HEADER SIGNALING PROTEIN/INHIBITOR 14-OCT-12 4HK2 TITLE U7UB25.2540 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBC, UBIQUITIN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS COMPUTATIONALLY DESIGNED UBIQUITIN, USP7, SIGNALING PROTEIN-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MURRAY,L.ROUGE REVDAT 2 20-SEP-23 4HK2 1 REMARK SEQADV REVDAT 1 21-NOV-12 4HK2 0 JRNL AUTH Y.ZHANG,L.ZHOU,L.ROUGE,A.H.PHILLIPS,C.LAM,P.LIU,W.SANDOVAL, JRNL AUTH 2 E.HELGASON,J.M.MURRAY,I.WERTZ,J.E.CORN JRNL TITL POTENT AND SELECTIVE INHIBITORS OF USP7/HAUSP ACTIVITY BY JRNL TITL 2 PROTEIN CONFORMATIONAL STABILIZATION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_982 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 45124 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0790 - 3.5256 0.94 2722 132 0.2344 0.2797 REMARK 3 2 3.5256 - 2.7992 1.00 2759 137 0.1839 0.2109 REMARK 3 3 2.7992 - 2.4456 1.00 2725 155 0.1974 0.2073 REMARK 3 4 2.4456 - 2.2221 1.00 2720 149 0.1767 0.2009 REMARK 3 5 2.2221 - 2.0629 1.00 2725 128 0.1759 0.2156 REMARK 3 6 2.0629 - 1.9413 1.00 2696 152 0.1816 0.2124 REMARK 3 7 1.9413 - 1.8441 1.00 2721 137 0.1802 0.2332 REMARK 3 8 1.8441 - 1.7638 1.00 2728 118 0.1905 0.2388 REMARK 3 9 1.7638 - 1.6959 1.00 2674 151 0.2018 0.2349 REMARK 3 10 1.6959 - 1.6374 1.00 2700 141 0.1947 0.2912 REMARK 3 11 1.6374 - 1.5862 1.00 2720 115 0.1965 0.2778 REMARK 3 12 1.5862 - 1.5409 1.00 2682 158 0.1949 0.2793 REMARK 3 13 1.5409 - 1.5003 1.00 2690 145 0.1944 0.2356 REMARK 3 14 1.5003 - 1.4637 0.99 2641 153 0.2123 0.2846 REMARK 3 15 1.4637 - 1.4304 0.95 2521 145 0.2186 0.3221 REMARK 3 16 1.4304 - 1.4000 0.91 2443 141 0.2206 0.2751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.47 REMARK 3 K_SOL : 0.56 REMARK 3 B_SOL : 68.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.890 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.05960 REMARK 3 B22 (A**2) : -0.05960 REMARK 3 B33 (A**2) : 0.11910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.029 2484 REMARK 3 ANGLE : 1.959 3338 REMARK 3 CHIRALITY : 0.117 369 REMARK 3 PLANARITY : 0.008 428 REMARK 3 DIHEDRAL : 15.665 984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ -1:71 ) REMARK 3 SELECTION : CHAIN 'B' AND (RESSEQ -1:71 ) REMARK 3 ATOM PAIRS NUMBER : 575 REMARK 3 RMSD : 0.938 REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ -1:71 ) REMARK 3 SELECTION : CHAIN 'C' AND (RESSEQ -1:71 ) REMARK 3 ATOM PAIRS NUMBER : 580 REMARK 3 RMSD : 0.610 REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: CHAIN 'A' AND (RESSEQ -1:71 ) REMARK 3 SELECTION : CHAIN 'D' AND (RESSEQ -1:71 ) REMARK 3 ATOM PAIRS NUMBER : 575 REMARK 3 RMSD : 0.794 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45185 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 43.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.03100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMSO4 AND 0.1M CITRIC ACID PH REMARK 280 4.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 18.15233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.30467 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.30467 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 18.15233 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 259 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 149 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 159 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 73 REMARK 465 ARG A 74 REMARK 465 GLY A 75 REMARK 465 GLY A 76 REMARK 465 LEU B 73 REMARK 465 ARG B 74 REMARK 465 GLY B 75 REMARK 465 GLY B 76 REMARK 465 ARG C 74 REMARK 465 GLY C 75 REMARK 465 GLY C 76 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU D 24 N GLY D 53 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 24 CB GLU B 24 CG -0.142 REMARK 500 ASP D 52 