HEADER FLAVOPROTEIN,SIGNALING PROTEIN 09-OCT-12 4HH1 TITLE DARK-STATE STRUCTURE OF APPA WILD-TYPE WITHOUT THE CYS-RICH REGION TITLE 2 FROM RB. SPHAEROIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: APPA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3-399; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOBACTER SPHAEROIDES; SOURCE 3 ORGANISM_COMMON: RHODOPSEUDOMONAS SPHAEROIDES; SOURCE 4 ORGANISM_TAXID: 1063; SOURCE 5 STRAIN: 2.4.1; SOURCE 6 GENE: APPA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BLUF DOMAIN, SCHIC DOMAIN, PHOTORECEPTOR, PPSR, FLAVOPROTEIN, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.WINKLER,U.HEINTZ,R.LINDNER,J.REINSTEIN,R.SHOEMAN,I.SCHLICHTING REVDAT 5 28-FEB-24 4HH1 1 REMARK SEQADV REVDAT 4 15-NOV-17 4HH1 1 REMARK REVDAT 3 17-JUL-13 4HH1 1 JRNL REVDAT 2 10-JUL-13 4HH1 1 JRNL REVDAT 1 05-JUN-13 4HH1 0 JRNL AUTH A.WINKLER,U.HEINTZ,R.LINDNER,J.REINSTEIN,R.L.SHOEMAN, JRNL AUTH 2 I.SCHLICHTING JRNL TITL A TERNARY APPA-PPSR-DNA COMPLEX MEDIATES LIGHT REGULATION OF JRNL TITL 2 PHOTOSYNTHESIS-RELATED GENE EXPRESSION. JRNL REF NAT.STRUCT.MOL.BIOL. V. 20 859 2013 JRNL REFN ISSN 1545-9993 JRNL PMID 23728293 JRNL DOI 10.1038/NSMB.2597 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14209 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 705 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.2117 - 5.9856 0.99 2802 129 0.1634 0.1899 REMARK 3 2 5.9856 - 4.7516 1.00 2678 178 0.1853 0.2307 REMARK 3 3 4.7516 - 4.1512 1.00 2656 134 0.1709 0.2095 REMARK 3 4 4.1512 - 3.7717 1.00 2716 139 0.2087 0.2701 REMARK 3 5 3.7717 - 3.5014 1.00 2652 125 0.2438 0.2759 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 84.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 80.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5960 REMARK 3 ANGLE : 1.036 8104 REMARK 3 CHIRALITY : 0.064 961 REMARK 3 PLANARITY : 0.007 1045 REMARK 3 DIHEDRAL : 12.780 2188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 117) REMARK 3 ORIGIN FOR THE GROUP (A): 54.3989 22.8871 212.6781 REMARK 3 T TENSOR REMARK 3 T11: 0.7383 T22: 0.5810 REMARK 3 T33: 0.4141 T12: 0.1902 REMARK 3 T13: -0.0004 T23: -0.0487 REMARK 3 L TENSOR REMARK 3 L11: 0.0212 L22: 0.0775 REMARK 3 L33: 0.0561 L12: -0.0180 REMARK 3 L13: 0.0160 L23: -0.0310 REMARK 3 S TENSOR REMARK 3 S11: -0.1212 S12: -0.1098 S13: 0.0431 REMARK 3 S21: 0.1293 S22: -0.0389 S23: -0.1115 REMARK 3 S31: 0.1290 S32: 0.2252 S33: -0.0125 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 263) REMARK 3 ORIGIN FOR THE GROUP (A): 42.6176 42.7791 204.8053 REMARK 3 T TENSOR REMARK 3 T11: 0.6285 T22: 0.3942 REMARK 3 T33: 0.4092 T12: 0.0841 REMARK 3 T13: 0.0637 T23: -0.0578 REMARK 3 L TENSOR REMARK 3 L11: 0.0339 L22: 0.0630 