HEADER ISOMERASE 19-OCT-12 4HNH TITLE THE CRYSTAL STRUCTURE OF A SHORT-CHAIN DEHYDROGENASES/REDUCTASE (WIDE TITLE 2 TYPE) FROM VEILLONELLA PARVULA DSM 2008 IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD-DEPENDENT EPIMERASE/DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VEILLONELLA PARVULA; SOURCE 3 ORGANISM_TAXID: 479436; SOURCE 4 STRAIN: DSM 2008; SOURCE 5 GENE: VPAR_0111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,C.HATZOS-SKINTGES,S.CLANCY,A.JOACHIMIAK,MIDWEST CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (MCSG) REVDAT 3 20-SEP-23 4HNH 1 REMARK SEQADV REVDAT 2 07-NOV-12 4HNH 1 REMARK REVDAT 1 31-OCT-12 4HNH 0 JRNL AUTH K.TAN,C.HATZOS-SKINTGES,S.CLANCY,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A SHORT-CHAIN JRNL TITL 2 DEHYDROGENASES/REDUCTASE (WIDE TYPE) FROM VEILLONELLA JRNL TITL 3 PARVULA DSM 2008 IN COMPLEX WITH NADP. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 57579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2916 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0039 - 4.3435 0.96 2640 117 0.1680 0.1735 REMARK 3 2 4.3435 - 3.4494 0.99 2632 156 0.1407 0.1442 REMARK 3 3 3.4494 - 3.0139 0.99 2682 143 0.1591 0.1812 REMARK 3 4 3.0139 - 2.7386 1.00 2662 154 0.1737 0.1899 REMARK 3 5 2.7386 - 2.5424 0.99 2665 139 0.1734 0.2381 REMARK 3 6 2.5424 - 2.3926 1.00 2652 130 0.1666 0.2213 REMARK 3 7 2.3926 - 2.2728 0.99 2683 129 0.1641 0.1694 REMARK 3 8 2.2728 - 2.1739 0.99 2620 148 0.1608 0.2069 REMARK 3 9 2.1739 - 2.0902 0.99 2644 133 0.1695 0.2182 REMARK 3 10 2.0902 - 2.0181 0.99 2651 134 0.1687 0.2001 REMARK 3 11 2.0181 - 1.9550 0.99 2647 146 0.1684 0.2353 REMARK 3 12 1.9550 - 1.8992 0.99 2630 128 0.1787 0.2362 REMARK 3 13 1.8992 - 1.8492 0.98 2622 140 0.1760 0.2178 REMARK 3 14 1.8492 - 1.8041 0.98 2572 146 0.1998 0.2420 REMARK 3 15 1.8041 - 1.7631 0.98 2619 138 0.2122 0.2551 REMARK 3 16 1.7631 - 1.7255 0.98 2607 151 0.2186 0.2643 REMARK 3 17 1.7255 - 1.6910 0.98 2639 142 0.2364 0.2833 REMARK 3 18 1.6910 - 1.6591 0.98 2590 140 0.2731 0.3002 REMARK 3 19 1.6591 - 1.6295 0.97 2553 145 0.2904 0.3211 REMARK 3 20 1.6295 - 1.6019 0.95 2543 145 0.3189 0.3699 REMARK 3 21 1.6019 - 1.5760 0.80 2110 112 0.3249 0.3503 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 44.22 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.480 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.45960 REMARK 3 B22 (A**2) : -2.64070 REMARK 3 B33 (A**2) : 3.10030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 4.32110 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3790 REMARK 3 ANGLE : 1.055 5195 REMARK 3 CHIRALITY : 0.066 593 REMARK 3 PLANARITY : 0.004 657 REMARK 3 DIHEDRAL : 13.415 1454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 0:94) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8382 -5.2996 1.0813 REMARK 3 T TENSOR REMARK 3 T11: 0.1019 T22: 0.1414 REMARK 3 T33: 0.1061 T12: 0.0027 REMARK 3 T13: -0.0178 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.2775 L22: 3.5410 REMARK 3 L33: 