CB ASP D 52 CG -0.136 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 8 CA - C - O ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 8 CA - C - O ANGL. DEV. = 17.6 DEGREES REMARK 500 ARG A 8 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 ARG A 8 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP A 39 CB - CG - OD1 ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 54 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ASP B 39 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 72 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 72 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP C 39 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG C 54 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 71 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 8 1.51 -60.89 REMARK 500 ARG A 8 1.70 -61.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HJK RELATED DB: PDB REMARK 900 U7UB7 DBREF 4HK2 A 1 76 UNP P0CG48 UBC_HUMAN 75 150 DBREF 4HK2 B 1 76 UNP P0CG48 UBC_HUMAN 75 150 DBREF 4HK2 C 1 76 UNP P0CG48 UBC_HUMAN 75 150 DBREF 4HK2 D 1 76 UNP P0CG48 UBC_HUMAN 75 150 SEQADV 4HK2 GLY A -1 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 SER A 0 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 PHE A 7 UNP P0CG48 THR 81 ENGINEERED MUTATION SEQADV 4HK2 ARG A 8 UNP P0CG48 LEU 82 ENGINEERED MUTATION SEQADV 4HK2 TYR A 13 UNP P0CG48 ILE 87 ENGINEERED MUTATION SEQADV 4HK2 LEU A 34 UNP P0CG48 GLU 108 CONFLICT SEQADV 4HK2 TRP A 42 UNP P0CG48 ARG 116 ENGINEERED MUTATION SEQADV 4HK2 ARG A 49 UNP P0CG48 GLN 123 ENGINEERED MUTATION SEQADV 4HK2 ARG A 68 UNP P0CG48 HIS 142 CONFLICT SEQADV 4HK2 GLY A 69 UNP P0CG48 LEU 143 ENGINEERED MUTATION SEQADV 4HK2 ARG A 71 UNP P0CG48 LEU 145 ENGINEERED MUTATION SEQADV 4HK2 GLY B -1 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 SER B 0 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 PHE B 7 UNP P0CG48 THR 81 ENGINEERED MUTATION SEQADV 4HK2 ARG B 8 UNP P0CG48 LEU 82 ENGINEERED MUTATION SEQADV 4HK2 TYR B 13 UNP P0CG48 ILE 87 ENGINEERED MUTATION SEQADV 4HK2 LEU B 34 UNP P0CG48 GLU 108 CONFLICT SEQADV 4HK2 TRP B 42 UNP P0CG48 ARG 116 ENGINEERED MUTATION SEQADV 4HK2 ARG B 49 UNP P0CG48 GLN 123 ENGINEERED MUTATION SEQADV 4HK2 ARG B 68 UNP P0CG48 HIS 142 CONFLICT SEQADV 4HK2 GLY B 69 UNP P0CG48 LEU 143 ENGINEERED MUTATION SEQADV 4HK2 ARG B 71 UNP P0CG48 LEU 145 ENGINEERED MUTATION SEQADV 4HK2 GLY C -1 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 SER C 0 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 PHE C 7 UNP P0CG48 THR 81 ENGINEERED MUTATION SEQADV 4HK2 ARG C 8 UNP P0CG48 LEU 82 ENGINEERED MUTATION SEQADV 4HK2 TYR C 13 UNP P0CG48 ILE 87 ENGINEERED MUTATION SEQADV 4HK2 LEU C 34 UNP P0CG48 GLU 108 CONFLICT SEQADV 4HK2 TRP C 42 UNP P0CG48 ARG 116 ENGINEERED MUTATION SEQADV 4HK2 ARG C 49 UNP P0CG48 GLN 123 ENGINEERED MUTATION SEQADV 4HK2 ARG C 68 UNP P0CG48 HIS 142 CONFLICT SEQADV 4HK2 GLY C 69 UNP P0CG48 LEU 143 ENGINEERED MUTATION SEQADV 4HK2 ARG C 71 UNP P0CG48 LEU 145 ENGINEERED MUTATION SEQADV 4HK2 GLY D -1 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 SER D 0 UNP P0CG48 EXPRESSION TAG SEQADV 4HK2 PHE D 7 UNP P0CG48 THR 81 ENGINEERED MUTATION SEQADV 4HK2 ARG D 8 UNP P0CG48 LEU 82 ENGINEERED MUTATION SEQADV 4HK2 TYR D 13 UNP P0CG48 ILE 87 ENGINEERED MUTATION SEQADV 4HK2 LEU D 34 UNP P0CG48 GLU 108 CONFLICT SEQADV 4HK2 TRP D 42 UNP P0CG48 ARG 116 ENGINEERED MUTATION SEQADV 4HK2 ARG D 49 UNP P0CG48 GLN 123 ENGINEERED MUTATION SEQADV 4HK2 ARG D 68 UNP P0CG48 HIS 142 CONFLICT SEQADV 4HK2 GLY D 69 UNP P0CG48 LEU 143 ENGINEERED MUTATION SEQADV 4HK2 ARG D 71 UNP P0CG48 LEU 145 ENGINEERED MUTATION SEQRES 1 A 78 GLY SER MET GLN ILE PHE VAL LYS PHE ARG THR GLY LYS SEQRES 2 A 78 THR TYR THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 