HEADER ELECTRON TRANSPORT 11-OCT-12 4HIN TITLE 2.4A RESOLUTION STRUCTURE OF BOVINE CYTOCHROME B5 (S71L) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME B5; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CYB5A, CYB5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS CYTOCHROME B5, HEME, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR S.LOVELL,K.P.BATTAILE,S.PARTHASARATHY,N.SUN,S.TERZYAN,X.ZHANG, AUTHOR 2 M.RIVERA,K.KUCZERA,D.R.BENSON REVDAT 3 20-SEP-23 4HIN 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4HIN 1 REMARK REVDAT 1 16-OCT-13 4HIN 0 JRNL AUTH S.PARTHASARATHY,N.SUN,S.LOVELL,K.P.BATTAILE,S.TERZYAN, JRNL AUTH 2 X.ZHANG,M.RIVERA,K.KUCZERA,D.R.BENSON JRNL TITL 2.4A RESOLUTION STRUCTURE OF BOVINE CYTOCHROME B5 (S71L) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 761 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.57 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.19 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2751 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2326 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2602 REMARK 3 BIN R VALUE (WORKING SET) : 0.2293 REMARK 3 BIN FREE R VALUE : 0.2912 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.42 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 149 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 176 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22110 REMARK 3 B22 (A**2) : -7.91990 REMARK 3 B33 (A**2) : 9.14100 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.51760 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.332 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.422 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.917 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.887 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2860 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3940 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1201 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 80 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 445 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2860 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 343 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3015 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.01 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.34 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.84 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075513. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA CCP4_3.3.16 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15234 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 92.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 3.410 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.8759 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.51 REMARK 200 R MERGE FOR SHELL (I) : 0.66000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1EHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.91 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 8000, 100 MM TRIS, 200 REMARK 280 MM MGCL2, 10 MM CUCL2, PH 8.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 46.35450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CD CE NZ REMARK 470 LYS A 34 CG CD CE NZ REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS A 72 CD CE NZ REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 LYS B 19 CG CD CE NZ REMARK 470 LYS B 34 CG CD CE NZ REMARK 470 GLU B 43 CG CD OE1 OE2 REMARK 470 GLU B 44 CG CD OE1 OE2 REMARK 470 ARG B 47 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 LYS B 72 CD CE NZ REMARK 470 LYS C 19 CG CD CE NZ REMARK 470 LYS C 34 CG CD CE NZ REMARK 470 GLU C 43 CG CD OE1 OE2 REMARK 470 GLU C 48 CG CD OE1 OE2 REMARK 470 LYS C 72 CE NZ REMARK 470 LYS D 19 CE NZ REMARK 470 GLU D 37 CG CD OE1 OE2 REMARK 470 GLU D 44 CG CD OE1 OE2 REMARK 470 ARG D 47 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 27 -0.03 73.