HEADER TRANSCRIPTION/DNA 12-OCT-12 4HJE TITLE CRYSTAL STRUCTURE OF P53 CORE DOMAIN IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 92-291; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(*TP*CP*AP*CP*AP*AP*GP*TP*TP*AP*GP*AP*GP*AP*CP*AP*AP*GP*CP*CP*T)- COMPND 10 3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*AP*GP*GP*CP*TP*TP*GP*TP*CP*TP*CP*TP*AP*AP*CP*TP*TP*GP*TP*GP*A)- COMPND 16 3'); COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS KEYWDS TUMOR SUPPRESSOR, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.CHEN,L.CHEN REVDAT 3 28-FEB-24 4HJE 1 REMARK LINK REVDAT 2 09-OCT-13 4HJE 1 JRNL REVDAT 1 17-JUL-13 4HJE 0 JRNL AUTH Y.CHEN,X.ZHANG,A.C.DANTAS MACHADO,Y.DING,Z.CHEN,P.Z.QIN, JRNL AUTH 2 R.ROHS,L.CHEN JRNL TITL STRUCTURE OF P53 BINDING TO THE BAX RESPONSE ELEMENT REVEALS JRNL TITL 2 DNA UNWINDING AND COMPRESSION TO ACCOMMODATE BASE-PAIR JRNL TITL 3 INSERTION. JRNL REF NUCLEIC ACIDS RES. V. 41 8368 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23836939 JRNL DOI 10.1093/NAR/GKT584 REMARK 2 REMARK 2 RESOLUTION. 1.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 67896 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.6804 - 4.5942 0.99 5152 151 0.1884 0.2180 REMARK 3 2 4.5942 - 3.6469 1.00 4974 146 0.1681 0.1951 REMARK 3 3 3.6469 - 3.1860 1.00 4936 143 0.1696 0.2478 REMARK 3 4 3.1860 - 2.8947 0.99 4879 143 0.1924 0.2121 REMARK 3 5 2.8947 - 2.6873 0.98 4817 142 0.1962 0.2138 REMARK 3 6 2.6873 - 2.5289 0.98 4795 140 0.1908 0.2297 REMARK 3 7 2.5289 - 2.4022 0.98 4757 142 0.1959 0.2595 REMARK 3 8 2.4022 - 2.2976 0.97 4756 140 0.1920 0.2479 REMARK 3 9 2.2976 - 2.2092 0.96 4686 136 0.1868 0.2392 REMARK 3 10 2.2092 - 2.1330 0.95 4627 132 0.1775 0.2092 REMARK 3 11 2.1330 - 2.0663 0.94 4548 137 0.1780 0.2150 REMARK 3 12 2.0663 - 2.0072 0.93 4469 132 0.1776 0.2313 REMARK 3 13 2.0072 - 1.9544 0.91 4409 125 0.1887 0.2320 REMARK 3 14 1.9544 - 1.9070 0.86 4167 115 0.2082 0.2521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 42.31 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32320 REMARK 3 B22 (A**2) : -5.79540 REMARK 3 B33 (A**2) : 3.47220 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 7386 REMARK 3 ANGLE : 1.446 10187 REMARK 3 CHIRALITY : 0.090 1114 REMARK 3 PLANARITY : 0.005 1194 REMARK 3 DIHEDRAL : 18.953 2840 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A REMARK 3 ORIGIN FOR THE GROUP (A): -31.5452 14.5470 15.9247 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.1218 REMARK 3 T33: 0.0590 T12: 0.0258 REMARK 3 T13: -0.0193 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.8383 L22: 1.6576 REMARK 3 L33: 1.5511 L12: -0.5761 REMARK 3 L13: 0.1350 L23: -0.3579 REMARK 3 S TENSOR REMARK 3 S11: 0.0513 S12: 0.0209 S13: -0.0278 REMARK 3 S21: -0.0248 S22: -0.0343 S23: 0.0903 REMARK 3 S31: -0.0411 S32: -0.2187 S33: -0.0561 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B REMARK 3 ORIGIN FOR THE GROUP (A): -34.0777 -28.5197 17.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.1890 REMARK 3 T33: 0.2068 T12: 0.0114 REMARK 3 T13: -0.0215 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.0709 L22: 2.1941 REMARK 3 L33: 2.0363 L12: 0.2189 REMARK 3 L13: -0.4336 L23: 0.1772 REMARK 3 S TENSOR REMARK 3 S11: -0.0056 S12: 0.0959 S13: -0.0609 REMARK 3 S21: 0.0545 S22: 0.0889 S23: 0.1279 REMARK 3 S31: 0.1990 S32: 0.0141 S33: -0.0677 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C REMARK 3 ORIGIN FOR THE GROUP (A): -1.0217 -42.6310 17.2557 REMARK 3 T TENSOR REMARK 3 T11: 0.1675 T22: 0.1766 REMARK 3 T33: 0.2084 T12: 0.0490 REMARK 3 T13: 0.0108 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.1103 L22: 3.4563 REMARK 3 L33: 2.1077 L12: -0.6811 REMARK 3 L13: -0.4374 L23: -0.5685 REMARK 3 S TENSOR REMARK 3 S11: 0.0618 S12: 0.1011 S13: -0.0098 REMARK 3 S21: -0.2377 S22: -0.1742 S23: -0.3252 REMARK 3 S31: 0.1319 S32: 0.1774 S33: 0.0971 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D REMARK 3 ORIGIN FOR THE GROUP (A): 1.4959 0.4784 16.2461 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.1149 REMARK 3 T33: 0.1078 T12: 0.0111 REMARK 3 T13: -0.0048 T23: 0.0173 REMARK 3 L TENSOR REMARK 3 L11: 0.3664 L22: 2.6765 REMARK 3 L33: 1.5448 L12: 0.2115 REMARK 3 L13: 0.4158 L23: -0.