HEADER IMMUNE SYSTEM 11-OCT-12 4HIJ TITLE ANTI-STREPTOCOCCUS PNEUMONIAE 23F FAB 023.102 WITH BOUND L-RHAMNOSE- TITLE 2 (1-2)-ALPHA-D-GALACTOSE-(3-O)-PHOSPHATE-2-GLYCEROL COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAB 023.102 LIGHT CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FAB 023.102 HEAVY CHAIN; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PARC; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: XL1-BLUE; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PARC KEYWDS IMMUNOGLOBIN, ANTIBODY, STREPTOCOCCUS PNEUMONIAE 23F, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.BRYSON,L.RISNES,S.DAMGUPTA,C.A.THOMSON,J.W.SCHRADER,E.F.PAI REVDAT 4 20-SEP-23 4HIJ 1 HETSYN REVDAT 3 29-JUL-20 4HIJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 13-DEC-17 4HIJ 1 JRNL REVDAT 1 28-AUG-13 4HIJ 0 JRNL AUTH S.BRYSON,C.A.THOMSON,L.F.RISNES,S.DASGUPTA,K.SMITH, JRNL AUTH 2 J.W.SCHRADER,E.F.PAI JRNL TITL STRUCTURES OF PREFERRED HUMAN IGV GENES-BASED PROTECTIVE JRNL TITL 2 ANTIBODIES IDENTIFY HOW CONSERVED RESIDUES CONTACT DIVERSE JRNL TITL 3 ANTIGENS AND ASSIGN SOURCE OF SPECIFICITY TO CDR3 LOOP JRNL TITL 4 VARIATION. JRNL REF J. IMMUNOL. V. 196 4723 2016 JRNL REFN ESSN 1550-6606 JRNL PMID 27183571 JRNL DOI 10.4049/JIMMUNOL.1402890 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 53389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2672 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 319 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.720 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HIJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075509. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : RIGAKU OSMIC VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55118 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 1.680 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 67.4 REMARK 200 DATA REDUNDANCY IN SHELL : 1.17 REMARK 200 R MERGE FOR SHELL (I) : 0.25800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4HIE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05M NA CITRATE, PH 3-4, 18% PEG REMARK 280 3350, 0.2M LI ACETATE , VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K, PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.93500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.24400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.93500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.24400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: FAB FRAGMENT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 GLN A 3 REMARK 465 LEU A 4 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 CYS A 214 REMARK 465 ALA A 215 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 LEU B 1 REMARK 465 PRO B 126 REMARK 465 CYS B 127 REMARK 465 SER B 128 REMARK 465 ARG B 129 REMARK 465 SER B 130 REMARK 465 THR B 131 REMARK 465 SER B 132 REMARK 465 GLU B 133 REMARK 465 SER B 186 REMARK 465 SER B 187 REMARK 465 ASN B 188 REMARK 465 PHE B 189 REMARK 465 GLY B 190 REMARK 465 THR B 191 REMARK 465 GLU B 212 REMARK 465 ARG B 213 REMARK 465 LYS B 214 REMARK 465 CYS B 215 REMARK 465 TRP B 216 REMARK 465 ALA B 217 REMARK 465 ARG B 218 REMARK 465 HIS B 219 REMARK 465 HIS B 220 REMARK 465 HIS B 221 REMARK 465 HIS B 222 REMARK 465 HIS B 223 REMARK 465 HIS B 224 REMARK 465 ALA C 1 REMARK 465 GLY C 212 REMARK 465 GLU C 213 REMARK 465 CYS C 214 REMARK 465 ALA C 215 REMARK 465 ALA C 216 REMARK 465 ALA C 217 REMARK 465 LEU D 1 REMARK 465 PRO D 126 REMARK 