HEADER LYASE 14-OCT-12 4HJY TITLE 2.4 A CRYSTAL STRUCTURE OF E. COLI MLTE-E64Q WITH BOUND CHITOPENTAOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-TYPE MEMBRANE-BOUND LYTIC MUREIN TRANSGLYCOSYLASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 17-203; COMPND 5 SYNONYM: PEPTIDOGLYCAN LYTIC ENDOTRANSGLYCOSYLASE; COMPND 6 EC: 4.2.2.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: EMTA, MLTE, SLTZ, YCGP, B1193, JW5821; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: B834(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PBADNLIC-MLTE KEYWDS GOOSE LYSOZYME-LIKE STRUCTURE, LYTIC TRANSGLYCOSYLASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.FIBRIANSAH,F.I.GLIUBICH,A.-M.W.H.THUNNISSEN REVDAT 5 20-SEP-23 4HJY 1 HETSYN REVDAT 4 29-JUL-20 4HJY 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 26-DEC-12 4HJY 1 JRNL REVDAT 2 31-OCT-12 4HJY 1 JRNL REVDAT 1 24-OCT-12 4HJY 0 SPRSDE 24-OCT-12 4HJY 3T1Z JRNL AUTH G.FIBRIANSAH,F.I.GLIUBICH,A.M.THUNNISSEN JRNL TITL ON THE MECHANISM OF PEPTIDOGLYCAN BINDING AND CLEAVAGE BY JRNL TITL 2 THE ENDO-SPECIFIC LYTIC TRANSGLYCOSYLASE MLTE FROM JRNL TITL 3 ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 51 9164 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 23075328 JRNL DOI 10.1021/BI300900T REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 NUMBER OF REFLECTIONS : 13455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.0302 - 5.1659 0.95 1277 127 0.2068 0.2592 REMARK 3 2 5.1659 - 4.1023 0.97 1237 119 0.1715 0.2306 REMARK 3 3 4.1023 - 3.5844 0.99 1235 131 0.1700 0.2213 REMARK 3 4 3.5844 - 3.2569 0.98 1209 143 0.1799 0.2562 REMARK 3 5 3.2569 - 3.0236 0.97 1205 145 0.2044 0.2721 REMARK 3 6 3.0236 - 2.8454 0.97 1196 140 0.2060 0.2773 REMARK 3 7 2.8454 - 2.7030 0.97 1178 154 0.2322 0.2972 REMARK 3 8 2.7030 - 2.5853 0.97 1184 123 0.2242 0.3131 REMARK 3 9 2.5853 - 2.4858 0.97 1201 149 0.2486 0.2886 REMARK 3 10 2.4858 - 2.4000 0.96 1191 111 0.2767 0.3537 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2986 REMARK 3 ANGLE : 1.327 4072 REMARK 3 CHIRALITY : 0.063 466 REMARK 3 PLANARITY : 0.007 522 REMARK 3 DIHEDRAL : 24.219 1154 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 21 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6475 44.5525 40.4309 REMARK 3 T TENSOR REMARK 3 T11: 0.8181 T22: 0.3534 REMARK 3 T33: 0.2837 T12: -0.0538 REMARK 3 T13: -0.0606 T23: 0.0891 REMARK 3 L TENSOR REMARK 3 L11: 3.2346 L22: 4.6411 REMARK 3 L33: 2.8913 L12: -0.0154 REMARK 3 L13: -1.4657 L23: -1.0285 REMARK 3 S TENSOR REMARK 3 S11: -0.3035 S12: 0.7254 S13: -0.1354 REMARK 3 S21: -1.7684 S22: 0.5643 S23: -0.3519 REMARK 3 S31: 0.2120 S32: 0.1346 S33: -0.1382 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3258 50.4872 59.5160 REMARK 3 T TENSOR REMARK 3 T11: 0.3947 T22: 0.3175 REMARK 3 T33: 0.2043 T12: -0.0873 REMARK 3 T13: 0.0346 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 5.8666 L22: 2.8641 REMARK 3 L33: 5.9062 L12: 1.5519 REMARK 3 L13: 1.1848 L23: -1.2875 REMARK 3 S TENSOR REMARK 3 S11: -0.4195 S12: -0.3081 S13: 0.3647 REMARK 3 S21: -0.1576 S22: -0.1595 S23: 0.0462 REMARK 3 S31: 0.2144 S32: -0.6266 S33: 0.4281 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 102 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3528 46.5428 50.0433 REMARK 3 T TENSOR REMARK 3 T11: 0.3094 T22: 0.1324 REMARK 3 T33: 0.3278 T12: -0.0389 REMARK 3 T13: -0.0926 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: 5.7700 L22: 3.2790 REMARK 3 L33: 4.0173 L12: 1.7372 REMARK 3 L13: -0.4521 L23: -0.1182 REMARK 3 S TENSOR REMARK 3 S11: -0.3721 S12: -0.5498 S13: 0.1637 REMARK 3 S21: -0.3684 S22: 