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0164 S13: -0.1323 REMARK 3 S21: 0.0811 S22: 0.0509 S23: -0.2468 REMARK 3 S31: 0.0353 S32: 0.0522 S33: -0.0544 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 ATOM PAIRS NUMBER : 1555 REMARK 3 RMSD : 0.058 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 SELECTION : CHAIN C AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 ATOM PAIRS NUMBER : 1555 REMARK 3 RMSD : 0.044 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 SELECTION : CHAIN D AND (RESSEQ 92:223 OR RESSEQ REMARK 3 226:291 ) REMARK 3 ATOM PAIRS NUMBER : 1555 REMARK 3 RMSD : 0.054 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HJE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075539. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67896 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.910 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.71000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.81700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.94000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.81700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.71000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.94000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 99 OE2 GLU D 224 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OG SER A 183 O SER D 95 1455 1.97 REMARK 500 OG SER B 261 O LEU D 188 4445 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 267 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 267 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG B 267 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG B 267 NE - CZ - NH1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG B 267 NE - CZ - NH2 ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG C 267 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG C 267 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG D 267 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG D 267 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DA E 3 O5' - C5' - C4' ANGL. DEV. = -5.7 DEGREES REMARK 500 DA E 5 O4' - C1' - N9 ANGL. DEV. = -5.0 DEGREES REMARK 500 DA E 6 O4' - C1' - N9 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 DA E 12 O5' - C5' - C4' ANGL. DEV. = -5.1 DEGREES REMARK 500 DC E 15 P - O5' - C5' ANGL. DEV. = -14.1 DEGREES REMARK 500 DC E 15 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC E 15 O4' - C1' - N1 ANGL. DEV. = 2.5 DEGREES REMARK 500 DA E 16 O4' - C1' - N9 ANGL. DEV. = -8.6 DEGREES REMARK 500 DA E 17 C3' - C2' - C1' ANGL. DEV. = -5.3 DEGREES REMARK 500 DA E 17 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DA E 17 N1 - C6 - N6 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC E 20 C3' - C2' - C1' ANGL. DEV. = -6.9 DEGREES REMARK 500 DC E 20 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT F 5 N3 - C2 - O2 ANGL. DEV. = -5.5 DEGREES REMARK 500 DT F 6 O4' - C1' - N1 ANGL. DEV. = 3.6 DEGREES REMARK 500 DT F 6 N3 - C2 - O2 ANGL. DEV. = -4.2 DEGREES REMARK 500 DG F 7 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 10 C3' - C2' - C1' ANGL. DEV. = -6.4 DEGREES REMARK 500 DC F 11 O4' - C1' - N1 ANGL. DEV. = 9.0 DEGREES REMARK 500 DC F 11 C3' - O3' - P ANGL. DEV. = 13.5 DEGREES REMARK 500 DT F 12 C5' - C4' - C3' ANGL. DEV. = 7.8 DEGREES REMARK 500 DT F 12 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DC F 15 C1' - O4' - C4' ANGL. DEV. = -8.1 DEGREES REMARK 500 DC F 15 O4' - C1' - N1 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT F 16 N3 - C2 - O2 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT F 17 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DG F 18 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 121 55.00 -114.97 REMARK 500 ALA A 138 -0.02 73.87 REMARK 500 VAL A 225 120.95 -39.29 REMARK 500 SER B 121 55.04 -115.94 REMARK 500 VAL B 225 8.53 -69.59 REMARK 500 SER C 121 55.40 -114.19 REMARK 500 VAL C 225 114.49 -31.12 REMARK 500 SER D 121 55.49 -115.13 REMARK 500 ALA D 138 -0.09 72.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 103.1 REMARK 620 3 CYS A 238 SG 110.4 108.3 REMARK 620 4 CYS A 242 SG 113.9 105.5 114.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 102.9 REMARK 620 3 CYS B 238 SG 112.2 109.7 REMARK 620 4 CYS B 242 SG 115.3 102.7 112.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 103.9 REMARK 620 3 CYS C 238 SG 112.3 109.2 REMARK 620 4 CYS C 242 SG 112.5 103.9 114.