465 CYS D 127 REMARK 465 SER D 128 REMARK 465 ARG D 129 REMARK 465 SER D 130 REMARK 465 THR D 131 REMARK 465 SER D 132 REMARK 465 GLU D 133 REMARK 465 SER D 134 REMARK 465 SER D 186 REMARK 465 SER D 187 REMARK 465 ASN D 188 REMARK 465 PHE D 189 REMARK 465 GLY D 190 REMARK 465 THR D 191 REMARK 465 GLU D 212 REMARK 465 ARG D 213 REMARK 465 LYS D 214 REMARK 465 CYS D 215 REMARK 465 TRP D 216 REMARK 465 ALA D 217 REMARK 465 ARG D 218 REMARK 465 HIS D 219 REMARK 465 HIS D 220 REMARK 465 HIS D 221 REMARK 465 HIS D 222 REMARK 465 HIS D 223 REMARK 465 HIS D 224 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 95A C - N - CA ANGL. DEV. = 13.3 DEGREES REMARK 500 CYS A 194 CA - CB - SG ANGL. DEV. = 10.5 DEGREES REMARK 500 PHE B 27 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 29 105.90 -53.19 REMARK 500 ALA A 51 -22.76 70.51 REMARK 500 ASP A 92 -144.27 -118.30 REMARK 500 ASN A 138 71.85 36.13 REMARK 500 ASN A 152 -3.72 78.79 REMARK 500 PRO B 41 102.43 -59.57 REMARK 500 ASN B 76 58.17 37.69 REMARK 500 ASN C 31 -37.05 -39.85 REMARK 500 ALA C 51 -22.60 69.17 REMARK 500 ALA C 84 -157.99 -158.19 REMARK 500 ASN C 138 78.02 39.47 REMARK 500 VAL D 48 -51.71 -122.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HH9 RELATED DB: PDB REMARK 900 ANTI-HUMAN CYTOMEGALOVIRUS (HCMV) FAB KE5 REMARK 900 RELATED ID: 4HHA RELATED DB: PDB REMARK 900 ANTI-HUMAN CYTOMEGALOVIRUS (HCMV) FAB KE5 WITH EPITOPE PEPTIDE AD- REMARK 900 2S1 REMARK 900 RELATED ID: 4HIE RELATED DB: PDB REMARK 900 ANTI-STREPTOCOCCUS PNEUMONIAE 23F FAB 023.102 REMARK 900 RELATED ID: 4HIH RELATED DB: PDB REMARK 900 ANTI-STREPTOCOCCUS PNEUMONIAE 23F FAB 023.102 WITH BOUND RHAMNOSE REMARK 900 RELATED ID: 4HII RELATED DB: PDB REMARK 900 ANTI-STREPTOCOCCUS PNEUMONIAE 23F FAB 023.102 WITH BOUND RHAMNOSE- REMARK 900 GALACTOSE DBREF 4HIJ A 1 217 PDB 4HIJ 4HIJ 1 217 DBREF 4HIJ C 1 217 PDB 4HIJ 4HIJ 1 217 DBREF 4HIJ B 1 224 PDB 4HIJ 4HIJ 1 224 DBREF 4HIJ D 1 224 PDB 4HIJ 4HIJ 1 224 SEQRES 1 A 219 ALA GLY GLN LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 A 219 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 A 219 GLN SER VAL THR ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 A 219 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 A 219 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 A 219 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 A 219 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 A 219 ASP ASN TRP PRO PRO ASP ALA THR PHE GLY GLN GLY THR SEQRES 9 A 219 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 A 219 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 A 219 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 A 219 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 A 219 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 A 219 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 A 219 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 A 219 CYS GLU VAL THR HIS GLN GLY LEU ARG SER PRO VAL THR SEQRES 17 A 219 LYS SER PHE ASN ARG GLY GLU CYS ALA ALA ALA SEQRES 1 B 231 LEU ILE ASN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 B 231 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 231 PHE THR PHE SER ARG TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 B 231 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL VAL SER SEQRES 5 B 231 SER ASP GLY ARG THR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 B 231 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 231 