORGANISM_TAXID: 99287; SOURCE 5 STRAIN: LT2; SOURCE 6 GENE: STM4435; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: ROSETTA DE3; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-24 KEYWDS XYLOSE ISOMERASE DOMAIN, UNKNOWN LIGAND, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.BOYKO,M.A.GORBACHEVA,D.A.KORZHENEVSKIY,P.V.DOROVATOVSKY, AUTHOR 2 T.V.RAKITINA,A.V.LIPKIN,I.A.SHUMILIN,W.MINOR,V.O.POPOV REVDAT 3 20-SEP-23 4HGX 1 REMARK REVDAT 2 13-APR-22 4HGX 1 AUTHOR JRNL REMARK LINK REVDAT 1 24-OCT-12 4HGX 0 JRNL AUTH K.M.BOYKO,M.A.GORBACHEVA,D.A.KORZHENEVSKIY,P.V.DOROVATOVSKY, JRNL AUTH 2 T.V.RAKITINA,A.V.LIPKIN,I.A.SHUMILIN,W.MINOR,V.O.POPOV JRNL TITL CRYSTAL STRUCTURE OF XYLOSE ISOMERASE DOMAIN CONTAINING JRNL TITL 2 PROTEIN (STM4435) FROM SALMONELLA TYPHIMURIUM LT2 WITH JRNL TITL 3 UNKNOWN LIGAND JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 17477 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 883 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4167 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 105 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.16000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.407 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.304 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.299 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4253 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5762 ; 2.276 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ; 9.238 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;39.594 ;24.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 703 ;20.037 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;21.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 662 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3245 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075452. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : KURCHATOV SNC REMARK 200 BEAMLINE : K4.4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.985 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NON REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17523 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.15900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.63100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.970 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2Q02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01M COBALT(II) CHLORIDE HEXAHYDRATE, REMARK 280 0.1M MES MONOHYDRATE PH 6.5, 1.8M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.60500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.59000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.59000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 93.90750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.59000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.59000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 31.30250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.59000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 93.90750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.59000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.30250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.60500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 270 REMARK 465 LEU A 271 REMARK 465 GLN A 272 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 