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HEM A 101 NA 91.3 REMARK 620 3 HEM A 101 NB 89.9 88.0 REMARK 620 4 HEM A 101 NC 84.8 175.6 94.0 REMARK 620 5 HEM A 101 ND 93.2 88.0 175.0 90.2 REMARK 620 6 HIS A 63 NE2 178.6 88.8 88.6 95.1 88.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 NE2 REMARK 620 2 HEM B 101 NA 87.4 REMARK 620 3 HEM B 101 NB 82.8 91.0 REMARK 620 4 HEM B 101 NC 85.4 171.9 91.8 REMARK 620 5 HEM B 101 ND 91.6 87.6 174.3 89.0 REMARK 620 6 HIS B 63 NE2 174.3 94.9 92.0 92.6 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 39 NE2 REMARK 620 2 HEM C 101 NA 91.6 REMARK 620 3 HEM C 101 NB 86.9 93.1 REMARK 620 4 HEM C 101 NC 88.0 174.5 92.3 REMARK 620 5 HEM C 101 ND 97.8 87.8 175.2 86.8 REMARK 620 6 HIS C 63 NE2 168.0 88.2 81.1 93.4 94.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM D 101 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 39 NE2 REMARK 620 2 HEM D 101 NA 83.1 REMARK 620 3 HEM D 101 NB 84.8 88.3 REMARK 620 4 HEM D 101 NC 85.9 169.0 91.4 REMARK 620 5 HEM D 101 ND 90.3 91.1 175.0 88.3 REMARK 620 6 HIS D 63 NE2 176.4 96.0 91.8 95.0 93.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HIL RELATED DB: PDB DBREF 4HIN A 3 84 UNP P00171 CYB5_BOVIN 8 89 DBREF 4HIN B 3 84 UNP P00171 CYB5_BOVIN 8 89 DBREF 4HIN C 3 84 UNP P00171 CYB5_BOVIN 8 89 DBREF 4HIN D 3 84 UNP P00171 CYB5_BOVIN 8 89 SEQADV 4HIN LEU A 71 UNP P00171 SER 76 ENGINEERED MUTATION SEQADV 4HIN LEU B 71 UNP P00171 SER 76 ENGINEERED MUTATION SEQADV 4HIN LEU C 71 UNP P00171 SER 76 ENGINEERED MUTATION SEQADV 4HIN LEU D 71 UNP P00171 SER 76 ENGINEERED MUTATION SEQRES 1 A 82 ALA VAL LYS TYR TYR THR LEU GLU GLU ILE GLN LYS HIS SEQRES 2 A 82 ASN ASN SER LYS SER THR TRP LEU ILE LEU HIS TYR LYS SEQRES 3 A 82 VAL TYR ASP LEU THR LYS PHE LEU GLU GLU HIS PRO GLY SEQRES 4 A 82 GLY GLU GLU VAL LEU ARG GLU GLN ALA GLY GLY ASP ALA SEQRES 5 A 82 THR GLU ASN PHE GLU ASP VAL GLY HIS SER THR ASP ALA SEQRES 6 A 82 ARG GLU LEU LEU LYS THR PHE ILE ILE GLY GLU LEU HIS SEQRES 7 A 82 PRO ASP ASP ARG SEQRES 1 B 82 ALA VAL LYS TYR TYR THR LEU GLU GLU ILE GLN LYS HIS SEQRES 2 B 82 ASN ASN SER LYS SER THR TRP LEU ILE LEU HIS TYR LYS SEQRES 3 B 82 VAL TYR ASP LEU THR LYS PHE LEU GLU GLU HIS PRO GLY SEQRES 4 B 82 GLY GLU GLU VAL LEU ARG GLU GLN ALA GLY GLY ASP ALA SEQRES 5 B 82 THR GLU ASN PHE GLU ASP VAL GLY HIS SER THR ASP ALA SEQRES 6 B 82 ARG GLU LEU LEU LYS THR PHE ILE ILE GLY GLU LEU HIS SEQRES 7 B 82 PRO ASP ASP ARG SEQRES 1 C 82 ALA VAL LYS TYR TYR THR LEU GLU GLU ILE GLN LYS HIS SEQRES 2 C 82 ASN ASN SER LYS SER THR TRP LEU ILE LEU HIS TYR LYS SEQRES 3 C 82 VAL TYR ASP LEU THR LYS PHE LEU GLU GLU HIS PRO GLY SEQRES 4 C 82 GLY GLU GLU VAL LEU ARG GLU GLN ALA GLY GLY ASP ALA SEQRES 5 C 82 THR GLU ASN PHE GLU ASP VAL GLY HIS SER THR ASP ALA SEQRES 6 C 82 ARG GLU LEU LEU LYS THR PHE ILE ILE GLY GLU LEU HIS SEQRES 7 C 82 PRO ASP ASP ARG SEQRES 1 D 82 ALA VAL LYS TYR TYR THR LEU GLU GLU ILE GLN LYS HIS SEQRES 2 D 82 ASN ASN SER LYS SER THR TRP LEU ILE LEU HIS TYR LYS SEQRES 3 D 82 VAL TYR ASP LEU THR LYS PHE LEU GLU GLU HIS PRO GLY SEQRES 4 D 82 GLY GLU GLU VAL LEU ARG GLU GLN ALA GLY GLY ASP ALA SEQRES 5 D 82 THR GLU ASN PHE GLU ASP VAL GLY HIS SER THR ASP ALA SEQRES 6 D 82 ARG GLU LEU LEU LYS THR PHE ILE ILE GLY GLU LEU HIS SEQRES 7 D 82 PRO ASP ASP ARG HET HEM A 101 43 HET CU A 102 1 HET HEM B 101 43 HET CU B 102 