HEADER TRANSFERASE 22-OCT-12 4HO6 TITLE CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM TITLE 2 ANEURINIBACILLUS THERMOAEROPHILUS COMPLEXED WITH UDP-GLUCOSE AND UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.7.24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANEURINIBACILLUS THERMOAEROPHILUS; SOURCE 3 ORGANISM_TAXID: 143495; SOURCE 4 GENE: RMLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS THYMIDYLYLTRANSFERASE, NUCLEOTIDE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.CHEN,W.T.CHIEN,C.C.LIN,W.C.WANG REVDAT 3 20-SEP-23 4HO6 1 REMARK SEQADV REVDAT 2 15-NOV-17 4HO6 1 REMARK REVDAT 1 23-OCT-13 4HO6 0 JRNL AUTH T.J.CHEN,W.T.CHIEN,C.C.LIN,W.C.WANG JRNL TITL CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE JRNL TITL 2 THYMIDYLYLTRANSFERASE FROM ANEURINIBACILLUS THERMOAEROPHILUS JRNL TITL 3 COMPLEXED WITH UDP-GLUCOSE AND UTP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.92 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22470 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1148 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.92 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1518 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.77 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 93 REMARK 3 BIN FREE R VALUE : 0.2290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2256 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 75 REMARK 3 SOLVENT ATOMS : 176 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.38000 REMARK 3 B22 (A**2) : 0.38000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.167 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.272 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; 0.020 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; 1.462 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; 6.746 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ;35.797 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ;16.743 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ;19.224 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; 0.122 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HO6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075710. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22509 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.920 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.400 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.60 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 2.7M AMMONIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 45.77050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 45.77050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.79200 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 45.77050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 45.77050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.79200 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 45.77050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.77050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.79200 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 45.77050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.77050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 33.79200 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -227.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -67.58400 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -67.58400 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 404 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 573 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 289 REMARK 465 LYS A 290 REMARK 465 ASP A 291 REMARK 465 LEU A 292 REMARK 465 VAL A 293 REMARK 465 THR A 294 REMARK 465 VAL A 295 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 SO4 A 303 O HOH A 563 1.94 REMARK 500 O LEU A 222 O HOH A 572 1.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 192 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 192 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 -81.39 70.