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 HIS D 179 ND1 103.3 REMARK 620 3 CYS D 238 SG 110.8 111.6 REMARK 620 4 CYS D 242 SG 113.8 102.6 114.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 301 DBREF 4HJE A 92 291 UNP P04637 P53_HUMAN 92 291 DBREF 4HJE B 92 291 UNP P04637 P53_HUMAN 92 291 DBREF 4HJE C 92 291 UNP P04637 P53_HUMAN 92 291 DBREF 4HJE D 92 291 UNP P04637 P53_HUMAN 92 291 DBREF 4HJE E 1 21 PDB 4HJE 4HJE 1 21 DBREF 4HJE F 1 21 PDB 4HJE 4HJE 1 21 SEQRES 1 A 200 PRO LEU SER SER SER VAL PRO SER GLN LYS THR TYR GLN SEQRES 2 A 200 GLY SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY SEQRES 3 A 200 THR ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU SEQRES 4 A 200 ASN LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL SEQRES 5 A 200 GLN LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG SEQRES 6 A 200 VAL ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET SEQRES 7 A 200 THR GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SEQRES 8 A 200 SER ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE SEQRES 9 A 200 ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP SEQRES 10 A 200 ARG ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU SEQRES 11 A 200 PRO PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR SEQRES 12 A 200 ASN TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN SEQRES 13 A 200 ARG ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SEQRES 14 A 200 SER GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG SEQRES 15 A 200 VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU SEQRES 16 A 200 GLU ASN LEU ARG LYS SEQRES 1 B 200 PRO LEU SER SER SER VAL PRO SER GLN LYS THR TYR GLN SEQRES 2 B 200 GLY SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY SEQRES 3 B 200 THR ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU SEQRES 4 B 200 ASN LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL SEQRES 5 B 200 GLN LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG SEQRES 6 B 200 VAL ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET SEQRES 7 B 200 THR GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SEQRES 8 B 200 SER ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE SEQRES 9 B 200 ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP SEQRES 10 B 200 ARG ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU SEQRES 11 B 200 PRO PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR SEQRES 12 B 200 ASN TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN SEQRES 13 B 200 ARG ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SEQRES 14 B 200 SER GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG SEQRES 15 B 200 VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU SEQRES 16 B 200 GLU ASN LEU ARG LYS SEQRES 1 C 200 PRO LEU SER SER SER VAL PRO SER GLN LYS THR TYR GLN SEQRES 2 C 200 GLY SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY SEQRES 3 C 200 THR ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU SEQRES 4 C 200 ASN LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL SEQRES 5 C 200 GLN LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG SEQRES 6 C 200 VAL ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET SEQRES 7 C 200 THR GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SEQRES 8 C 200 SER ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE SEQRES 9 C 200 ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP SEQRES 10 C 200 ARG ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU SEQRES 11 C 200 PRO PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR SEQRES 12 C 200 ASN TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN SEQRES 13 C 200 ARG ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SEQRES 14 C 200 SER GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG SEQRES 15 C 200 VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU SEQRES 16 C 200 GLU ASN LEU ARG LYS SEQRES 1 D 200 PRO LEU SER SER SER VAL PRO SER GLN LYS THR TYR GLN SEQRES 2 D 200 GLY SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY SEQRES 3 D 200 THR ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU SEQRES 4 D 200 ASN LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL SEQRES 5 D 200 GLN LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG SEQRES 6 D 200 VAL ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET SEQRES 7 D 200 THR GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SEQRES 