REMARK 3 L33: 0.0933 L12: 0.0332 REMARK 3 L13: -0.0470 L23: -0.0115 REMARK 3 S TENSOR REMARK 3 S11: 0.2309 S12: 0.1547 S13: 0.0492 REMARK 3 S21: -0.0198 S22: -0.0618 S23: -0.0476 REMARK 3 S31: -0.1592 S32: 0.1923 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.7941 56.7319 219.6573 REMARK 3 T TENSOR REMARK 3 T11: 0.6562 T22: 0.5540 REMARK 3 T33: 0.5277 T12: -0.2785 REMARK 3 T13: 0.1559 T23: -0.1416 REMARK 3 L TENSOR REMARK 3 L11: 0.0404 L22: 0.0321 REMARK 3 L33: 0.1389 L12: 0.0174 REMARK 3 L13: 0.0642 L23: 0.0133 REMARK 3 S TENSOR REMARK 3 S11: 0.1567 S12: 0.0094 S13: 0.1957 REMARK 3 S21: 0.0572 S22: 0.0479 S23: -0.0087 REMARK 3 S31: -0.0730 S32: 0.2359 S33: 0.0253 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4854 23.8000 236.2402 REMARK 3 T TENSOR REMARK 3 T11: 0.6885 T22: 0.2742 REMARK 3 T33: 0.4872 T12: -0.2635 REMARK 3 T13: -0.0466 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 0.0463 L22: 0.1408 REMARK 3 L33: 0.0247 L12: -0.0062 REMARK 3 L13: -0.0218 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: -0.0609 S12: 0.0574 S13: -0.0893 REMARK 3 S21: -0.0755 S22: 0.0077 S23: 0.0956 REMARK 3 S31: 0.0292 S32: -0.0291 S33: -0.1854 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 118 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5054 44.7368 241.3884 REMARK 3 T TENSOR REMARK 3 T11: 0.7261 T22: 0.3639 REMARK 3 T33: 0.4680 T12: -0.3484 REMARK 3 T13: 0.0559 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.0338 L22: 0.0583 REMARK 3 L33: 0.0692 L12: 0.0386 REMARK 3 L13: -0.0108 L23: 0.0039 REMARK 3 S TENSOR REMARK 3 S11: 0.0897 S12: -0.0663 S13: 0.0480 REMARK 3 S21: -0.0315 S22: 0.0048 S23: -0.0439 REMARK 3 S31: -0.0660 S32: 0.0185 S33: 0.1292 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 264 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5571 55.5416 224.7924 REMARK 3 T TENSOR REMARK 3 T11: 0.5832 T22: 0.2587 REMARK 3 T33: 0.3537 T12: -0.0752 REMARK 3 T13: 0.1456 T23: 0.0630 REMARK 3 L TENSOR REMARK 3 L11: 0.1877 L22: 0.1728 REMARK 3 L33: 0.3248 L12: 0.0908 REMARK 3 L13: -0.0584 L23: 0.1687 REMARK 3 S TENSOR REMARK 3 S11: 0.1844 S12: 0.0019 S13: 0.0051 REMARK 3 S21: 0.0407 S22: 0.0521 S23: -0.0692 REMARK 3 S31: -0.1165 S32: -0.2943 S33: 0.0548 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HH1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075456. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : DYNAMICALLY BENDABLE MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14223 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 58.