A 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS LEU GLY ILE PRO SEQRES 4 A 78 PRO ASP GLN GLN TRP LEU ILE PHE ALA GLY LYS ARG LEU SEQRES 5 A 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 A 78 GLU SER THR LEU ARG GLY VAL ARG ARG LEU ARG GLY GLY SEQRES 1 B 78 GLY SER MET GLN ILE PHE VAL LYS PHE ARG THR GLY LYS SEQRES 2 B 78 THR TYR THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 B 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS LEU GLY ILE PRO SEQRES 4 B 78 PRO ASP GLN GLN TRP LEU ILE PHE ALA GLY LYS ARG LEU SEQRES 5 B 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 B 78 GLU SER THR LEU ARG GLY VAL ARG ARG LEU ARG GLY GLY SEQRES 1 C 78 GLY SER MET GLN ILE PHE VAL LYS PHE ARG THR GLY LYS SEQRES 2 C 78 THR TYR THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 C 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS LEU GLY ILE PRO SEQRES 4 C 78 PRO ASP GLN GLN TRP LEU ILE PHE ALA GLY LYS ARG LEU SEQRES 5 C 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 C 78 GLU SER THR LEU ARG GLY VAL ARG ARG LEU ARG GLY GLY SEQRES 1 D 78 GLY SER MET GLN ILE PHE VAL LYS PHE ARG THR GLY LYS SEQRES 2 D 78 THR TYR THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU SEQRES 3 D 78 ASN VAL LYS ALA LYS ILE GLN ASP LYS LEU GLY ILE PRO SEQRES 4 D 78 PRO ASP GLN GLN TRP LEU ILE PHE ALA GLY LYS ARG LEU SEQRES 5 D 78 GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS SEQRES 6 D 78 GLU SER THR LEU ARG GLY VAL ARG ARG LEU ARG GLY GLY HET SO4 A 101 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 HOH *245(H2 O) HELIX 1 1 THR A 22 GLY A 35 1 14 HELIX 2 2 PRO A 37 ASP A 39 5 3 HELIX 3 3 THR A 55 TYR A 59 5 5 HELIX 4 4 THR B 22 GLY B 35 1 14 HELIX 5 5 PRO B 37 ASP B 39 5 3 HELIX 6 6 THR B 55 ASN B 60 5 6 HELIX 7 7 THR C 22 GLY C 35 1 14 HELIX 8 8 PRO C 37 ASP C 39 5 3 HELIX 9 9 LEU C 56 ASN C 60 5 5 HELIX 10 10 THR D 22 GLY D 35 1 14 HELIX 11 11 PRO D 37 ASP D 39 5 3 HELIX 12 12 THR D 55 ASN D 60 5 6 SHEET 1 A 5 THR A 12 VAL A 17 0 SHEET 2 A 5 MET A 1 LYS A 6 -1 N ILE A 3 O LEU A 15 SHEET 3 A 5 THR A 66 ARG A 71 1 O LEU A 67 N PHE A 4 SHEET 4 A 5 GLN A 41 PHE A 45 -1 N TRP A 42 O VAL A 70 SHEET 5 A 5 LYS A 48 ARG A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 B 5 THR B 12 VAL B 17 0 SHEET 2 B 5 MET B 1 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 B 5 THR B 66 ARG B 71 1 O LEU B 67 N PHE B 4 SHEET 4 B 5 GLN B 41 PHE B 45 -1 N ILE B 44 O ARG B 68 SHEET 5 B 5 LYS B 48 ARG B 49 -1 O LYS B 48 N PHE B 45 SHEET 1 C 5 THR C 12 VAL C 17 0 SHEET 2 C 5 MET C 1 LYS C 6 -1 N MET C 1 O VAL C 17 SHEET 3 C 5 THR C 66 ARG C 71 1 O LEU C 67 N PHE C 4 SHEET 4 C 5 GLN C 41 PHE C 45 -1 N ILE C 44 O ARG C 68 SHEET 5 C 5 LYS C 48 ARG C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 D 5 THR D 12 VAL D 17 0 SHEET 2 D 5 MET D 1 PHE D 7 -1 N MET D 1 O VAL D 17 SHEET 3 D 5 THR D 66 ARG D 71 1 O LEU D 67 N PHE D 4 SHEET 4 D 5 GLN D 41 PHE D 45 -1 N ILE D 44 O ARG D 68 SHEET 5 D 5 LYS D 48 ARG D 49 -1 O LYS D 48 N PHE D 45 SITE 1 AC1 6 GLN A 62 LYS A 63 GLY B -1 ASP C 21 SITE 2 AC1 6 THR C 22 ASN C 25 CRYST1 85.782 85.782 54.457 90.00 90.00 120.00 P 31 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011657 0.006730 0.000000 0.00000 SCALE2 0.000000 0.013461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018363 0.00000 MTRIX1 1 -0.507993 0.861338 0.006303 -21.83570 1 MTRIX2 1 -0.861243 -0.507788 -0.020304 37.70260 1 MTRIX3 1 -0.014288 -0.015743 0.999774 -17.56430 1 MTRIX1 2 -0.536987 -0.843590 -0.000570 41.87060 1 MTRIX2 2 -0.843460 0.536892 0.017935 -1.71126 1 MTRIX3 2 -0.014824 0.010111 -0.999839 17.82130 1 MTRIX1 3 -0.517835 -0.855471 0.003907 21.99890 1 MTRIX2 3 -0.853849 0.517124 0.059358 36.68460 1 MTRIX3 3 -0.052800 0.027401 -0.998229 18.66330 1