0.8307 L12: 0.2333 REMARK 3 L13: -0.1410 L23: -0.6481 REMARK 3 S TENSOR REMARK 3 S11: 0.0164 S12: -0.1264 S13: -0.0979 REMARK 3 S21: 0.1945 S22: -0.1035 S23: -0.2988 REMARK 3 S31: 0.0241 S32: 0.1435 S33: 0.0562 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 95:218) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3031 3.2475 -10.1440 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.0982 REMARK 3 T33: 0.0770 T12: -0.0008 REMARK 3 T13: -0.0142 T23: 0.0064 REMARK 3 L TENSOR REMARK 3 L11: 2.3509 L22: 0.7468 REMARK 3 L33: 0.8436 L12: 0.5262 REMARK 3 L13: -0.2133 L23: -0.0418 REMARK 3 S TENSOR REMARK 3 S11: 0.0051 S12: 0.0199 S13: 0.0250 REMARK 3 S21: -0.0037 S22: -0.0103 S23: 0.0107 REMARK 3 S31: 0.0076 S32: -0.0414 S33: 0.0040 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 1:25) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1470 37.8650 -17.4962 REMARK 3 T TENSOR REMARK 3 T11: 0.0668 T22: 0.0827 REMARK 3 T33: 0.0702 T12: -0.0184 REMARK 3 T13: 0.0238 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 3.6569 L22: 3.8893 REMARK 3 L33: 3.0594 L12: -0.4379 REMARK 3 L13: 0.8038 L23: 0.0918 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.1122 S13: 0.1372 REMARK 3 S21: 0.1300 S22: 0.0515 S23: -0.0104 REMARK 3 S31: -0.1112 S32: -0.0481 S33: -0.0478 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 26:68) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3958 35.3933 -22.6144 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.0969 REMARK 3 T33: 0.1156 T12: -0.0239 REMARK 3 T13: 0.0048 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 2.9050 L22: 1.8383 REMARK 3 L33: 4.3760 L12: 0.5232 REMARK 3 L13: -0.3771 L23: -0.2258 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -0.0325 S13: -0.0475 REMARK 3 S21: -0.0426 S22: -0.0499 S23: -0.1316 REMARK 3 S31: -0.2521 S32: 0.2412 S33: -0.0260 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 69:94) REMARK 3 ORIGIN FOR THE GROUP (A): -0.1437 23.2651 -16.4866 REMARK 3 T TENSOR REMARK 3 T11: 0.0917 T22: 0.0839 REMARK 3 T33: 0.1390 T12: -0.0067 REMARK 3 T13: 0.0257 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.3652 L22: 3.5383 REMARK 3 L33: 4.5818 L12: 0.6834 REMARK 3 L13: 0.6999 L23: 2.2857 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: -0.1579 S13: -0.2698 REMARK 3 S21: -0.0785 S22: 0.0872 S23: -0.5559 REMARK 3 S31: 0.1051 S32: 0.1890 S33: -0.0120 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 95:113) REMARK 3 ORIGIN FOR THE GROUP (A): -11.6135 22.7676 -15.8883 REMARK 3 T TENSOR REMARK 3 T11: 0.1463 T22: 0.0936 REMARK 3 T33: 0.1712 T12: -0.0335 REMARK 3 T13: -0.0445 T23: 0.0225 REMARK 3 L TENSOR REMARK 3 L11: 4.5486 L22: 1.9336 REMARK 3 L33: 1.1957 L12: 0.3600 REMARK 3 L13: -0.1520 L23: 0.0703 REMARK 3 S TENSOR REMARK 3 S11: 0.1211 S12: -0.1513 S13: -0.7005 REMARK 3 S21: 0.1461 S22: 0.0552 S23: -0.2296 REMARK 3 S31: 0.1620 S32: -0.0861 S33: -0.1946 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 114:190) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3056 