HEADER SIGNALING PROTEIN 12-OCT-12 4HJF TITLE EAL DOMAIN OF PHOSPHODIESTERASE PDEA IN COMPLEX WITH C-DI-GMP AND CA++ COMPND MOL_ID: 1; COMPND 2 MOLECULE: GGDEF FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER CRESCENTUS; SOURCE 3 ORGANISM_TAXID: 190650; SOURCE 4 STRAIN: ATCC 19089 / CB15; SOURCE 5 GENE: 943316, CC_3396; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, EAL DOMAIN, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,C.MASSA,T.SCHIRMER, AUTHOR 2 A.JOACHIMIAK,W.F.ANDERSON,MIDWEST CENTER FOR STRUCTURAL GENOMICS AUTHOR 3 (MCSG) REVDAT 6 06-DEC-23 4HJF 1 REMARK REVDAT 5 20-SEP-23 4HJF 1 REMARK SEQADV HETSYN LINK REVDAT 4 15-NOV-17 4HJF 1 REMARK REVDAT 3 12-OCT-16 4HJF 1 TITLE REVDAT 2 31-AUG-16 4HJF 1 TITLE REVDAT 1 31-OCT-12 4HJF 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,C.MASSA, JRNL AUTH 2 T.SCHIRMER,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF EAL DOMAIN FROM CAULOBACTER CRESCENTUS JRNL TITL 2 IN COMPLEX WITH C-DI-GMP AND CA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1680 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1995 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 48 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.41000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 0.66000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2119 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1426 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2889 ; 1.986 ; 2.026 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3463 ; 0.991 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 270 ; 3.601 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;36.186 ;23.111 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 313 ;10.808 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;12.212 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 324 ; 0.118 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2385 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 440 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 285 A 547 REMARK 3 ORIGIN FOR THE GROUP (A): -10.9434 18.6529 -11.9638 REMARK 3 T TENSOR REMARK 3 T11: 0.0173 T22: 0.0155 REMARK 3 T33: 0.0263 T12: -0.0095 REMARK 3 T13: -0.0041 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.3866 L22: 0.5055 REMARK 3 L33: 0.5515 L12: 0.0484 REMARK 3 L13: -0.1354 L23: -0.1982 REMARK 3 S TENSOR REMARK 3 S11: -0.0168 S12: 0.0106 S13: -0.0253 REMARK 3 S21: -0.0319 S22: -0.0176 S23: 0.0062 REMARK 3 S31: -0.0008 S32: 0.0229 S33: 0.0343 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HJF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075540. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97886 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26885 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.280 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3S83 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 25% PEG 6000, 0,1 UM C-DI REMARK 280 -GMP, 1 MM CACL2, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.10100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.09500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.59300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.09500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.10100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.59300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 