0.2415 S23: 0.4430 REMARK 3 S31: 0.3564 S32: -0.3496 S33: 0.1233 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 137 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0825 56.3152 36.8953 REMARK 3 T TENSOR REMARK 3 T11: 1.0556 T22: 0.4299 REMARK 3 T33: 0.4031 T12: 0.0053 REMARK 3 T13: -0.2994 T23: 0.0149 REMARK 3 L TENSOR REMARK 3 L11: 2.3866 L22: 4.2250 REMARK 3 L33: 3.5748 L12: 0.6630 REMARK 3 L13: -0.1056 L23: 0.7014 REMARK 3 S TENSOR REMARK 3 S11: -0.3389 S12: 0.4299 S13: 0.4039 REMARK 3 S21: -1.3686 S22: 0.0592 S23: 0.8149 REMARK 3 S31: -0.4840 S32: -0.2938 S33: 0.2757 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 21 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2445 39.3546 79.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1926 T22: 0.1648 REMARK 3 T33: 0.2225 T12: -0.0078 REMARK 3 T13: 0.0588 T23: 0.0046 REMARK 3 L TENSOR REMARK 3 L11: 3.3083 L22: 3.7630 REMARK 3 L33: 4.2129 L12: 1.6519 REMARK 3 L13: 1.0933 L23: -0.0200 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: -0.3245 S13: 0.2147 REMARK 3 S21: 0.6498 S22: 0.1469 S23: 0.3500 REMARK 3 S31: 0.0077 S32: -0.2726 S33: -0.2089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 85 THROUGH 101 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7285 33.1343 60.9129 REMARK 3 T TENSOR REMARK 3 T11: 0.3756 T22: 0.2958 REMARK 3 T33: 0.1928 T12: 0.0036 REMARK 3 T13: -0.0152 T23: -0.0401 REMARK 3 L TENSOR REMARK 3 L11: 9.9083 L22: 3.2557 REMARK 3 L33: 4.5963 L12: 1.4996 REMARK 3 L13: 1.1351 L23: -1.8715 REMARK 3 S TENSOR REMARK 3 S11: 0.1549 S12: 0.5670 S13: -0.6237 REMARK 3 S21: -0.7188 S22: 0.1304 S23: -0.1690 REMARK 3 S31: 0.5286 S32: -0.3412 S33: -0.2755 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 102 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.5664 37.3044 67.3744 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.2251 REMARK 3 T33: 0.3060 T12: 0.0022 REMARK 3 T13: 0.0090 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.0400 L22: 3.8682 REMARK 3 L33: 2.5611 L12: -0.0749 REMARK 3 L13: -1.4157 L23: 1.6494 REMARK 3 S TENSOR REMARK 3 S11: -0.1934 S12: 0.2623 S13: 0.5809 REMARK 3 S21: 0.0591 S22: 0.1467 S23: 0.4556 REMARK 3 S31: -0.0066 S32: 0.0086 S33: 0.0156 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.3557 27.2622 73.9014 REMARK 3 T TENSOR REMARK 3 T11: 0.1947 T22: 0.2581 REMARK 3 T33: 0.4104 T12: 0.0258 REMARK 3 T13: 0.0829 T23: 0.0464 REMARK 3 L TENSOR REMARK 3 L11: 2.9198 L22: 3.4353 REMARK 3 L33: 4.2987 L12: 1.3085 REMARK 3 L13: -0.5317 L23: 0.7729 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: -0.0776 S13: 0.1938 REMARK 3 S21: 0.1288 S22: 0.0292 S23: 0.4840 REMARK 3 S31: 0.3494 S32: -0.2531 S33: -0.1062 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9395 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF SI(111) REMARK 200 OPTICS : TORODIAL FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13461 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 72.288 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49800 REMARK 200 R SYM FOR SHELL (I) : 0.49800 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3T36 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SUCCINIC ACID, PH 5.5, 15% REMARK 280 PEG3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 16.81000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 HIS A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 GLU A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 TYR A 13 REMARK 465 PHE A 14 REMARK 465 GLN A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 MET B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 HIS