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UPG A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HO0 RELATED DB: PDB REMARK 900 RELATED ID: 4HO2 RELATED DB: PDB REMARK 900 RELATED ID: 4HO3 RELATED DB: PDB REMARK 900 RELATED ID: 4HO4 RELATED DB: PDB REMARK 900 RELATED ID: 4HO5 RELATED DB: PDB REMARK 900 RELATED ID: 4HO8 RELATED DB: PDB REMARK 900 RELATED ID: 4HO9 RELATED DB: PDB REMARK 900 RELATED ID: 4HOC RELATED DB: PDB DBREF 4HO6 A 1 296 UNP Q9AGY4 Q9AGY4_ANETH 1 296 SEQADV 4HO6 GLY A 297 UNP Q9AGY4 EXPRESSION TAG SEQRES 1 A 297 MET LYS GLY ILE ILE LEU SER GLY GLY SER GLY THR ARG SEQRES 2 A 297 LEU TYR PRO LEU THR LYS VAL VAL SER LYS GLN LEU LEU SEQRES 3 A 297 PRO VAL TYR ASP LYS PRO MET VAL TYR TYR PRO LEU SER SEQRES 4 A 297 VAL LEU MET LEU ALA GLY ILE LYS ASP ILE LEU ILE ILE SEQRES 5 A 297 SER THR PRO GLU ASP THR PRO ARG PHE GLU GLN LEU LEU SEQRES 6 A 297 GLY GLY GLY SER GLU LEU GLY ILE SER LEU SER TYR ALA SEQRES 7 A 297 VAL GLN SER SER PRO ASP GLY LEU ALA GLN ALA PHE ILE SEQRES 8 A 297 ILE GLY GLU GLU PHE ILE GLY ASP ASP ASN VAL ALA LEU SEQRES 9 A 297 VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS GLY PHE THR SEQRES 10 A 297 GLU LEU LEU GLN ARG ALA ALA ASN ARG LYS SER GLY ALA SEQRES 11 A 297 THR ILE PHE GLY TYR ASN VAL LYS ASP PRO GLN ARG PHE SEQRES 12 A 297 GLY VAL VAL GLU PHE ASP GLU LYS GLY LYS VAL ILE SER SEQRES 13 A 297 ILE GLU GLU LYS PRO GLU GLU PRO LYS SER SER TYR ALA SEQRES 14 A 297 VAL THR GLY LEU TYR PHE TYR ASP ASN ARG VAL VAL ASP SEQRES 15 A 297 ILE ALA LYS ASN ILE THR PRO SER ALA ARG GLY GLU LEU SEQRES 16 A 297 GLU ILE THR ASP VAL ASN LYS ALA TYR LEU GLU LEU GLY SEQRES 17 A 297 GLU LEU HIS VAL GLU LEU LEU GLY ARG GLY PHE ALA TRP SEQRES 18 A 297 LEU ASP THR GLY THR HIS GLU SER LEU LEU GLN ALA SER SEQRES 19 A 297 GLN PHE ILE GLU THR ILE GLU LYS ARG GLN SER LEU LYS SEQRES 20 A 297 VAL ALA CYS LEU GLU GLU ILE ALA TYR ARG MET GLY TYR SEQRES 21 A 297 ILE SER ARG GLU GLN LEU ILE LYS LEU ALA GLU PRO LEU SEQRES 22 A 297 MET LYS ASN GLU TYR GLY GLN TYR LEU MET ASN LEU ALA SEQRES 23 A 297 HIS ARG SER LYS ASP LEU VAL THR VAL GLU GLY HET UPG A 300 36 HET UTP A 301 29 HET SO4 A 302 5 HET SO4 A 303 5 HETNAM UPG URIDINE-5'-DIPHOSPHATE-GLUCOSE HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN UPG URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE HETSYN 2 UPG ESTER FORMUL 2 UPG C15 H24 N2 O17 P2 FORMUL 3 UTP C9 H15 N2 O15 P3 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *176(H2 O) HELIX 1 1 GLY A 11 TYR A 15 5 5 HELIX 2 2 SER A 22 LEU A 25 5 4 HELIX 3 3 VAL A 34 ALA A 44 1 11 HELIX 4 4 ASP A 57 GLY A 66 1 10 HELIX 5 5 GLY A 68 GLY A 72 5 5 HELIX 6 6 ALA A 87 GLY A 93 1 7 HELIX 7 7 GLY A 93 GLY A 98 1 6 HELIX 8 8 GLY A 115 ARG A 126 1 12 HELIX 9 9 ASP A 139 ARG A 142 5 4 HELIX 10 10 ARG A 179 ILE A 187 1 9 HELIX 11 11 GLU A 196 LEU A 207 1 12 HELIX 12 12 THR A 226 SER A 245 1 20 HELIX 13 13 CYS A 250 MET A 258 1 9 HELIX 14 14 SER A 262 GLU A 271 1 10 HELIX 15 15 PRO A 272 MET A 274 5 3 HELIX 16 16 ASN A 276 ARG A 288 1 13 SHEET 1 A 7 SER A 74 VAL A 79 0 SHEET 2 A 7 ASP A 48 SER A 53 1 N ILE A 49 O SER A 74 SHEET 3 A 7 LYS A 2 LEU A 6 1 N ILE A 5 O LEU A 50 SHEET 4 A 7 VAL A 102 LEU A 106 1 O VAL A 105 N ILE A 4 SHEET 5 A 7 TYR A 168 TYR A 176 -1 O TYR A 174 N LEU A 104 SHEET 6 A 7 GLY A 144 PHE A 148 -1 N GLY A 144 O VAL A 170 SHEET 7 A 7 VAL A 154 GLU A 159 -1 O ILE A 155 N GLU A 147 SHEET 1 B 7 SER A 74 VAL A 79 0 SHEET 2 B 7 ASP A 48 SER A 53 1 N ILE A 49 O SER A 74 SHEET 3 B 7 LYS A 2 LEU A 6 1 N ILE A 5 O LEU A 50 SHEET 4 B 7 VAL A 102 LEU A 106 1 O VAL A 105 N ILE A 4 SHEET 5 B 7 TYR A 168 TYR A 176 -1 O TYR A 174 N LEU A 104 SHEET 6 B 7 ALA A 130 ASN A 136 -1 N TYR A 135 O ALA A 169 SHEET 7 B 7 LEU A 210 LEU A 215 1 O LEU A 215 N GLY A 134 SHEET 1 C 2 PRO A 27 VAL A 28 0 SHEET 2 C 2 LYS A 31 PRO A 32 -1 O LYS A 31 N VAL A 28 SHEET 1 D 2 ILE A 110 TYR A 112 0 SHEET 2 D 2 ALA A 220 LEU A 222 -1 O ALA A 220 N TYR A 112 CISPEP 1 TYR A 15 PRO A 16 0 7.27 SITE 1 AC1 21 LEU A 6 GLY A 8 GLY A 9 GLN A 80 SITE 2 AC1 21 PRO A 83 ASP A 84 GLY A 85 LEU A 106 SITE 3 AC1 21 ASP A 108 PHE A 143 GLY A 144 GLU A 159 SITE 4 AC1 21 LYS A 160 VAL A 170 ARG A 192 HOH A 402 SITE 5 AC1 21 HOH A 403 HOH A 408 HOH A 411 HOH A 413 SITE 6 AC1 21 HOH A 526 SITE 1 AC2 24 LEU A 43 TYR A 112 GLY A 113 HIS A 114 SITE 2 AC2 24 GLY A 115 PHE A 116 THR A 117 GLY A 216 SITE 3 AC2 24 ARG A 217 GLY A 218 VAL A 248 ALA A 249 SITE 4 AC2 24 GLU A 253 ILE A 254 ARG A 257 HOH A 406 SITE 5 AC2 24 HOH A 418 HOH A 427 HOH A 432 HOH A 466 SITE 6 AC2 24 HOH A 472 HOH A 516 HOH A 549 HOH A 576 SITE 1 AC3 3 GLY A 11 THR A 12 ARG A 13 SITE 1 AC4 9 GLY A 66 GLY A 67 SER A 69 TYR A 77 SITE 2 AC4 9 ALA A 78 VAL A 79 HOH A 473 HOH A 512 SITE 3 AC4 9 HOH A 563 CRYST1 91.541 91.541 67.584 90.00 90.00 90.00 P 42 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010924 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010924 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014796 0.00000