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 231 ALA VAL PHE TYR CYS ALA LYS GLU GLY GLY ASP ASN LYS SEQRES 9 B 231 PHE SER PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 B 231 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 B 231 LEU ALA PRO CYS SER ARG SER THR SER GLU SER THR ALA SEQRES 12 B 231 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 B 231 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 B 231 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 B 231 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER ASN SEQRES 16 B 231 PHE GLY THR GLN THR TYR THR CYS ASN VAL ASP HIS LYS SEQRES 17 B 231 PRO SER ASN THR LYS VAL ASP LYS THR VAL GLU ARG LYS SEQRES 18 B 231 CYS TRP ALA ARG HIS HIS HIS HIS HIS HIS SEQRES 1 C 219 ALA GLY GLN LEU THR GLN SER PRO ALA THR LEU SER LEU SEQRES 2 C 219 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 C 219 GLN SER VAL THR ASN TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 C 219 PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SER SEQRES 5 C 219 ASN ARG ALA THR GLY ILE PRO ALA ARG PHE SER GLY SER SEQRES 6 C 219 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 219 GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN ARG SEQRES 8 C 219 ASP ASN TRP PRO PRO ASP ALA THR PHE GLY GLN GLY THR SEQRES 9 C 219 LYS VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL SEQRES 10 C 219 PHE ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY SEQRES 11 C 219 THR ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO SEQRES 12 C 219 ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU SEQRES 13 C 219 GLN SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SEQRES 14 C 219 SER LYS ASP SER THR TYR SER LEU SER SER THR LEU THR SEQRES 15 C 219 LEU SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA SEQRES 16 C 219 CYS GLU VAL THR HIS GLN GLY LEU ARG SER PRO VAL THR SEQRES 17 C 219 LYS SER PHE ASN ARG GLY GLU CYS ALA ALA ALA SEQRES 1 D 231 LEU ILE ASN LEU VAL GLU SER GLY GLY GLY VAL VAL GLN SEQRES 2 D 231 PRO GLY ARG SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 231 PHE THR PHE SER ARG TYR GLY MET HIS TRP VAL ARG GLN SEQRES 4 D 231 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA VAL VAL SER SEQRES 5 D 231 SER ASP GLY ARG THR THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 D 231 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 D 231 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 D 231 ALA VAL PHE TYR CYS ALA LYS GLU GLY GLY ASP ASN LYS SEQRES 9 D 231 PHE SER PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 D 231 VAL SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO SEQRES 11 D 231 LEU ALA PRO CYS SER ARG SER THR SER GLU SER THR ALA SEQRES 12 D 231 ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO SEQRES 13 D 231 VAL THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY SEQRES 14 D 231 VAL HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU SEQRES 15 D 231 TYR SER LEU SER SER VAL VAL THR VAL PRO SER SER ASN SEQRES 16 D 231 PHE GLY THR GLN THR TYR THR CYS ASN VAL ASP HIS LYS SEQRES 17 D 231 PRO SER ASN THR LYS VAL ASP LYS THR VAL GLU ARG LYS SEQRES 18 D 231 CYS TRP ALA ARG HIS HIS HIS HIS HIS HIS HET MBG E 1 13 HET RAM E 2 10 HET MBG F 1 13 HET RAM F 2 10 HET PO4 B 303 4 HET GOL B 304 5 HET PO4 D 303 4 HET GOL D 304 5 HETNAM MBG METHYL BETA-D-GALACTOPYRANOSIDE HETNAM RAM ALPHA-L-RHAMNOPYRANOSE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN MBG METHYL-BETA-GALACTOSE; METHYL