25.4417 -20.7376 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.0864 REMARK 3 T33: 0.0813 T12: -0.0215 REMARK 3 T13: -0.0129 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.7444 L22: 1.7067 REMARK 3 L33: 1.7269 L12: 0.1009 REMARK 3 L13: 0.0289 L23: -0.2711 REMARK 3 S TENSOR REMARK 3 S11: 0.0087 S12: 0.0610 S13: -0.0571 REMARK 3 S21: -0.1536 S22: 0.0383 S23: 0.2167 REMARK 3 S31: 0.0890 S32: -0.2058 S33: -0.0050 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 191:217) REMARK 3 ORIGIN FOR THE GROUP (A): -21.0320 29.0457 -15.1645 REMARK 3 T TENSOR REMARK 3 T11: 0.1170 T22: 0.1256 REMARK 3 T33: 0.1817 T12: 0.0088 REMARK 3 T13: 0.0430 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.7282 L22: 2.9743 REMARK 3 L33: 0.6583 L12: 0.4980 REMARK 3 L13: -0.9812 L23: 0.2497 REMARK 3 S TENSOR REMARK 3 S11: -0.0051 S12: 0.2131 S13: 0.1613 REMARK 3 S21: 0.1119 S22: 0.0032 S23: 0.4582 REMARK 3 S31: -0.1660 S32: 0.0170 S33: 0.0257 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075685. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97923 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57582 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 29.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY: 3R14 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M BIS REMARK 280 -TRIS:HCL, 25% (W/V) PEG3350, 10MM NADP, PH 5.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.60950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.84350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.60950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.84350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT THE BIOLOGICAL UNIT OF THIS PROTEIN REMARK 300 IS EXPERIMENTALLY UNKNOWN. IT IS PREDICTED TO BE MONOMERIC. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 HIS B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 70 OD1 ND2 REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 168 O HOH A 406 2.13 REMARK 500 O HOH B 449 O HOH B 462 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 157 104.43 -163.73 REMARK 500 THR A 210 45.74 -106.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TEA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3R14 RELATED DB: PDB REMARK 900 REDUCTIVE ETHYLATED REMARK 900 RELATED ID: 3R6D RELATED DB: PDB REMARK 900 REDUCTIVE METHYLATED REMARK 900 RELATED ID: 4HNG RELATED DB: PDB REMARK 900 WILD TYPE REMARK 900 RELATED ID: MCSG-APC100850 RELATED DB: TARGETTRACK DBREF 4HNH A 1 218 UNP D1BQI7 D1BQI7_VEIPT 1 218 DBREF 4HNH B 1 218 UNP D1BQI7 D1BQI7_VEIPT 1 218 SEQADV 4HNH SER A -2 UNP D1BQI7 EXPRESSION TAG SEQADV 4HNH ASN A -1 UNP D1BQI7 EXPRESSION TAG SEQADV 4HNH ALA A 0 UNP D1BQI7 EXPRESSION TAG SEQADV 4HNH SER B -2 UNP D1BQI7 EXPRESSION TAG SEQADV 4HNH ASN B -1 UNP D1BQI7 EXPRESSION TAG SEQADV 4HNH ALA B 0 UNP D1BQI7 EXPRESSION TAG SEQRES 1 A 221 SER ASN ALA MET TYR LYS TYR ILE THR ILE LEU GLY ALA SEQRES 2 A 221 ALA GLY GLN ILE ALA GLN LYS LEU THR ALA THR LEU LEU SEQRES 3 A 