B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 GLY B 9 REMARK 465 GLU B 10 REMARK 465 ASN B 11 REMARK 465 LEU B 12 REMARK 465 TYR B 13 REMARK 465 PHE B 14 REMARK 465 GLN B 15 REMARK 465 GLY B 16 REMARK 465 SER B 17 REMARK 465 SER B 18 REMARK 465 LYS B 19 REMARK 465 HIS B 20 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 108 O HOH B 424 1.98 REMARK 500 O GLY A 51 O HOH A 423 2.09 REMARK 500 O SER B 73 O HOH B 433 2.11 REMARK 500 SD MET A 37 O HOH A 432 2.17 REMARK 500 O PRO B 25 NH2 ARG B 191 2.17 REMARK 500 O GLY B 47 O HOH B 425 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 410 O HOH B 436 2547 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 38.43 77.79 REMARK 500 THR A 87 -78.77 -123.87 REMARK 500 ASN B 76 36.18 75.34 REMARK 500 THR B 87 -76.97 -124.11 REMARK 500 ALA B 202 21.76 -76.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3T36 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF LYTIC TRANSGLYCOSYLASE MLTE FROM ESCHERICHA REMARK 900 COLI REMARK 900 RELATED ID: 4HJV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF E. COLI MLTE WITH BOUND BULGECIN AND REMARK 900 MURODIPEPTIDE REMARK 900 RELATED ID: 4HJZ RELATED DB: PDB REMARK 900 1.9 A CRYSTAL STRUCTURE OF E. COLI MLTE-E64Q WITH BOUND REMARK 900 CHITOPENTAOSE DBREF 4HJY A 17 203 UNP P0C960 EMTA_ECOLI 17 203 DBREF 4HJY B 17 203 UNP P0C960 EMTA_ECOLI 17 203 SEQADV 4HJY MET A -2 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A -1 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 0 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 1 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 2 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 3 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 4 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 5 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 6 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 7 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS A 8 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLY A 9 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLU A 10 UNP P0C960 EXPRESSION TAG SEQADV 4HJY ASN A 11 UNP P0C960 EXPRESSION TAG SEQADV 4HJY LEU A 12 UNP P0C960 EXPRESSION TAG SEQADV 4HJY TYR A 13 UNP P0C960 EXPRESSION TAG SEQADV 4HJY PHE A 14 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLN A 15 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLY A 16 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLN A 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQADV 4HJY MET B -2 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B -1 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 0 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 1 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 2 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 3 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 4 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 5 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 6 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 7 UNP P0C960 EXPRESSION TAG SEQADV 4HJY HIS B 8 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLY B 9 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLU B 10 UNP P0C960 EXPRESSION TAG SEQADV 4HJY ASN B 11 UNP P0C960 EXPRESSION TAG SEQADV 4HJY LEU B 12 UNP P0C960 EXPRESSION TAG SEQADV 4HJY TYR B 13 UNP P0C960 EXPRESSION TAG SEQADV 4HJY PHE B 14 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLN B 15 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLY B 16 UNP P0C960 EXPRESSION TAG SEQADV 4HJY GLN B 64 UNP P0C960 GLU 64 ENGINEERED MUTATION SEQRES 1 A 206 