HEADER HYDROLASE ACTIVATOR 16-OCT-12 4HL4 TITLE CRYSTAL STRUCTURE OF THE HUMAN TBC1D20 RABGAP DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 20; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 14-305; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBC1D20, C20ORF140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TBC, RABGAP, RAB1B, HYDROLASE ACTIVATOR, CATALYTIC DOMAIN, FLUORIDES, KEYWDS 2 GTPASE-ACTIVATING PROTEINS, RAB GTP-BINDING PROTEIN, GTP HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.M.GAZDAG,K.GAVRILJUK,A.ITZEN,C.KOETTING,K.GERWERT,R.S.GOODY REVDAT 2 20-MAR-24 4HL4 1 REMARK REVDAT 1 16-JAN-13 4HL4 0 JRNL AUTH K.GAVRILJUK,E.M.GAZDAG,A.ITZEN,C.KOTTING,R.S.GOODY,K.GERWERT JRNL TITL CATALYTIC MECHANISM OF A MAMMALIAN RAB-RABGAP COMPLEX IN JRNL TITL 2 ATOMIC DETAIL. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 21348 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23236136 JRNL DOI 10.1073/PNAS.1214431110 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 926 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1255 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.34000 REMARK 3 B22 (A**2) : 3.34000 REMARK 3 B33 (A**2) : -5.00000 REMARK 3 B12 (A**2) : 1.67000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.531 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2301 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3138 ; 1.867 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 285 ; 6.542 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;36.732 ;23.868 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 375 ;17.948 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;26.610 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 358 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1759 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1421 ; 1.142 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2294 ; 2.032 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 880 ; 3.144 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 841 ; 4.883 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 25 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -30.3498 1.5934 17.7047 REMARK 3 T TENSOR REMARK 3 T11: 0.1237 T22: 0.1859 REMARK 3 T33: 0.1920 T12: 0.1277 REMARK 3 T13: 0.0218 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.7603 L22: 2.3950 REMARK 3 L33: 3.6174 L12: 0.0964 REMARK 3 L13: -0.1423 L23: -0.5405 REMARK 3 S TENSOR REMARK 3 S11: 0.0750 S12: 0.1339 S13: 0.0046 REMARK 3 S21: -0.3063 S22: -0.1935 S23: -0.1852 REMARK 3 S31: -0.0007 S32: 0.3398 S33: 0.1185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-OCT-11; 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SLS; SLS REMARK 200 BEAMLINE : X10SA; X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793; 0.9786 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL; SI(111) CHANNEL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL; PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M; PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM ACETATE PH 4.5, 0.8M DI REMARK 280 -POTASSIUM HYDROGEN PHOSPATE, 0.8M SODIUM DIHYDROGEN PHOSPHATE, REMARK 280 0.025M BERYLLIUM FLUORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 75.33333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 75.33333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 37.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 14 REMARK 465 HIS A 15 REMARK 465 TRP A 16 REMARK 465 ASP A 17 REMARK 465 GLY A 18 REMARK 465 GLY A 19 REMARK 465 ALA A 20 REMARK 465 GLU A 21 REMARK 465 LYS A 22 REMARK 465 ALA A 23 REMARK 465 ASP A 24 REMARK 465 SER A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 26 CG OD1 ND2 REMARK 470 LYS A 28 CG CD CE NZ REMARK 470 LYS A 30 CG CD CE NZ REMARK 470 ASP A 80 CG OD1 OD2 REMARK 470 ILE A 84 CG1 CG2 CD1 REMARK 470 SER A 85 OG REMARK 470 MET A 92 CG SD CE REMARK 470 ARG A 104 CG CD NE CZ NH1 NH2 REMARK 470 SER A 106 OG REMARK 470 ARG A 108 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 