BETA-D-GALACTOSIDE; HETSYN 2 MBG METHYL D-GALACTOSIDE; METHYL GALACTOSIDE HETSYN RAM ALPHA-L-RHAMNOSE; 6-DEOXY-ALPHA-L-MANNOPYRANOSE; L- HETSYN 2 RAM RHAMNOSE; RHAMNOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 MBG 2(C7 H14 O6) FORMUL 5 RAM 2(C6 H12 O5) FORMUL 7 PO4 2(O4 P 3-) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 11 HOH *319(H2 O) HELIX 1 1 VAL A 29 ASN A 31 5 3 HELIX 2 2 GLU A 79 PHE A 83 5 5 HELIX 3 3 SER A 121 LYS A 126 1 6 HELIX 4 4 LYS A 183 GLU A 187 1 5 HELIX 5 7 THR B 28 TYR B 32 5 5 HELIX 6 8 ASP B 61 LYS B 64 5 4 HELIX 7 9 ARG B 83 THR B 87 5 5 HELIX 8 10 LYS B 201 ASN B 204 5 4 HELIX 9 5 SER C 121 SER C 127 1 7 HELIX 10 6 LYS C 183 GLU C 187 1 5 HELIX 11 11 THR D 28 TYR D 32 5 5 HELIX 12 12 ARG D 83 THR D 87 5 5 HELIX 13 13 SER D 156 ALA D 158 5 3 HELIX 14 14 LYS D 201 ASN D 204 5 4 SHEET 1 A 4 GLN A 6 SER A 7 0 SHEET 2 A 4 ALA A 19 ARG A 24 -1 O SER A 22 N SER A 7 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O PHE A 71 N CYS A 23 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O THR A 74 SHEET 1 B 6 THR A 10 LEU A 13 0 SHEET 2 B 6 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 B 6 VAL A 85 ARG A 91 -1 N TYR A 86 O THR A 102 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 ARG A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 ASN A 53 ARG A 54 -1 O ASN A 53 N TYR A 49 SHEET 1 C 4 THR A 10 LEU A 13 0 SHEET 2 C 4 THR A 102 ILE A 106 1 O LYS A 103 N LEU A 11 SHEET 3 C 4 VAL A 85 ARG A 91 -1 N TYR A 86 O THR A 102 SHEET 4 C 4 ALA A 96 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 D 4 SER A 114 PHE A 118 0 SHEET 2 D 4 THR A 129 PHE A 139 -1 O VAL A 133 N PHE A 118 SHEET 3 D 4 TYR A 173 SER A 182 -1 O LEU A 179 N VAL A 132 SHEET 4 D 4 SER A 159 VAL A 163 -1 N GLN A 160 O THR A 178 SHEET 1 E 4 ALA A 153 LEU A 154 0 SHEET 2 E 4 LYS A 145 VAL A 150 -1 N VAL A 150 O ALA A 153 SHEET 3 E 4 VAL A 191 THR A 197 -1 O THR A 197 N LYS A 145 SHEET 4 E 4 VAL A 205 ASN A 210 -1 O VAL A 205 N VAL A 196 SHEET 1 F 4 THR C 5 SER C 7 0 SHEET 2 F 4 ALA C 19 ARG C 24 -1 O ARG C 24 N THR C 5 SHEET 3 F 4 ASP C 70 ILE C 75 -1 O ILE C 75 N ALA C 19 SHEET 4 F 4 PHE C 62 SER C 67 -1 N SER C 63 O THR C 74 SHEET 1 G 6 THR C 10 LEU C 13 0 SHEET 2 G 6 THR C 102 ILE C 106 1 O GLU C 105 N LEU C 11 SHEET 3 G 6 VAL C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 G 6 LEU C 33 GLN C 38 -1 N ALA C 34 O GLN C 89 SHEET 5 G 6 ARG C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 G 6 ASN C 53 ARG C 54 -1 O ASN C 53 N TYR C 49 SHEET 1 H 4 THR C 10 LEU C 13 0 SHEET 2 H 4 THR C 102 ILE C 106 1 O GLU C 105 N LEU C 11 SHEET 3 H 4 VAL C 85 GLN C 90 -1 N TYR C 86 O THR C 102 SHEET 4 H 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 I 4 SER C 114 PHE C 118 0 SHEET 2 I 4 THR C 129 PHE C 139 -1 O VAL C 133 N PHE C 118 SHEET 3 I 4 TYR C 173 SER C 182 -1 O LEU C 175 N LEU C 136 SHEET 4 I 4 SER C 159 VAL C 163 -1 N GLN C 160 O THR C 178 SHEET 1 J 4 ALA C 153 LEU C 154 0 SHEET 2 J 4 LYS C 145 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 J 4 VAL C 191 THR C 197 -1 O GLU C 195 N GLN C 147 SHEET 4 J 4 VAL C 205 ASN C 210 -1 O VAL C 205 N VAL C 196 SHEET 1 K 4 ASN B 3 SER B 7 0 SHEET 2 K 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 K 4 THR B 77 MET B 82 -1 O MET B 82 N LEU B 18 SHEET 4 K 4 PHE B 67 ASP B 72 -1 N SER B 70 O TYR B 79 SHEET 1 L 6 GLY B 10 VAL B 12 0 SHEET 2 L 6 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 L 6 ALA B 88 GLU B 95 -1 N PHE B 90 O THR B 107 