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU SEQRES 2 A 206 ASN LEU TYR PHE GLN GLY SER SER LYS HIS ASP TYR THR SEQRES 3 A 206 ASN PRO PRO TRP ASN ALA LYS VAL PRO VAL GLN ARG ALA SEQRES 4 A 206 MET GLN TRP MET PRO ILE SER GLN LYS ALA GLY ALA ALA SEQRES 5 A 206 TRP GLY VAL ASP PRO GLN LEU ILE THR ALA ILE ILE ALA SEQRES 6 A 206 ILE GLN SER GLY GLY ASN PRO ASN ALA VAL SER LYS SER SEQRES 7 A 206 ASN ALA ILE GLY LEU MET GLN LEU LYS ALA SER THR SER SEQRES 8 A 206 GLY ARG ASP VAL TYR ARG ARG MET GLY TRP SER GLY GLU SEQRES 9 A 206 PRO THR THR SER GLU LEU LYS ASN PRO GLU ARG ASN ILE SEQRES 10 A 206 SER MET GLY ALA ALA TYR LEU ASN ILE LEU GLU THR GLY SEQRES 11 A 206 PRO LEU ALA GLY ILE GLU ASP PRO LYS VAL LEU GLN TYR SEQRES 12 A 206 ALA LEU VAL VAL SER TYR ALA ASN GLY ALA GLY ALA LEU SEQRES 13 A 206 LEU ARG THR PHE SER SER ASP ARG LYS LYS ALA ILE SER SEQRES 14 A 206 LYS ILE ASN ASP LEU ASP ALA ASP GLU PHE LEU GLU HIS SEQRES 15 A 206 VAL ALA ARG ASN HIS PRO ALA PRO GLN ALA PRO ARG TYR SEQRES 16 A 206 ILE TYR LYS LEU GLU GLN ALA LEU ASP ALA MET SEQRES 1 B 206 MET HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS GLY GLU SEQRES 2 B 206 ASN LEU TYR PHE GLN GLY SER SER LYS HIS ASP TYR THR SEQRES 3 B 206 ASN PRO PRO TRP ASN ALA LYS VAL PRO VAL GLN ARG ALA SEQRES 4 B 206 MET GLN TRP MET PRO ILE SER GLN LYS ALA GLY ALA ALA SEQRES 5 B 206 TRP GLY VAL ASP PRO GLN LEU ILE THR ALA ILE ILE ALA SEQRES 6 B 206 ILE GLN SER GLY GLY ASN PRO ASN ALA VAL SER LYS SER SEQRES 7 B 206 ASN ALA ILE GLY LEU MET GLN LEU LYS ALA SER THR SER SEQRES 8 B 206 GLY ARG ASP VAL TYR ARG ARG MET GLY TRP SER GLY GLU SEQRES 9 B 206 PRO THR THR SER GLU LEU LYS ASN PRO GLU ARG ASN ILE SEQRES 10 B 206 SER MET GLY ALA ALA TYR LEU ASN ILE LEU GLU THR GLY SEQRES 11 B 206 PRO LEU ALA GLY ILE GLU ASP PRO LYS VAL LEU GLN TYR SEQRES 12 B 206 ALA LEU VAL VAL SER TYR ALA ASN GLY ALA GLY ALA LEU SEQRES 13 B 206 LEU ARG THR PHE SER SER ASP ARG LYS LYS ALA ILE SER SEQRES 14 B 206 LYS ILE ASN ASP LEU ASP ALA ASP GLU PHE LEU GLU HIS SEQRES 15 B 206 VAL ALA ARG ASN HIS PRO ALA PRO GLN ALA PRO ARG TYR SEQRES 16 B 206 ILE TYR LYS LEU GLU GLN ALA LEU ASP ALA MET HET NAG C 1 15 HET NAG C 2 14 HET NAG C 3 14 HET NAG C 4 14 HET NAG C 5 14 HET NAG D 1 15 HET NAG D 2 14 HET NAG D 3 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 8(C8 H15 N O6) FORMUL 5 HOH *73(H2 O) HELIX 1 1 ALA A 29 MET A 37 1 9 HELIX 2 2 TRP A 39 GLY A 51 1 13 HELIX 3 3 ASP A 53 SER A 65 1 13 HELIX 4 4 THR A 87 GLY A 97 1 11 HELIX 5 5 THR A 103 ASN A 109 1 7 HELIX 6 6 ASN A 109 GLY A 127 1 19 HELIX 7 7 ASP A 134 GLY A 149 1 16 HELIX 8 8 GLY A 149 ARG A 155 1 7 HELIX 9 9 ASP A 160 ASP A 170 1 11 HELIX 10 10 ASP A 172 HIS A 184 1 13 HELIX 11 11 PRO A 187 ALA A 202 1 16 HELIX 12 12 ALA B 29 MET B 37 1 9 HELIX 13 13 TRP B 39 GLY B 51 1 13 HELIX 14 14 ASP B 53 GLY B 66 1 14 HELIX 15 15 THR B 87 MET B 96 1 10 HELIX 16 16 THR B 103 ASN B 109 1 7 HELIX 17 17 ASN B 109 GLY B 127 1 19 HELIX 18 18 ASP B 134 GLY B 149 1 16 HELIX 19 19 GLY B 149 ARG B 155 1 7 HELIX 20 20 ASP B 160 ASP B 170 1 11 HELIX 21 21 ASP B 172 HIS B 184 1 13 HELIX 22 22 PRO B 187 ALA B 202 1 16 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 NAG C 3 1555 1555 1.44 LINK O4 NAG C 3 C1 NAG C 4 1555 1555 1.45 LINK O4 NAG C 4 C1 NAG C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 NAG D 3 1555 1555 1.43 CISPEP 1 ASN A 24 PRO A 25 0 -2.17 CISPEP 2 ASN B 24 PRO B 25 0 8.76 CRYST1 71.540 33.620 75.220 90.00 106.05 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013978 0.000000 0.004021 0.00000 SCALE2 0.000000 0.029744 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013834 0.00000