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.450 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.3M TRIS CHLORIDE BUFFER, 1.3M SODIUM REMARK 280 CHLORIDE, 0.3M MAGNESIUM CHLORIDE, PH 7.4, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 255.87333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 127.93667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 127.93667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 255.87333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 ASP A 4 REMARK 465 LEU A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 ASP A 8 REMARK 465 VAL A 9 REMARK 465 THR A 10 REMARK 465 MET A 11 REMARK 465 THR A 12 REMARK 465 GLY A 13 REMARK 465 ALA A 121 REMARK 465 GLU A 122 REMARK 465 SER A 399 REMARK 465 SER A 400 REMARK 465 ALA A 401 REMARK 465 HIS A 402 REMARK 465 HIS A 403 REMARK 465 HIS A 404 REMARK 465 HIS A 405 REMARK 465 HIS A 406 REMARK 465 HIS A 407 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 ASP B 4 REMARK 465 LEU B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 ASP B 8 REMARK 465 VAL B 9 REMARK 465 THR B 10 REMARK 465 MET B 11 REMARK 465 THR B 12 REMARK 465 GLY B 13 REMARK 465 SER B 14 REMARK 465 ALA B 121 REMARK 465 GLU B 122 REMARK 465 SER B 399 REMARK 465 SER B 400 REMARK 465 ALA B 401 REMARK 465 HIS B 402 REMARK 465 HIS B 403 REMARK 465 HIS B 404 REMARK 465 HIS B 405 REMARK 465 HIS B 406 REMARK 465 HIS B 407 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 106 101.69 -162.54 REMARK 500 THR A 201 -80.88 -95.44 REMARK 500 HIS A 265 66.04 -160.79 REMARK 500 ARG A 323 19.15 57.72 REMARK 500 GLU A 338 38.38 -147.01 REMARK 500 PRO A 372 -14.00 -49.63 REMARK 500 ASP B 165 45.68 -104.76 REMARK 500 THR B 201 -76.95 -122.58 REMARK 500 HIS B 265 65.67 -159.21 REMARK 500 LEU B 334 -30.06 -140.40 REMARK 500 GLU B 338 40.40 -82.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HH0 RELATED DB: PDB REMARK 900 STRUCTURE OF APPA C20S WITHOUT THE CYS-RICH REGION REMARK 900 RELATED ID: 4HH3 RELATED DB: PDB REMARK 900 STRUCTURE OF THE APPA PPSR2 CORE COMPLEX REMARK 900 RELATED ID: 4HH2 RELATED DB: PDB REMARK 900 STRUCTURE OF PPSR WITHOUT THE HTH MOTIF REMARK 900 RELATED ID: 2IYG RELATED DB: PDB REMARK 900 DARK STATE STRUCTURE OF THE APPA BLUF DOMAIN REMARK 900 RELATED ID: 2IYI RELATED DB: PDB REMARK 900 LIGHT-INDUCED INTERMEDIATE STRUCTURE OF THE APPA BLUF DOMAIN REMARK 900 RELATED ID: 1YRX RELATED DB: PDB REMARK 900 THE BLUF DOMAIN OF APPA FROM RHODOBACTER SPHAEROIDES DBREF 4HH1 A 3 399 UNP Q53119 Q53119_RHOSH 3 399 DBREF 4HH1 B 3 399 UNP Q53119 Q53119_RHOSH 3 399 SEQADV 4HH1 ALA A 2 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 SER A 399 UNP Q53119 CYS 399 ENGINEERED MUTATION SEQADV 4HH1 SER A 400 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 ALA A 401 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 402 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 