6 CG CD CE NZ REMARK 470 ILE A 15 CD1 REMARK 470 ARG A 26 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 29 CG CD CE NZ REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 31 CG CD1 CD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 179 CG CD OE1 OE2 REMARK 470 GLU A 181 OE1 OE2 REMARK 470 LYS A 182 CG CD CE NZ REMARK 470 GLU A 183 CG CD OE1 OE2 REMARK 470 SER A 191 OG REMARK 470 THR A 204 OG1 CG2 REMARK 470 ARG A 205 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 208 CG CD OE1 OE2 REMARK 470 LEU A 210 CG CD1 CD2 REMARK 470 ASP A 212 CG OD1 OD2 REMARK 470 ILE A 216 CG1 CG2 CD1 REMARK 470 SER A 219 OG REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 TYR A 227 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 LEU A 233 CG CD1 CD2 REMARK 470 GLN A 250 CG CD OE1 NE2 REMARK 470 LEU A 251 CG CD1 CD2 REMARK 470 SER A 253 OG REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 265 CG CD NE CZ NH1 NH2 REMARK 470 SER A 266 OG REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 LYS B 6 CG CD CE NZ REMARK 470 GLU B 258 CG CD OE1 OE2 REMARK 470 GLU B 261 CG CD OE1 OE2 REMARK 470 ARG B 265 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE1 TRP A 153 O HOH A 421 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 197 CG HIS A 197 CD2 0.055 REMARK 500 TRP B 254 CE2 TRP B 254 CD2 0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 77 N - CA - CB ANGL. DEV. = -12.1 DEGREES REMARK 500 ASP B 50 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASN B 77 N - CA - CB ANGL. DEV. = -11.0 DEGREES REMARK 500 ARG B 100 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU B 169 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG B 187 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 187 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 205 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 5 18.07 -68.70 REMARK 500 LYS A 6 -58.09 67.83 REMARK 500 LEU A 27 -90.46 -55.98 REMARK 500 VAL A 28 153.63 -34.29 REMARK 500 LYS A 29 -74.47 83.69 REMARK 500 GLU A 32 -65.46 113.11 REMARK 500 PRO A 43 -38.62 -39.31 REMARK 500 ASP A 49 -152.07 37.65 REMARK 500 ASP A 50 -12.36 -46.74 REMARK 500 LEU A 51 -177.26 -69.32 REMARK 500 ASN A 77 -30.91 -32.02 REMARK 500 ASP A 109 22.42 -141.46 REMARK 500 GLU A 181 107.41 70.98 REMARK 500 GLU A 183 -28.38 -154.41 REMARK 500 PHE A 184 -171.60 -68.45 REMARK 500 ALA A 185 -64.90 92.02 REMARK 500 ALA A 209 52.44 -148.93 REMARK 500 MET A 217 -157.08 -89.07 REMARK 500 SER A 219 158.97 177.42 REMARK 500 ASN A 235 -34.18 -35.78 REMARK 500 PHE A 247 -84.75 -109.54 REMARK 500 SER A 248 144.54 24.40 REMARK 500 LEU A 251 15.45 -62.20 REMARK 500 SER A 253 -135.83 -70.70 REMARK 500 TRP A 254 90.69 59.23 REMARK 500 GLU A 256 -18.67 -48.24 REMARK 500 ARG A 265 -65.10 -29.70 REMARK 500 VAL A 267 38.09 86.01 REMARK 500 ASN B 34 19.30 -140.04 REMARK 500 ASP B 49 -119.98 47.20 REMARK 500 LEU B 79 70.20 -109.45 REMARK 500 ASN B 108 53.59 -147.48 REMARK 500 ASP B 109 22.71 -143.63 REMARK 500 GLU B 178 21.00 -75.98 REMARK 500 ILE B 188 138.36 -38.04 REMARK 500 THR B 207 -54.71 -12.60 REMARK 500 ILE B 216 -149.18 -118.64 REMARK 500 SER B 219 150.01 168.21 REMARK 500 GLU B 220 29.24 -70.80 REMARK 500 GLU B 245 75.23 -154.26 REMARK 500 GLN B 250 -49.98 -19.41 REMARK 500 GLU B 256 -0.06 -56.