221 THR TYR THR ASP MET HIS ILE THR LEU TYR GLY ARG GLN SEQRES 4 A 221 LEU LYS THR ARG ILE PRO PRO GLU ILE ILE ASP HIS GLU SEQRES 5 A 221 ARG VAL THR VAL ILE GLU GLY SER PHE GLN ASN PRO GLY SEQRES 6 A 221 LYS LEU GLU GLN ALA VAL THR ASN ALA GLU VAL VAL PHE SEQRES 7 A 221 VAL GLY ALA MET GLU SER GLY SER ASP MET ALA SER ILE SEQRES 8 A 221 VAL LYS ALA LEU SER ARG LYS ASN ILE ARG ARG VAL ILE SEQRES 9 A 221 GLY VAL SER MET ALA GLY LEU SER GLY GLU PHE PRO VAL SEQRES 10 A 221 ALA LEU GLU LYS TRP THR PHE ASP ASN LEU PRO ILE SER SEQRES 11 A 221 TYR VAL GLN GLY GLU ARG GLN ALA ARG ASN VAL LEU ARG SEQRES 12 A 221 GLU SER ASN LEU ASN TYR THR ILE LEU ARG LEU THR TRP SEQRES 13 A 221 LEU TYR ASN ASP PRO GLU LYS THR ASP TYR GLU LEU ILE SEQRES 14 A 221 PRO GLU GLY ALA GLN PHE ASN ASP ALA GLN VAL SER ARG SEQRES 15 A 221 GLU ALA VAL VAL LYS ALA ILE PHE ASP ILE LEU HIS ALA SEQRES 16 A 221 ALA ASP GLU THR PRO PHE HIS ARG THR SER ILE GLY VAL SEQRES 17 A 221 GLY GLU PRO GLY THR HIS TYR ASP LYS PRO SER PHE HIS SEQRES 1 B 221 SER ASN ALA MET TYR LYS TYR ILE THR ILE LEU GLY ALA SEQRES 2 B 221 ALA GLY GLN ILE ALA GLN LYS LEU THR ALA THR LEU LEU SEQRES 3 B 221 THR TYR THR ASP MET HIS ILE THR LEU TYR GLY ARG GLN SEQRES 4 B 221 LEU LYS THR ARG ILE PRO PRO GLU ILE ILE ASP HIS GLU SEQRES 5 B 221 ARG VAL THR VAL ILE GLU GLY SER PHE GLN ASN PRO GLY SEQRES 6 B 221 LYS LEU GLU GLN ALA VAL THR ASN ALA GLU VAL VAL PHE SEQRES 7 B 221 VAL GLY ALA MET GLU SER GLY SER ASP MET ALA SER ILE SEQRES 8 B 221 VAL LYS ALA LEU SER ARG LYS ASN ILE ARG ARG VAL ILE SEQRES 9 B 221 GLY VAL SER MET ALA GLY LEU SER GLY GLU PHE PRO VAL SEQRES 10 B 221 ALA LEU GLU LYS TRP THR PHE ASP ASN LEU PRO ILE SER SEQRES 11 B 221 TYR VAL GLN GLY GLU ARG GLN ALA ARG ASN VAL LEU ARG SEQRES 12 B 221 GLU SER ASN LEU ASN TYR THR ILE LEU ARG LEU THR TRP SEQRES 13 B 221 LEU TYR ASN ASP PRO GLU LYS THR ASP TYR GLU LEU ILE SEQRES 14 B 221 PRO GLU GLY ALA GLN PHE ASN ASP ALA GLN VAL SER ARG SEQRES 15 B 221 GLU ALA VAL VAL LYS ALA ILE PHE ASP ILE LEU HIS ALA SEQRES 16 B 221 ALA ASP GLU THR PRO PHE HIS ARG THR SER ILE GLY VAL SEQRES 17 B 221 GLY GLU PRO GLY THR HIS TYR ASP LYS PRO SER PHE HIS HET NAP A 301 48 HET CL A 302 1 HET GOL A 303 6 HET GOL A 304 6 HET GOL A 305 6 HET FMT A 306 3 HET FMT A 307 3 HET TEA B 301 7 HET NAP B 302 48 HET CL B 303 1 HET FMT B 304 3 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETNAM FMT FORMIC ACID HETNAM TEA TRIETHYLAMMONIUM ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 CL 2(CL 1-) FORMUL 5 GOL 3(C3 H8 O3) FORMUL 8 FMT 3(C H2 O2) FORMUL 10 TEA C6 H16 N 1+ FORMUL 14 HOH *444(H2 O) HELIX 1 1 GLY A 12 THR A 26 1 15 HELIX 2 2 GLN A 36 ARG A 40 5 5 HELIX 3 3 PRO A 42 ASP A 47 1 6 HELIX 4 4 ASN A 60 THR A 69 1 10 HELIX 5 5 SER A 81 LYS A 95 1 15 HELIX 6 6 PRO A 113 ASN A 123 1 11 HELIX 7 7 PRO A 125 SER A 142 1 18 HELIX 8 8 ARG A 179 HIS A 191 1 13 HELIX 9 9 GLU A 195 HIS A 199 5 5 HELIX 10 10 GLY B 12 THR B 26 1 15 HELIX 11 11 GLN B 36 ILE B 41 1 6 HELIX 12 12 PRO B 42 ASP B 47 1 6 HELIX 13 