160 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 188 CG1 CG2 CD1 REMARK 470 SER A 209 O REMARK 470 GLU A 211 CG CD OE1 OE2 REMARK 470 VAL A 265 CG1 CG2 REMARK 470 VAL A 275 CG1 CG2 REMARK 470 GLN A 284 CG CD OE1 NE2 REMARK 470 ASP A 285 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 105 BE BEF A 401 2.01 REMARK 500 O ASP A 179 O HOH A 506 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 61 C - N - CA ANGL. DEV. = -16.8 DEGREES REMARK 500 ARG A 66 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 237 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU A 266 CA - CB - CG ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 78 106.25 -43.72 REMARK 500 ASP A 80 106.31 -52.20 REMARK 500 PRO A 82 117.58 -38.28 REMARK 500 PRO A 83 107.66 -26.29 REMARK 500 ILE A 84 150.80 -26.44 REMARK 500 ARG A 105 27.33 -77.34 REMARK 500 HIS A 172 -89.40 -124.25 REMARK 500 LYS A 186 -161.51 -61.50 REMARK 500 HIS A 187 -135.03 46.51 REMARK 500 CYS A 270 56.13 38.08 REMARK 500 MET A 272 -33.00 -38.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HLQ RELATED DB: PDB DBREF 4HL4 A 14 305 UNP Q96BZ9 TBC20_HUMAN 14 305 SEQRES 1 A 292 GLY HIS TRP ASP GLY GLY ALA GLU LYS ALA ASP PHE ASN SEQRES 2 A 292 ALA LYS ARG LYS LYS LYS VAL ALA GLU ILE HIS GLN ALA SEQRES 3 A 292 LEU ASN SER ASP PRO THR ASP VAL ALA ALA LEU ARG ARG SEQRES 4 A 292 MET ALA ILE SER GLU GLY GLY LEU LEU THR ASP GLU ILE SEQRES 5 A 292 ARG ARG LYS VAL TRP PRO LYS LEU LEU ASN VAL ASN ALA SEQRES 6 A 292 ASN ASP PRO PRO PRO ILE SER GLY LYS ASN LEU ARG GLN SEQRES 7 A 292 MET SER LYS ASP TYR GLN GLN VAL LEU LEU ASP VAL ARG SEQRES 8 A 292 ARG SER LEU ARG ARG PHE PRO PRO GLY MET PRO GLU GLU SEQRES 9 A 292 GLN ARG GLU GLY LEU GLN GLU GLU LEU ILE ASP ILE ILE SEQRES 10 A 292 LEU LEU ILE LEU GLU ARG ASN PRO GLN LEU HIS TYR TYR SEQRES 11 A 292 GLN GLY TYR HIS ASP ILE VAL VAL THR PHE LEU LEU VAL SEQRES 12 A 292 VAL GLY GLU ARG LEU ALA THR SER LEU VAL GLU LYS LEU SEQRES 13 A 292 SER THR HIS HIS LEU ARG ASP PHE MET ASP PRO THR MET SEQRES 14 A 292 ASP ASN THR LYS HIS ILE LEU ASN TYR LEU MET PRO ILE SEQRES 15 A 292 ILE ASP GLN VAL ASN PRO GLU LEU HIS ASP PHE MET GLN SEQRES 16 A 292 SER ALA GLU VAL GLY THR ILE PHE ALA LEU SER TRP LEU SEQRES 17 A 292 ILE THR TRP PHE GLY HIS VAL LEU SER ASP PHE ARG HIS SEQRES 18 A 292 VAL VAL ARG LEU TYR ASP PHE PHE LEU ALA CYS HIS PRO SEQRES 19 A 292 LEU MET PRO ILE TYR PHE ALA ALA VAL ILE VAL LEU TYR SEQRES 20 A 292 ARG GLU GLN GLU VAL LEU ASP CYS ASP CYS ASP MET ALA SEQRES 21 A 292 SER VAL HIS HIS LEU LEU SER GLN ILE PRO GLN ASP LEU SEQRES 22 A 292 PRO TYR GLU THR LEU ILE SER ARG ALA GLY ASP LEU PHE SEQRES 23 A 292 VAL GLN PHE PRO PRO SER HET BEF A 401 4 HET ACT A 402 4 HET ACT A 403 4 HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM ACT ACETATE ION FORMUL 2 BEF BE F3 1- FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *45(H2 O) HELIX 1 1 PHE A 25 ASN A 41 1 17 HELIX 2 2 ASP A 46 SER A 56 1 11 HELIX 3 3 THR A 62 LEU A 74 1 13 HELIX 4 4 ASN A 88 SER A 93 1 6 HELIX 5 5 ASP A 95 ARG A 105 1 11 HELIX 6 6 SER A 106 PHE A 110 5 5 HELIX 7 7 PRO A 115 ASN A 137 1 23 HELIX 8 8 GLY A 145 GLY A 158 1 14 HELIX 9 9 GLY A 158 HIS A 172 1 15 HELIX 10 10 ARG A 175 ASP A 179 5 5 HELIX 11 11 LYS A 186 ASN A 190 5 5 HELIX 12 12 TYR A 191 ASN A 200 1 10 HELIX 13 13 ASN A 200 SER A 209 1 10 HELIX 14 14 THR A 214 PHE A 216 5 3 HELIX 15 15 ALA A 217 THR A 223 1 7 HELIX 16 16 ASP A 231 CYS A 245 1 15 HELIX 17 17 LEU A 248 ARG A 261 1 14 HELIX 18 18 ARG A 261 ASP A 267 1 7 HELIX 19 19 ALA A 273 GLN A 281 1 9 HELIX 20 20 PRO A 287 PHE A 302 1 16 CISPEP 1 ASP A 43 PRO A 44 0 -0.09 SITE 1 AC1 5 ASN A 75 ARG A 105 LYS A 168 HIS A 172 SITE 2 AC1 5 HOH A 520 SITE 1 AC2 2 HIS A 276 HIS A 277 SITE 1 AC3 3 PHE A 216 SER A 219 SER A 280 CRYST1 73.550 73.550 113.000 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013596 0.007850 0.000000 0.00000 SCALE2 0.000000 0.015700 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008850 0.00000