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 221 ASP A 222 143.86 REMARK 500 ASN A 264 ARG A 265 147.88 REMARK 500 MET B 2 ASN B 3 -149.87 REMARK 500 GLN B 78 LEU B 79 -148.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 139 OE2 REMARK 620 2 ASP A 170 OD1 74.0 REMARK 620 3 HIS A 197 ND1 108.3 116.6 REMARK 620 4 GLU A 245 OE2 163.5 89.4 79.8 REMARK 620 5 HOH A 403 O 83.1 89.7 153.2 96.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 139 OE2 REMARK 620 2 ASP B 170 OD2 74.8 REMARK 620 3 HIS B 197 ND1 115.2 121.9 REMARK 620 4 GLU B 245 OE1 163.0 91.2 80.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q02 RELATED DB: PDB REMARK 900 ANOTHER SPACE GROUP. UNKNOWN LIGAND IN THE ACTIVE CENTER DBREF 4HGX A 2 272 UNP Q8ZK48 Q8ZK48_SALTY 1 271 DBREF 4HGX B 2 272 UNP Q8ZK48 Q8ZK48_SALTY 1 271 SEQRES 1 A 271 MET ASN ILE GLU LYS THR ARG PHE CYS ILE ASN ARG LYS SEQRES 2 A 271 ILE ALA PRO GLY LEU SER ILE GLU ALA PHE PHE ARG LEU SEQRES 3 A 271 VAL LYS ARG LEU GLU PHE ASN LYS VAL GLU LEU ARG ASN SEQRES 4 A 271 ASP MET PRO SER GLY SER VAL THR ASP ASP LEU ASN TYR SEQRES 5 A 271 ASN GLN VAL ARG ASN LEU ALA GLU LYS TYR GLY LEU GLU SEQRES 6 A 271 ILE VAL THR ILE ASN ALA VAL TYR PRO PHE ASN GLN LEU SEQRES 7 A 271 THR GLU GLU VAL VAL LYS LYS THR GLU GLY LEU LEU ARG SEQRES 8 A 271 ASP ALA GLN GLY VAL GLY ALA ARG ALA LEU VAL LEU CYS SEQRES 9 A 271 PRO LEU ASN ASP GLY THR ILE VAL PRO PRO GLU VAL THR SEQRES 10 A 271 VAL GLU ALA ILE LYS ARG LEU SER ASP LEU PHE ALA ARG SEQRES 11 A 271 TYR ASP ILE GLN GLY LEU VAL GLU PRO LEU GLY PHE ARG SEQRES 12 A 271 VAL SER SER LEU ARG SER ALA VAL TRP ALA GLN GLN LEU SEQRES 13 A 271 ILE ARG GLU ALA GLY SER PRO PHE LYS VAL LEU LEU ASP SEQRES 14 A 271 THR PHE HIS HIS HIS LEU TYR GLU GLU ALA GLU LYS GLU SEQRES 15 A 271 PHE ALA SER ARG ILE ASP ILE SER ALA ILE GLY LEU VAL SEQRES 16 A 271 HIS LEU SER GLY VAL GLU ASP THR ARG PRO THR GLU ALA SEQRES 17 A 271 LEU ALA ASP GLU GLN ARG ILE MET LEU SER GLU LYS ASP SEQRES 18 A 271 VAL MET GLN ASN TYR GLN GLN VAL GLN ARG LEU GLU ASN SEQRES 19 A 271 MET GLY TYR ARG GLY ILE TYR ALA PHE GLU PRO PHE SER SEQRES 20 A 271 SER GLN LEU ALA SER TRP SER GLU ALA GLU ILE GLU GLU SEQRES 21 A 271 GLN ILE ASN ARG SER VAL SER LEU LEU LEU GLN SEQRES 1 B 271 MET ASN ILE GLU LYS THR ARG PHE CYS ILE ASN ARG LYS SEQRES 2 B 271 ILE ALA PRO GLY LEU SER ILE GLU ALA PHE PHE ARG LEU SEQRES 3 B 271 VAL LYS ARG LEU GLU PHE ASN LYS VAL GLU LEU ARG ASN SEQRES 4 B 271 ASP MET PRO SER GLY SER VAL THR ASP ASP LEU ASN TYR SEQRES 5 B 271 ASN GLN VAL ARG ASN LEU ALA GLU LYS TYR GLY LEU GLU SEQRES 6 B 271 ILE VAL THR ILE ASN ALA VAL TYR PRO PHE ASN GLN LEU SEQRES 7 B 271 THR GLU GLU VAL VAL LYS LYS THR GLU GLY LEU LEU ARG SEQRES 8 B 271 ASP ALA GLN GLY VAL GLY ALA ARG ALA LEU VAL LEU CYS SEQRES 9 B 271 PRO LEU ASN ASP GLY THR ILE VAL PRO PRO GLU VAL THR SEQRES 10 B 271 VAL GLU ALA ILE LYS ARG LEU SER ASP LEU PHE ALA ARG SEQRES 11 B 271 TYR ASP ILE GLN GLY LEU VAL GLU PRO LEU GLY PHE ARG SEQRES 12 B 271 VAL SER SER LEU ARG SER ALA VAL TRP ALA GLN GLN LEU SEQRES 13 B 271 ILE ARG GLU ALA GLY SER PRO PHE LYS VAL LEU LEU ASP SEQRES 14 B 271 THR PHE HIS HIS HIS LEU TYR GLU GLU ALA GLU LYS GLU SEQRES 15 B 271 PHE ALA SER ARG ILE ASP ILE SER ALA ILE GLY LEU VAL SEQRES 16 B 271 HIS LEU SER GLY VAL GLU ASP THR ARG PRO THR GLU ALA SEQRES 17 B 271 LEU ALA ASP GLU GLN ARG ILE