HIS A 221 REMARK 465 HIS A 222 REMARK 465 SER A 223 REMARK 465 SER A 224 REMARK 465 GLY A 225 REMARK 465 VAL A 226 REMARK 465 ASP A 227 REMARK 465 LEU A 228 REMARK 465 GLY A 229 REMARK 465 THR A 230 REMARK 465 GLU A 231 REMARK 465 ASN A 232 REMARK 465 LEU A 233 REMARK 465 TYR A 234 REMARK 465 PHE A 235 REMARK 465 GLN A 236 REMARK 465 SER A 237 REMARK 465 ASN A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 VAL A 241 REMARK 465 SER A 242 REMARK 465 ALA A 243 REMARK 465 GLU A 244 REMARK 465 GLY A 245 REMARK 465 GLY A 246 REMARK 465 LEU A 247 REMARK 465 ASP A 248 REMARK 465 ALA A 249 REMARK 465 PRO A 250 REMARK 465 ASP A 251 REMARK 465 ALA A 252 REMARK 465 ALA A 253 REMARK 465 GLU A 254 REMARK 465 LEU A 255 REMARK 465 LEU A 256 REMARK 465 ARG A 257 REMARK 465 ARG A 258 REMARK 465 ALA A 259 REMARK 465 GLU A 260 REMARK 465 LEU A 261 REMARK 465 ALA A 262 REMARK 465 VAL A 263 REMARK 465 GLU A 264 REMARK 465 ALA A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 ARG A 271 REMARK 465 GLY A 272 REMARK 465 GLY A 273 REMARK 465 ALA A 274 REMARK 465 ALA A 275 REMARK 465 ALA A 276 REMARK 465 TYR A 277 REMARK 465 GLY A 278 REMARK 465 ARG A 279 REMARK 465 ALA A 280 REMARK 465 MSE A 281 REMARK 465 GLU A 282 REMARK 465 THR A 283 REMARK 465 ASP A 284 REMARK 465 ALA A 548 REMARK 465 ALA A 549 REMARK 465 PRO A 550 REMARK 465 VAL A 551 REMARK 465 LYS A 552 REMARK 465 ALA A 553 REMARK 465 ARG A 554 REMARK 465 GLY A 555 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 425 80.52 -167.04 REMARK 500 TYR A 527 -65.61 -108.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 323 OE2 REMARK 620 2 ASN A 384 OD1 84.9 REMARK 620 3 GLU A 416 OE1 86.4 98.1 REMARK 620 4 ASP A 446 OD2 171.7 88.5 89.5 REMARK 620 5 C2E A 603 O11 98.2 88.8 172.1 86.8 REMARK 620 6 HOH A 712 O 80.0 164.5 84.5 106.8 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 446 OD1 REMARK 620 2 GLU A 503 OE1 129.0 REMARK 620 3 GLU A 503 OE2 84.7 48.8 REMARK 620 4 C2E A 603 O21 125.7 93.8 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 446 OD1 REMARK 620 2 ASP A 447 OD1 84.1 REMARK 620 3 ASP A 469 OD2 162.0 103.7 REMARK 620 4 GLU A 503 OE1 81.8 157.1 95.2 REMARK 620 5 C2E A 603 O21 80.7 92.0 114.8 68.0 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC106607 RELATED DB: TARGETTRACK DBREF 4HJF A 240 555 UNP Q9A310 Q9A310_CAUCR 240 555 SEQADV 4HJF MSE A 216 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 217 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 218 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 219 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 220 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 221 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF HIS A 222 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF SER A 223 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF SER A 224 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF GLY A 225 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF VAL A 226 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF ASP A 227 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF LEU A 228 