403 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 404 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 405 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 406 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS A 407 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 ALA B 2 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 SER B 399 UNP Q53119 CYS 399 ENGINEERED MUTATION SEQADV 4HH1 SER B 400 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 ALA B 401 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 402 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 403 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 404 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 405 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 406 UNP Q53119 EXPRESSION TAG SEQADV 4HH1 HIS B 407 UNP Q53119 EXPRESSION TAG SEQRES 1 A 406 ALA HIS ASP LEU GLU ALA ASP VAL THR MET THR GLY SER SEQRES 2 A 406 ASP LEU VAL SER CYS CYS TYR ARG SER LEU ALA ALA PRO SEQRES 3 A 406 ASP LEU THR LEU ARG ASP LEU LEU ASP ILE VAL GLU THR SEQRES 4 A 406 SER GLN ALA HIS ASN ALA ARG ALA GLN LEU THR GLY ALA SEQRES 5 A 406 LEU PHE TYR SER GLN GLY VAL PHE PHE GLN TRP LEU GLU SEQRES 6 A 406 GLY ARG PRO ALA ALA VAL ALA GLU VAL MET THR HIS ILE SEQRES 7 A 406 GLN ARG ASP ARG ARG HIS SER ASN VAL GLU ILE LEU ALA SEQRES 8 A 406 GLU GLU PRO ILE ALA LYS ARG ARG PHE ALA GLY TRP HIS SEQRES 9 A 406 MET GLN LEU SER CYS SER GLU ALA ASP MET ARG SER LEU SEQRES 10 A 406 GLY LEU ALA GLU SER ARG GLN ILE VAL THR VAL GLY ARG SEQRES 11 A 406 SER LEU VAL ALA ASP ASN THR ASN ILE PHE SER PHE ASP SEQRES 12 A 406 ARG ILE ALA ALA VAL ARG ARG PHE LEU SER ASP VAL CYS SEQRES 13 A 406 ALA ALA ARG THR LEU ALA PRO ASP THR PRO VAL GLU ALA SEQRES 14 A 406 ASP THR PHE ALA LEU TYR ALA LEU THR GLU ALA GLN ALA SEQRES 15 A 406 GLY ARG SER GLY ARG ALA LYS ALA VAL ALA ARG LEU SER SEQRES 16 A 406 ASP LEU LEU SER THR ASP PRO LEU GLY ARG LEU THR GLU SEQRES 17 A 406 VAL GLU GLU LEU LEU ARG ALA HIS ALA PRO THR ALA ALA SEQRES 18 A 406 ASP PHE ALA ARG LEU PHE GLU ALA CYS ALA GLU ARG LEU SEQRES 19 A 406 THR ARG ALA LEU ALA GLU ASP ARG ILE SER ARG MET GLN SEQRES 20 A 406 VAL THR LEU ALA TYR SER ALA LEU GLN MET ALA LEU ARG SEQRES 21 A 406 ARG ILE HIS HIS LEU PRO ASP PRO GLN LYS SER VAL GLY SEQRES 22 A 406 ALA VAL LEU VAL ALA GLY VAL PRO GLY HIS LYS PRO ILE SEQRES 23 A 406 LEU GLU ALA ALA LEU ALA ALA GLU MET LEU ARG ALA VAL SEQRES 24 A 406 GLY TRP SER THR SER VAL VAL HIS PRO GLU SER VAL ALA SEQRES 25 A 406 ALA LEU ALA ALA ARG LEU LYS THR SER ARG THR SER THR SEQRES 26 A 406 LEU VAL VAL ALA PRO SER LEU LEU GLU GLY THR GLU GLN SEQRES 27 A 406 GLU ALA ASP THR LEU ARG PHE VAL SER ALA LEU ARG ALA SEQRES 28 A 406 ARG THR ASP LEU PRO