1 HET HEM C 101 43 HET CU C 102 1 HET HEM D 101 43 HET CU D 102 1 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CU COPPER (II) ION HETSYN HEM HEME FORMUL 5 HEM 4(C34 H32 FE N4 O4) FORMUL 6 CU 4(CU 2+) FORMUL 13 HOH *36(H2 O) HELIX 1 1 THR A 8 GLN A 13 1 6 HELIX 2 2 PHE A 35 HIS A 39 5 5 HELIX 3 3 GLY A 42 ALA A 50 1 9 HELIX 4 4 ALA A 54 GLY A 62 1 9 HELIX 5 5 SER A 64 THR A 73 1 10 HELIX 6 6 PRO A 81 ARG A 84 5 4 HELIX 7 7 THR B 8 GLN B 13 1 6 HELIX 8 8 PHE B 35 HIS B 39 5 5 HELIX 9 9 GLY B 42 ALA B 50 1 9 HELIX 10 10 ALA B 54 GLY B 62 1 9 HELIX 11 11 SER B 64 THR B 73 1 10 HELIX 12 12 PRO B 81 ARG B 84 5 4 HELIX 13 13 THR C 8 GLN C 13 1 6 HELIX 14 14 PHE C 35 HIS C 39 5 5 HELIX 15 15 GLY C 42 ALA C 50 1 9 HELIX 16 16 ALA C 54 GLY C 62 1 9 HELIX 17 17 SER C 64 THR C 73 1 10 HELIX 18 18 PRO C 81 ARG C 84 5 4 HELIX 19 19 THR D 8 GLN D 13 1 6 HELIX 20 20 PHE D 35 HIS D 39 5 5 HELIX 21 21 GLY D 42 ALA D 50 1 9 HELIX 22 22 ALA D 54 GLY D 62 1 9 HELIX 23 23 SER D 64 THR D 73 1 10 HELIX 24 24 PRO D 81 ARG D 84 5 4 SHEET 1 A 5 TYR A 6 TYR A 7 0 SHEET 2 A 5 ILE A 75 LEU A 79 1 O GLU A 78 N TYR A 7 SHEET 3 A 5 LYS A 28 ASP A 31 -1 N VAL A 29 O ILE A 76 SHEET 4 A 5 TRP A 22 LEU A 25 -1 N LEU A 23 O TYR A 30 SHEET 5 A 5 GLY A 52 ASP A 53 1 O GLY A 52 N ILE A 24 SHEET 1 B 5 TYR B 6 TYR B 7 0 SHEET 2 B 5 ILE B 75 LEU B 79 1 O GLU B 78 N TYR B 7 SHEET 3 B 5 LYS B 28 ASP B 31 -1 N VAL B 29 O ILE B 76 SHEET 4 B 5 TRP B 22 LEU B 25 -1 N LEU B 23 O TYR B 30 SHEET 5 B 5 GLY B 52 ASP B 53 1 O GLY B 52 N ILE B 24 SHEET 1 C 5 TYR C 6 TYR C 7 0 SHEET 2 C 5 ILE C 75 LEU C 79 1 O GLU C 78 N TYR C 7 SHEET 3 C 5 LYS C 28 ASP C 31 -1 N VAL C 29 O ILE C 76 SHEET 4 C 5 TRP C 22 LEU C 25 -1 N LEU C 23 O TYR C 30 SHEET 5 C 5 GLY C 52 ASP C 53 1 O GLY C 52 N ILE C 24 SHEET 1 D 5 TYR D 6 TYR D 7 0 SHEET 2 D 5 ILE D 75 LEU D 79 1 O GLU D 78 N TYR D 7 SHEET 3 D 5 LYS D 28 ASP D 31 -1 N VAL D 29 O ILE D 76 SHEET 4 D 5 TRP D 22 LEU D 25 -1 N LEU D 23 O TYR D 30 SHEET 5 D 5 GLY D 52 ASP D 53 1 O GLY D 52 N ILE D 24 LINK ND1 HIS A 26 CU CU A 102 1555 1555 2.13 LINK NE2 HIS A 39 FE HEM A 101 1555 1555 2.18 LINK NE2 HIS A 63 FE HEM A 101 1555 1555 2.20 LINK NE2 HIS B 26 CU CU B 102 1555 1555 2.00 LINK NE2 HIS B 39 FE HEM B 101 1555 1555 2.24 LINK NE2 HIS B 63 FE HEM B 101 1555 1555 2.18 LINK NE2 HIS C 26 CU CU C 102 1555 1555 1.96 LINK NE2 HIS C 39 FE HEM C 101 1555 1555 2.09 LINK NE2 HIS C 63 FE HEM C 101 1555 1555 2.30 LINK ND1 HIS D 26 CU CU D 102 1555 1555 2.00 LINK NE2 HIS D 39 FE HEM D 101 1555 1555 2.25 LINK NE2 HIS D 63 FE HEM D 101 1555 1555 2.16 SITE 1 AC1 14 LEU A 32 PHE A 35 HIS A 39 PRO A 40 SITE 2 AC1 14 GLY A 41 VAL A 45 LEU A 46 GLN A 49 SITE 3 AC1 14 PHE A 58 VAL A 61 HIS A 63 SER A 64 SITE 4 AC1 14 ALA A 67 LEU A 71 SITE 1 AC2 3 HIS A 26 ALA C 3 VAL C 4 SITE 1 AC3 15 LEU B 32 PHE B 35 HIS B 39 PRO B 40 SITE 2 AC3 15 GLY B 41 VAL B 45 LEU B 46 GLN B 49 SITE 3 AC3 15 ALA B 54 PHE B 58 VAL B 61 HIS B 63 SITE 4 AC3 15 SER B 64 LEU B 71 LYS D 19 SITE 1 AC4 1 HIS B 26 SITE 1 AC5 13 LEU C 32 PHE C 35 HIS C 39 PRO C 40 SITE 2 AC5 13 GLY C 41 LEU C 46 PHE C 58 VAL C 61 SITE 3 AC5 13 HIS C 63 SER C 64 ALA C 67 LEU C 71 SITE 4 AC5 13 PHE C 74 SITE 1 AC6 3 HIS C 26 ALA D 3 VAL D 4 SITE 1 AC7 15 LEU D 23 PHE D 35 HIS D 39 PRO D 40 SITE 2 AC7 15 GLY D 41 LEU D 46 GLN D 49 ALA D 54 SITE 3 AC7 15 PHE D 58 VAL D 61 HIS D 63 SER D 64 SITE 4 AC7 15 ALA D 67 LEU D 71 HOH D 206 SITE 1 AC8 1 HIS D 26 CRYST1 47.530 92.709 48.990 90.00 113.11 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021039 0.000000 0.008978 0.00000 SCALE2 0.000000 0.010786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022193 0.00000