8 D 200 SER ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE SEQRES 9 D 200 ARG VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP SEQRES 10 D 200 ARG ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU SEQRES 11 D 200 PRO PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR SEQRES 12 D 200 ASN TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN SEQRES 13 D 200 ARG ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SEQRES 14 D 200 SER GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG SEQRES 15 D 200 VAL CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU SEQRES 16 D 200 GLU ASN LEU ARG LYS SEQRES 1 E 21 DT DC DA DC DA DA DG DT DT DA DG DA DG SEQRES 2 E 21 DA DC DA DA DG DC DC DT SEQRES 1 F 21 DA DG DG DC DT DT DG DT DC DT DC DT DA SEQRES 2 F 21 DA DC DT DT DG DT DG DA HET ZN A 301 1 HET ZN B 301 1 HET ZN C 301 1 HET ZN D 301 1 HETNAM ZN ZINC ION FORMUL 7 ZN 4(ZN 2+) FORMUL 11 HOH *832(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 CYS A 176 CYS A 182 1 7 HELIX 3 3 CYS A 277 ASN A 288 1 12 HELIX 4 4 LEU A 289 LYS A 291 5 3 HELIX 5 5 GLN B 165 MET B 169 5 5 HELIX 6 6 CYS B 176 CYS B 182 1 7 HELIX 7 7 CYS B 277 LEU B 289 1 13 HELIX 8 8 GLN C 165 MET C 169 5 5 HELIX 9 9 CYS C 176 CYS C 182 1 7 HELIX 10 10 CYS C 277 LEU C 289 1 13 HELIX 11 11 GLN D 165 MET D 169 5 5 HELIX 12 12 CYS D 176 CYS D 182 1 7 HELIX 13 13 CYS D 277 LEU D 289 1 13 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 O TRP A 146 N ARG A 110 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 VAL A 197 -1 N ARG A 196 O ASN A 235 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O PHE A 134 N THR A 125 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N THR A 253 O PHE A 270 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 O GLN B 144 N GLY B 112 SHEET 3 C 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 C 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 O PHE B 134 N THR B 125 SHEET 3 D 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 D 7 HIS B 214 PRO B 219 -1 O VAL B 218 N VAL B 157 SHEET 7 D 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 E 4 ARG C 110 GLY C 112 0 SHEET 2 E 4 CYS C 141 TRP C 146 -1 O TRP C 146 N ARG C 110 SHEET 3 E 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 E 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 F 7 CYS C 124 SER C 127 0 SHEET 2 F 7 LYS C 132 CYS C 135 -1 O LYS C 132 N SER C 127 SHEET 3 F 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 F 7 ILE C 251 GLU C 258 -1 N THR C 253 O PHE C 270 SHEET 5 F 7 ARG C 156 TYR C 163 -1 N MET C 160 O ILE C 254 SHEET 6 F 7 HIS C 214 PRO C 219 -1 O VAL C 218 N VAL C 157 SHEET 7 F 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 G 4 ARG D 110 GLY D 112 0 SHEET 2 G 4 CYS D 141 TRP D 146 -1 O GLN D 144 N GLY D 112 SHEET 3 G 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 G 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 H 7 CYS D 124 SER D 127 0 SHEET 2 H 7 LYS D 132 CYS D 135 -1 O PHE D 134 N THR D 125 SHEET 3 H 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 H 7 ILE D 251 GLU D 258 -1 N THR D 253 O PHE D 270 SHEET 5 H 7 ARG D 156 TYR D 163 -1 N ARG D 156 O GLU D 258 SHEET 6 H 7 HIS D 214 PRO D 219 -1 O VAL D 218 N VAL D 157 SHEET 7 H 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.38 LINK ND1 HIS A 179 ZN ZN A 301 1555 1555 2.09 LINK SG CYS A 238 ZN ZN A 301 1555 1555 2.36 LINK SG CYS A 242 ZN ZN A 301 1555 1555 2.31 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.34 LINK ND1 HIS B 179 ZN ZN B 301 1555 1555 2.11 LINK SG CYS B 238 ZN ZN B 301 1555 1555 2.33 LINK SG CYS B 242 ZN ZN B 301 1555 1555 2.33 LINK SG CYS C 176 ZN ZN C 301 1555 1555 2.35 LINK ND1 HIS C 179 ZN ZN C 301 1555 1555 2.11 LINK SG CYS C 238 ZN ZN C 301 1555 1555 2.35 LINK SG CYS C 242 ZN ZN C 301 1555 1555 2.35 LINK SG CYS D 176 ZN ZN D 301 1555 1555 2.32 LINK ND1 HIS D 179 ZN ZN D 301 1555 1555 2.07 LINK SG CYS D 238 ZN ZN D 301 1555 1555 2.33 LINK SG CYS D 242 ZN ZN D 301 1555 1555 2.35 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 SITE 1 AC4 4 CYS D 176 HIS D 179 CYS D 238 CYS D 242 CRYST1 65.420 93.880 145.634 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015286 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010652 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006867 0.00000