MET LEU SER GLU LYS ASP SEQRES 18 B 271 VAL MET GLN ASN TYR GLN GLN VAL GLN ARG LEU GLU ASN SEQRES 19 B 271 MET GLY TYR ARG GLY ILE TYR ALA PHE GLU PRO PHE SER SEQRES 20 B 271 SER GLN LEU ALA SER TRP SER GLU ALA GLU ILE GLU GLU SEQRES 21 B 271 GLN ILE ASN ARG SER VAL SER LEU LEU LEU GLN HET ZN A 301 1 HET ACT A 302 4 HET ZN B 301 1 HET ACT B 302 4 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 3 ZN 2(ZN 2+) FORMUL 4 ACT 2(C2 H3 O2 1-) FORMUL 7 HOH *105(H2 O) HELIX 1 1 LYS A 14 ALA A 16 5 3 HELIX 2 2 SER A 20 LEU A 31 1 12 HELIX 3 3 ASN A 52 TYR A 63 1 12 HELIX 4 4 THR A 80 GLY A 98 1 19 HELIX 5 5 PRO A 114 ARG A 131 1 18 HELIX 6 6 SER A 150 GLY A 162 1 13 HELIX 7 7 THR A 171 LEU A 176 1 6 HELIX 8 8 ASP A 189 SER A 191 5 3 HELIX 9 9 PRO A 206 LEU A 210 5 5 HELIX 10 10 ALA A 211 ARG A 215 5 5 HELIX 11 11 GLN A 225 GLY A 237 1 13 HELIX 12 12 SER A 248 SER A 253 5 6 HELIX 13 13 SER A 255 SER A 266 1 12 HELIX 14 14 GLU B 5 THR B 7 5 3 HELIX 15 15 LYS B 14 ALA B 16 5 3 HELIX 16 16 SER B 20 LEU B 31 1 12 HELIX 17 17 ASN B 52 TYR B 63 1 12 HELIX 18 18 THR B 80 GLY B 98 1 19 HELIX 19 19 PRO B 114 TYR B 132 1 19 HELIX 20 20 SER B 150 ALA B 161 1 12 HELIX 21 21 THR B 171 TYR B 177 1 7 HELIX 22 22 GLU B 183 ILE B 188 1 6 HELIX 23 23 ASP B 189 SER B 191 5 3 HELIX 24 24 PRO B 206 LEU B 210 5 5 HELIX 25 25 ALA B 211 ARG B 215 5 5 HELIX 26 26 GLN B 225 MET B 236 1 12 HELIX 27 27 SER B 248 TRP B 254 5 7 HELIX 28 28 SER B 255 GLN B 272 1 18 SHEET 1 A 9 PHE A 9 ASN A 12 0 SHEET 2 A 9 LYS A 35 ARG A 39 1 O LYS A 35 N ILE A 11 SHEET 3 A 9 GLU A 66 VAL A 73 1 O GLU A 66 N VAL A 36 SHEET 4 A 9 ALA A 101 LEU A 104 1 O VAL A 103 N VAL A 73 SHEET 5 A 9 GLN A 135 VAL A 138 1 O LEU A 137 N LEU A 104 SHEET 6 A 9 LYS A 166 ASP A 170 1 O LEU A 168 N VAL A 138 SHEET 7 A 9 ILE A 193 LEU A 198 1 O HIS A 197 N LEU A 169 SHEET 8 A 9 TYR A 242 PHE A 244 1 O ALA A 243 N LEU A 198 SHEET 9 A 9 PHE A 9 ASN A 12 1 N CYS A 10 O TYR A 242 SHEET 1 B 9 PHE B 9 ASN B 12 0 SHEET 2 B 9 LYS B 35 ARG B 39 1 O LYS B 35 N ILE B 11 SHEET 3 B 9 GLU B 66 VAL B 73 1 O VAL B 68 N VAL B 36 SHEET 4 B 9 ALA B 101 LEU B 104 1 O VAL B 103 N VAL B 73 SHEET 5 B 9 GLN B 135 VAL B 138 1 O LEU B 137 N LEU B 104 SHEET 6 B 9 LYS B 166 ASP B 170 1 O LEU B 168 N VAL B 138 SHEET 7 B 9 ILE B 193 LEU B 198 1 O HIS B 197 N LEU B 169 SHEET 8 B 9 TYR B 242 PHE B 244 1 O ALA B 243 N LEU B 198 SHEET 9 B 9 PHE B 9 ASN B 12 1 N ASN B 12 O PHE B 244 LINK OE2 GLU A 139 ZN ZN A 301 1555 1555 2.04 LINK OD1 ASP A 170 ZN ZN A 301 1555 1555 1.99 LINK ND1 HIS A 197 ZN ZN A 301 1555 1555 2.19 LINK OE2 GLU A 245 ZN ZN A 301 1555 1555 2.01 LINK ZN ZN A 301 O HOH A 403 1555 1555 2.31 LINK OE2 GLU B 139 ZN ZN B 301 1555 1555 1.99 LINK OD2 ASP B 170 ZN ZN B 301 1555 1555 2.00 LINK ND1 HIS B 197 ZN ZN B 301 1555 1555 2.13 LINK OE1 GLU B 245 ZN ZN B 301 1555 1555 2.18 CISPEP 1 ASN A 71 ALA A 72 0 -6.94 CISPEP 2 TYR A 74 PRO A 75 0 -9.88 CISPEP 3 ASN B 71 ALA B 72 0 -15.78 CISPEP 4 TYR B 74 PRO B 75 0 0.17 SITE 1 AC1 5 GLU A 139 ASP A 170 HIS A 197 GLU A 245 SITE 2 AC1 5 HOH A 403 SITE 1 AC2 4 ARG A 149 SER A 150 TRP A 153 HOH A 433 SITE 1 AC3 4 GLU B 139 ASP B 170 HIS B 197 GLU B 245 SITE 1 AC4 1 TRP B 153 CRYST1 93.180 93.180 125.210 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010732 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007987 0.00000