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF GLY A 229 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF THR A 230 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF GLU A 231 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF ASN A 232 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF LEU A 233 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF TYR A 234 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF PHE A 235 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF GLN A 236 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF SER A 237 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF ASN A 238 UNP Q9A310 EXPRESSION TAG SEQADV 4HJF ALA A 239 UNP Q9A310 EXPRESSION TAG SEQRES 1 A 340 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 340 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA ALA VAL SEQRES 3 A 340 SER ALA GLU GLY GLY LEU ASP ALA PRO ASP ALA ALA GLU SEQRES 4 A 340 LEU LEU ARG ARG ALA GLU LEU ALA VAL GLU ALA ALA ALA SEQRES 5 A 340 ALA ALA GLY ARG GLY GLY ALA ALA ALA TYR GLY ARG ALA SEQRES 6 A 340 MSE GLU THR ASP GLY LEU SER ARG LEU ALA LEU GLU ALA SEQRES 7 A 340 ASP LEU ARG GLY ALA ILE GLY ARG GLY GLU ILE THR PRO SEQRES 8 A 340 TYR PHE GLN PRO ILE VAL ARG LEU SER THR GLY ALA LEU SEQRES 9 A 340 SER GLY PHE GLU ALA LEU ALA ARG TRP ILE HIS PRO ARG SEQRES 10 A 340 ARG GLY MSE LEU PRO PRO ASP GLU PHE LEU PRO LEU ILE SEQRES 11 A 340 GLU GLU MSE GLY LEU MSE SER GLU LEU GLY ALA HIS MSE SEQRES 12 A 340 MSE HIS ALA ALA ALA GLN GLN LEU SER THR TRP ARG ALA SEQRES 13 A 340 ALA HIS PRO ALA MSE GLY ASN LEU THR VAL SER VAL ASN SEQRES 14 A 340 LEU SER THR GLY GLU ILE ASP ARG PRO GLY LEU VAL ALA SEQRES 15 A 340 ASP VAL ALA GLU THR LEU ARG VAL ASN ARG LEU PRO ARG SEQRES 16 A 340 GLY ALA LEU LYS LEU GLU VAL THR GLU SER ASP ILE MSE SEQRES 17 A 340 ARG ASP PRO GLU ARG ALA ALA VAL ILE LEU LYS THR LEU SEQRES 18 A 340 ARG ASP ALA GLY ALA GLY LEU ALA LEU ASP ASP PHE GLY SEQRES 19 A 340 THR GLY PHE SER SER LEU SER TYR LEU THR ARG LEU PRO SEQRES 20 A 340 PHE ASP THR LEU LYS ILE ASP ARG TYR PHE VAL ARG THR SEQRES 21 A 340 MSE GLY ASN ASN ALA GLY SER ALA LYS ILE VAL ARG SER SEQRES 22 A 340 VAL VAL LYS LEU GLY GLN ASP LEU ASP LEU GLU VAL VAL SEQRES 23 A 340 ALA GLU GLY VAL GLU ASN ALA GLU MSE ALA HIS ALA LEU SEQRES 24 A 340 GLN SER LEU GLY CYS ASP TYR GLY GLN GLY PHE GLY TYR SEQRES 25 A 340 ALA PRO ALA LEU SER PRO GLN GLU ALA GLU VAL TYR LEU SEQRES 26 A 340 ASN GLU ALA TYR VAL ASP GLY ALA ALA PRO VAL LYS ALA SEQRES 27 A 340 ARG GLY MODRES 4HJF MSE A 335 MET SELENOMETHIONINE MODRES 4HJF MSE A 348 MET SELENOMETHIONINE MODRES 4HJF MSE A 351 MET SELENOMETHIONINE MODRES 4HJF MSE A 358 MET SELENOMETHIONINE MODRES 4HJF MSE A 359 MET SELENOMETHIONINE MODRES 4HJF MSE A 376 MET SELENOMETHIONINE MODRES 4HJF MSE A 423 MET SELENOMETHIONINE MODRES 4HJF MSE A 476 MET SELENOMETHIONINE MODRES 4HJF MSE A 510 MET SELENOMETHIONINE HET MSE A 335 8 HET MSE A 348 8 HET MSE A 351 16 HET MSE A 358 8 HET MSE A 359 8 HET MSE A 376 8 HET MSE A 423 8 HET MSE A 476 8 HET MSE A 510 8 HET CA A 601 1 HET CA A 602 2 HET C2E A 603 46 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 CA 2(CA 2+) FORMUL 4 C2E C20 H24 N10 O14 P2 FORMUL 5 HOH *212(H2 O) HELIX 1 1 GLY A 285 ILE A 299 1 15 HELIX 2 2 