13 ASN B 60 THR B 69 1 10 HELIX 14 14 SER B 81 LYS B 95 1 15 HELIX 15 15 PRO B 113 ASN B 123 1 11 HELIX 16 16 PRO B 125 GLU B 141 1 17 HELIX 17 17 ARG B 179 HIS B 191 1 13 HELIX 18 18 GLU B 195 HIS B 199 5 5 SHEET 1 A 8 VAL A 51 GLU A 55 0 SHEET 2 A 8 HIS A 29 GLY A 34 1 N LEU A 32 O THR A 52 SHEET 3 A 8 TYR A 4 LEU A 8 1 N ILE A 7 O THR A 31 SHEET 4 A 8 VAL A 73 VAL A 76 1 O PHE A 75 N LEU A 8 SHEET 5 A 8 ARG A 99 MET A 105 1 O ILE A 101 N VAL A 76 SHEET 6 A 8 ASN A 145 LEU A 151 1 O LEU A 151 N SER A 104 SHEET 7 A 8 THR A 201 GLY A 206 1 O ILE A 203 N ARG A 150 SHEET 8 A 8 GLU A 164 ILE A 166 -1 N ILE A 166 O GLY A 204 SHEET 1 B 2 LEU A 154 TYR A 155 0 SHEET 2 B 2 VAL A 177 SER A 178 1 O VAL A 177 N TYR A 155 SHEET 1 C 8 VAL B 51 GLU B 55 0 SHEET 2 C 8 HIS B 29 GLY B 34 1 N LEU B 32 O THR B 52 SHEET 3 C 8 TYR B 4 LEU B 8 1 N ILE B 7 O THR B 31 SHEET 4 C 8 VAL B 73 VAL B 76 1 O PHE B 75 N LEU B 8 SHEET 5 C 8 ARG B 99 MET B 105 1 O ILE B 101 N VAL B 76 SHEET 6 C 8 ASN B 145 LEU B 151 1 O LEU B 149 N SER B 104 SHEET 7 C 8 THR B 201 GLY B 206 1 O THR B 201 N ILE B 148 SHEET 8 C 8 GLU B 164 ILE B 166 -1 N ILE B 166 O GLY B 204 SHEET 1 D 2 TRP B 153 TYR B 155 0 SHEET 2 D 2 GLN B 176 SER B 178 1 O VAL B 177 N TRP B 153 SITE 1 AC1 32 ALA A 11 GLY A 12 GLN A 13 ILE A 14 SITE 2 AC1 32 ARG A 35 ARG A 40 SER A 57 PHE A 58 SITE 3 AC1 32 GLY A 77 ALA A 78 GLU A 80 ASP A 84 SITE 4 AC1 32 TYR A 128 LEU A 151 THR A 152 TRP A 153 SITE 5 AC1 32 LEU A 154 ARG A 179 GOL A 303 GOL A 305 SITE 6 AC1 32 HOH A 420 HOH A 422 HOH A 432 HOH A 433 SITE 7 AC1 32 HOH A 464 HOH A 468 HOH A 492 HOH A 516 SITE 8 AC1 32 HOH A 556 HOH A 563 HOH A 592 HOH A 594 SITE 1 AC2 2 GLU A 55 LYS A 63 SITE 1 AC3 8 MET A 105 ALA A 106 PHE A 112 LEU A 151 SITE 2 AC3 8 THR A 152 TRP A 153 NAP A 301 GOL A 305 SITE 1 AC4 6 GLU A 164 GLN A 171 ASN A 173 ASP A 174 SITE 2 AC4 6 HIS A 211 HOH A 520 SITE 1 AC5 4 PRO A 125 TYR A 128 NAP A 301 GOL A 303 SITE 1 AC6 8 SER A 104 MET A 105 LEU A 108 ARG A 136 SITE 2 AC6 8 ARG A 150 HOH A 452 HOH A 479 HOH A 515 SITE 1 AC7 10 THR A 39 HOH A 487 GLU B 164 ILE B 166 SITE 2 AC7 10 GLN B 171 PHE B 172 ASN B 173 ASP B 174 SITE 3 AC7 10 HIS B 211 HOH B 542 SITE 1 AC8 38 ALA A 193 HOH A 416 HOH A 605 ALA B 11 SITE 2 AC8 38 GLY B 12 GLN B 13 ILE B 14 ARG B 35 SITE 3 AC8 38 ARG B 40 SER B 57 PHE B 58 GLN B 59 SITE 4 AC8 38 GLY B 77 ALA B 78 GLU B 80 ASP B 84 SITE 5 AC8 38 SER B 104 MET B 105 TYR B 128 LEU B 151 SITE 6 AC8 38 THR B 152 TRP B 153 LEU B 154 ARG B 179 SITE 7 AC8 38 HOH B 403 HOH B 411 HOH B 418 HOH B 419 SITE 8 AC8 38 HOH B 424 HOH B 427 HOH B 448 HOH B 459 SITE 9 AC8 38 HOH B 493 HOH B 504 HOH B 509 HOH B 591 SITE 10 AC8 38 HOH B 594 HOH B 611 SITE 1 AC9 5 ARG B 136 ARG B 140 SER B 202 HOH B 506 SITE 2 AC9 5 HOH B 613 SITE 1 BC1 1 HOH B 414 CRYST1 109.219 71.687 65.016 90.00 121.44 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009156 0.000000 0.005597 0.00000 SCALE2 0.000000 0.013950 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018027 0.00000