GLY LEU SER ILE LEU VAL GLY GLY SEQRES 29 A 406 ARG LEU ALA GLN LEU PRO PRO SER LYS LEU LYS ASP SER SEQRES 30 A 406 GLY ALA ASP ALA GLY PHE ALA HIS LEU ALA LEU LEU PRO SEQRES 31 A 406 ALA ALA LEU ALA ARG VAL ALA SER SER ALA HIS HIS HIS SEQRES 32 A 406 HIS HIS HIS SEQRES 1 B 406 ALA HIS ASP LEU GLU ALA ASP VAL THR MET THR GLY SER SEQRES 2 B 406 ASP LEU VAL SER CYS CYS TYR ARG SER LEU ALA ALA PRO SEQRES 3 B 406 ASP LEU THR LEU ARG ASP LEU LEU ASP ILE VAL GLU THR SEQRES 4 B 406 SER GLN ALA HIS ASN ALA ARG ALA GLN LEU THR GLY ALA SEQRES 5 B 406 LEU PHE TYR SER GLN GLY VAL PHE PHE GLN TRP LEU GLU SEQRES 6 B 406 GLY ARG PRO ALA ALA VAL ALA GLU VAL MET THR HIS ILE SEQRES 7 B 406 GLN ARG ASP ARG ARG HIS SER ASN VAL GLU ILE LEU ALA SEQRES 8 B 406 GLU GLU PRO ILE ALA LYS ARG ARG PHE ALA GLY TRP HIS SEQRES 9 B 406 MET GLN LEU SER CYS SER GLU ALA ASP MET ARG SER LEU SEQRES 10 B 406 GLY LEU ALA GLU SER ARG GLN ILE VAL THR VAL GLY ARG SEQRES 11 B 406 SER LEU VAL ALA ASP ASN THR ASN ILE PHE SER PHE ASP SEQRES 12 B 406 ARG ILE ALA ALA VAL ARG ARG PHE LEU SER ASP VAL CYS SEQRES 13 B 406 ALA ALA ARG THR LEU ALA PRO ASP THR PRO VAL GLU ALA SEQRES 14 B 406 ASP THR PHE ALA LEU TYR ALA LEU THR GLU ALA GLN ALA SEQRES 15 B 406 GLY ARG SER GLY ARG ALA LYS ALA VAL ALA ARG LEU SER SEQRES 16 B 406 ASP LEU LEU SER THR ASP PRO LEU GLY ARG LEU THR GLU SEQRES 17 B 406 VAL GLU GLU LEU LEU ARG ALA HIS ALA PRO THR ALA ALA SEQRES 18 B 406 ASP PHE ALA ARG LEU PHE GLU ALA CYS ALA GLU ARG LEU SEQRES 19 B 406 THR ARG ALA LEU ALA GLU ASP ARG ILE SER ARG MET GLN SEQRES 20 B 406 VAL THR LEU ALA TYR SER ALA LEU GLN MET ALA LEU ARG SEQRES 21 B 406 ARG ILE HIS HIS LEU PRO ASP PRO GLN LYS SER VAL GLY SEQRES 22 B 406 ALA VAL LEU VAL ALA GLY VAL PRO GLY HIS LYS PRO ILE SEQRES 23 B 406 LEU GLU ALA ALA LEU ALA ALA GLU MET LEU ARG ALA VAL SEQRES 24 B 406 GLY TRP SER THR SER VAL VAL HIS PRO GLU SER VAL ALA SEQRES 25 B 406 ALA LEU ALA ALA ARG LEU LYS THR SER ARG THR SER THR SEQRES 26 B 406 LEU VAL VAL ALA PRO SER LEU LEU GLU GLY THR GLU GLN SEQRES 27 B 406 GLU ALA ASP THR LEU ARG PHE VAL SER ALA LEU ARG ALA SEQRES 28 B 406 ARG THR ASP LEU PRO GLY LEU SER ILE LEU VAL GLY GLY SEQRES 29 B 406 ARG LEU ALA GLN LEU PRO PRO SER LYS LEU LYS ASP SER SEQRES 30 B 406 GLY ALA ASP ALA GLY PHE ALA HIS LEU ALA LEU LEU PRO SEQRES 31 B 406 ALA ALA LEU ALA ARG VAL ALA SER SER ALA HIS HIS HIS SEQRES 32 B 406 HIS HIS HIS HET FMN A 500 31 HET FMN B 500 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) HELIX 1 1 THR A 30 GLN A 49 1 20 HELIX 2 2 ARG A 68 ARG A 81 1 14 HELIX 3 3 GLU A 112 GLY A 119 1 8 HELIX 4 4 PHE A 141 ALA A 163 1 23 HELIX 5 5 GLU A 169 ASP A 171 5 3 HELIX 6 6 THR A 172 ASP A 202 1 31 HELIX 7 7 ARG A 206 ALA A 218 1 13 HELIX 