PRO A 337 MSE A 348 1 12 HELIX 3 3 LEU A 350 HIS A 373 1 24 HELIX 4 4 GLY A 394 ASN A 406 1 13 HELIX 5 5 GLU A 419 ARG A 424 1 6 HELIX 6 6 ASP A 425 GLY A 440 1 16 HELIX 7 7 SER A 453 LEU A 461 5 9 HELIX 8 8 ASP A 469 MSE A 476 1 8 HELIX 9 9 ASN A 479 ASP A 497 1 19 HELIX 10 10 ASN A 507 LEU A 517 1 11 HELIX 11 11 SER A 532 ASP A 546 1 15 SHEET 1 A10 GLY A 334 LEU A 336 0 SHEET 2 A10 LEU A 319 HIS A 330 -1 N TRP A 328 O LEU A 336 SHEET 3 A10 THR A 380 ASN A 384 1 O SER A 382 N ALA A 324 SHEET 4 A10 LEU A 413 THR A 418 1 O GLU A 416 N VAL A 383 SHEET 5 A10 GLY A 442 ASP A 446 1 O ASP A 446 N VAL A 417 SHEET 6 A10 THR A 465 ILE A 468 1 O THR A 465 N LEU A 445 SHEET 7 A10 GLU A 499 GLU A 503 1 O VAL A 501 N ILE A 468 SHEET 8 A10 TYR A 521 GLN A 523 1 O TYR A 521 N ALA A 502 SHEET 9 A10 ILE A 304 ARG A 313 -1 N VAL A 312 O GLY A 522 SHEET 10 A10 LEU A 319 HIS A 330 -1 O SER A 320 N ILE A 311 LINK C GLY A 334 N MSE A 335 1555 1555 1.33 LINK C MSE A 335 N LEU A 336 1555 1555 1.34 LINK C GLU A 347 N MSE A 348 1555 1555 1.32 LINK C MSE A 348 N GLY A 349 1555 1555 1.35 LINK C LEU A 350 N AMSE A 351 1555 1555 1.33 LINK C LEU A 350 N BMSE A 351 1555 1555 1.33 LINK C AMSE A 351 N SER A 352 1555 1555 1.32 LINK C BMSE A 351 N SER A 352 1555 1555 1.33 LINK C HIS A 357 N MSE A 358 1555 1555 1.33 LINK C MSE A 358 N MSE A 359 1555 1555 1.32 LINK C MSE A 359 N HIS A 360 1555 1555 1.34 LINK C ALA A 375 N MSE A 376 1555 1555 1.32 LINK C MSE A 376 N GLY A 377 1555 1555 1.33 LINK C ILE A 422 N MSE A 423 1555 1555 1.33 LINK C MSE A 423 N ARG A 424 1555 1555 1.33 LINK C THR A 475 N MSE A 476 1555 1555 1.34 LINK C MSE A 476 N GLY A 477 1555 1555 1.33 LINK C GLU A 509 N MSE A 510 1555 1555 1.33 LINK C MSE A 510 N ALA A 511 1555 1555 1.33 LINK OE2 GLU A 323 CA CA A 601 1555 1555 2.23 LINK OD1 ASN A 384 CA CA A 601 1555 1555 2.38 LINK OE1 GLU A 416 CA CA A 601 1555 1555 2.25 LINK OD2 ASP A 446 CA CA A 601 1555 1555 2.21 LINK OD1 ASP A 446 CA A CA A 602 1555 1555 2.20 LINK OD1 ASP A 446 CA B CA A 602 1555 1555 3.19 LINK OD1 ASP A 447 CA B CA A 602 1555 1555 2.36 LINK OD2 ASP A 469 CA B CA A 602 1555 1555 2.63 LINK OE1 GLU A 503 CA A CA A 602 1555 1555 2.40 LINK OE2 GLU A 503 CA A CA A 602 1555 1555 2.74 LINK OE1 GLU A 503 CA B CA A 602 1555 1555 3.15 LINK CA CA A 601 O11 C2E A 603 1555 1555 2.18 LINK CA CA A 601 O HOH A 712 1555 1555 2.37 LINK CA A CA A 602 O21 C2E A 603 1555 1555 2.35 LINK CA B CA A 602 O21 C2E A 603 1555 1555 3.06 SITE 1 AC1 6 GLU A 323 ASN A 384 GLU A 416 ASP A 446 SITE 2 AC1 6 C2E A 603 HOH A 712 SITE 1 AC2 5 ASP A 446 ASP A 447 ASP A 469 GLU A 503 SITE 2 AC2 5 C2E A 603 SITE 1 AC3 31 GLN A 309 GLU A 323 LEU A 325 ALA A 326 SITE 2 AC3 31 ARG A 327 PRO A 338 LEU A 342 MSE A 358 SITE 3 AC3 31 ASN A 384 SER A 386 ASP A 446 ARG A 470 SITE 4 AC3 31 GLU A 503 GLY A 504 GLU A 506 GLY A 524 SITE 5 AC3 31 PHE A 525 CA A 601 CA A 602 HOH A 710 SITE 6 AC3 31 HOH A 715 HOH A 733 HOH A 752 HOH A 778 SITE 7 AC3 31 HOH A 782 HOH A 797 HOH A 802 HOH A 825 SITE 8 AC3 31 HOH A 829 HOH A 833 HOH A 851 CRYST1 62.202 63.186 66.190 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016077 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015826 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015108 0.00000