SHEET 4 L 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 L 6 LEU B 45 VAL B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 L 6 THR B 57 TYR B 59 -1 O TYR B 58 N VAL B 50 SHEET 1 M 4 GLY B 10 VAL B 12 0 SHEET 2 M 4 THR B 107 VAL B 111 1 O THR B 110 N VAL B 12 SHEET 3 M 4 ALA B 88 GLU B 95 -1 N PHE B 90 O THR B 107 SHEET 4 M 4 PHE B 100C TRP B 103 -1 O TYR B 102 N LYS B 94 SHEET 1 N 4 SER B 120 LEU B 124 0 SHEET 2 N 4 ALA B 136 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 N 4 TYR B 176 VAL B 184 -1 O TYR B 176 N TYR B 145 SHEET 4 N 4 VAL B 163 THR B 165 -1 N HIS B 164 O VAL B 181 SHEET 1 O 4 SER B 120 LEU B 124 0 SHEET 2 O 4 ALA B 136 TYR B 145 -1 O LEU B 141 N PHE B 122 SHEET 3 O 4 TYR B 176 VAL B 184 -1 O TYR B 176 N TYR B 145 SHEET 4 O 4 VAL B 169 LEU B 170 -1 N VAL B 169 O SER B 177 SHEET 1 P 3 THR B 151 TRP B 154 0 SHEET 2 P 3 TYR B 194 HIS B 200 -1 O ASN B 197 N SER B 153 SHEET 3 P 3 THR B 205 VAL B 211 -1 O VAL B 207 N VAL B 198 SHEET 1 Q 4 ASN D 3 SER D 7 0 SHEET 2 Q 4 LEU D 18 SER D 25 -1 O ALA D 23 N VAL D 5 SHEET 3 Q 4 THR D 77 MET D 82 -1 O MET D 82 N LEU D 18 SHEET 4 Q 4 PHE D 67 ASP D 72 -1 N SER D 70 O TYR D 79 SHEET 1 R 6 GLY D 10 VAL D 12 0 SHEET 2 R 6 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 R 6 ALA D 88 GLU D 95 -1 N PHE D 90 O THR D 107 SHEET 4 R 6 MET D 34 GLN D 39 -1 N VAL D 37 O TYR D 91 SHEET 5 R 6 LEU D 45 VAL D 51 -1 O GLU D 46 N ARG D 38 SHEET 6 R 6 THR D 57 TYR D 59 -1 O TYR D 58 N VAL D 50 SHEET 1 S 4 GLY D 10 VAL D 12 0 SHEET 2 S 4 THR D 107 VAL D 111 1 O THR D 110 N VAL D 12 SHEET 3 S 4 ALA D 88 GLU D 95 -1 N PHE D 90 O THR D 107 SHEET 4 S 4 PHE D 100C TRP D 103 -1 O TYR D 102 N LYS D 94 SHEET 1 T 4 SER D 120 LEU D 124 0 SHEET 2 T 4 ALA D 136 TYR D 145 -1 O GLY D 139 N LEU D 124 SHEET 3 T 4 TYR D 176 VAL D 184 -1 O LEU D 178 N VAL D 142 SHEET 4 T 4 VAL D 163 THR D 165 -1 N HIS D 164 O VAL D 181 SHEET 1 U 4 SER D 120 LEU D 124 0 SHEET 2 U 4 ALA D 136 TYR D 145 -1 O GLY D 139 N LEU D 124 SHEET 3 U 4 TYR D 176 VAL D 184 -1 O LEU D 178 N VAL D 142 SHEET 4 U 4 VAL D 169 LEU D 170 -1 N VAL D 169 O SER D 177 SHEET 1 V 3 THR D 151 TRP D 154 0 SHEET 2 V 3 THR D 195 HIS D 200 -1 O ASN D 197 N SER D 153 SHEET 3 V 3 THR D 205 THR D 210 -1 O LYS D 209 N CYS D 196 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.02 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.02 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.02 SSBOND 4 CYS B 140 CYS B 196 1555 1555 2.03 SSBOND 5 CYS C 23 CYS C 88 1555 1555 2.03 SSBOND 6 CYS C 134 CYS C 194 1555 1555 2.03 SSBOND 7 CYS D 22 CYS D 92 1555 1555 2.03 SSBOND 8 CYS D 140 CYS D 196 1555 1555 2.03 LINK O4 PO4 B 303 C2 GOL B 304 1555 1555 1.36 LINK P PO4 B 303 O3 MBG E 1 1555 1555 1.61 LINK O4 PO4 D 303 C2 GOL D 304 1555 1555 1.36 LINK P PO4 D 303 O3 MBG F 1 1555 1555 1.61 LINK O2 MBG E 1 C1 RAM E 2 1555 1555 1.44 LINK O2 MBG F 1 C1 RAM F 2 1555 1555 1.44 CISPEP 1 SER A 7 PRO A 8 0 0.01 CISPEP 2 TRP A 94 PRO A 95 0 -0.58 CISPEP 3 TYR A 140 PRO A 141 0 0.10 CISPEP 4 PHE B 146 PRO B 147 0 -0.11 CISPEP 5 GLU B 148 PRO B 149 0 0.01 CISPEP 6 SER C 7 PRO C 8 0 -0.20 CISPEP 7 TRP C 94 PRO C 95 0 0.22 CISPEP 8 TYR C 140 PRO C 141 0 0.05 CISPEP 9 PHE D 146 PRO D 147 0 -0.15 CISPEP 10 GLU D 148 PRO D 149 0 -0.22 CRYST1 143.870 66.488 118.214 90.00 111.58 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006951 0.000000 0.002749 0.00000 SCALE2 0.000000 0.015040 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009097 0.00000