8 8 THR A 220 GLU A 241 1 22 HELIX 9 9 SER A 245 HIS A 264 1 20 HELIX 10 10 PRO A 286 VAL A 300 1 15 HELIX 11 11 SER A 311 ARG A 323 1 13 HELIX 12 12 GLU A 338 THR A 354 1 17 HELIX 13 13 GLY A 365 LEU A 370 5 6 HELIX 14 14 PRO A 371 GLY A 379 1 9 HELIX 15 15 HIS A 386 ALA A 388 5 3 HELIX 16 16 LEU A 389 ALA A 398 1 10 HELIX 17 17 THR B 30 GLN B 49 1 20 HELIX 18 18 ARG B 68 ARG B 81 1 14 HELIX 19 19 GLU B 112 SER B 117 1 6 HELIX 20 20 PHE B 141 ALA B 163 1 23 HELIX 21 21 ASP B 171 ASP B 202 1 32 HELIX 22 22 ARG B 206 ALA B 218 1 13 HELIX 23 23 THR B 220 GLU B 241 1 22 HELIX 24 24 SER B 245 HIS B 264 1 20 HELIX 25 25 PRO B 286 VAL B 300 1 15 HELIX 26 26 SER B 311 ARG B 323 1 13 HELIX 27 27 GLU B 338 THR B 354 1 17 HELIX 28 28 GLY B 365 LEU B 370 5 6 HELIX 29 29 PRO B 371 SER B 378 1 8 HELIX 30 30 HIS B 386 ALA B 388 5 3 HELIX 31 31 LEU B 389 ALA B 398 1 10 SHEET 1 A 6 HIS A 85 ILE A 96 0 SHEET 2 A 6 LEU A 16 ALA A 25 -1 N CYS A 20 O LEU A 91 SHEET 3 A 6 VAL A 60 GLY A 67 -1 O LEU A 65 N CYS A 19 SHEET 4 A 6 THR A 51 SER A 57 -1 N PHE A 55 O PHE A 62 SHEET 5 A 6 GLN A 107 SER A 111 1 O SER A 109 N TYR A 56 SHEET 6 A 6 VAL A 127 VAL A 129 1 O VAL A 129 N CYS A 110 SHEET 1 B 5 TRP A 302 VAL A 307 0 SHEET 2 B 5 GLY A 274 ALA A 279 1 N VAL A 278 O SER A 305 SHEET 3 B 5 THR A 326 VAL A 329 1 O VAL A 328 N LEU A 277 SHEET 4 B 5 SER A 360 VAL A 363 1 O SER A 360 N LEU A 327 SHEET 5 B 5 ALA A 382 GLY A 383 1 O ALA A 382 N VAL A 363 SHEET 1 C 6 HIS B 85 PRO B 95 0 SHEET 2 C 6 VAL B 17 ALA B 25 -1 N SER B 18 O GLU B 94 SHEET 3 C 6 VAL B 60 GLY B 67 -1 O PHE B 61 N SER B 23 SHEET 4 C 6 THR B 51 SER B 57 -1 N PHE B 55 O PHE B 62 SHEET 5 C 6 GLN B 107 SER B 111 1 O SER B 109 N TYR B 56 SHEET 6 C 6 VAL B 127 VAL B 129 1 O VAL B 129 N CYS B 110 SHEET 1 D 5 SER B 303 VAL B 307 0 SHEET 2 D 5 ALA B 275 ALA B 279 1 N VAL B 278 O SER B 305 SHEET 3 D 5 THR B 326 VAL B 329 1 O VAL B 328 N LEU B 277 SHEET 4 D 5 SER B 360 VAL B 363 1 O LEU B 362 N VAL B 329 SHEET 5 D 5 ALA B 382 GLY B 383 1 O ALA B 382 N VAL B 363 CISPEP 1 ARG A 124 GLN A 125 0 4.56 CISPEP 2 ARG B 124 GLN B 125 0 2.86 CISPEP 3 PRO B 357 GLY B 358 0 2.91 SITE 1 AC1 14 TYR A 21 ILE A 37 SER A 41 HIS A 44 SITE 2 AC1 14 ASN A 45 PHE A 61 GLN A 63 LEU A 65 SITE 3 AC1 14 VAL A 75 HIS A 78 ILE A 79 ASP A 82 SITE 4 AC1 14 ARG A 84 MET A 106 SITE 1 AC2 13 TYR B 21 ILE B 37 SER B 41 HIS B 44 SITE 2 AC2 13 ASN B 45 PHE B 61 GLN B 63 VAL B 75 SITE 3 AC2 13 HIS B 78 ILE B 79 ASP B 82 ARG B 84 SITE 4 AC2 13 HIS B 85 CRYST1 70.530 70.530 383.810 90.00 90.00 120.00 P 32 1 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014178 0.008186 0.000000 0.00000 SCALE2 0.000000 0.016372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002605 0.00000