HEADER TRANSFERASE 22-OCT-12 4HO9 TITLE CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE THYMIDYLYLTRANSFERASE FROM TITLE 2 ANEURINIBACILLUS THERMOAEROPHILUS COMPLEXED WITH UDP-GALACTOSE AND TITLE 3 UTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.7.24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANEURINIBACILLUS THERMOAEROPHILUS; SOURCE 3 ORGANISM_TAXID: 143495; SOURCE 4 GENE: RMLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS THYMIDYLYLTRANSFERASE, NUCLEOTIDE BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.CHEN,W.T.CHIEN,C.C.LIN,W.C.WANG REVDAT 3 20-SEP-23 4HO9 1 REMARK SEQADV REVDAT 2 15-NOV-17 4HO9 1 REMARK REVDAT 1 23-OCT-13 4HO9 0 JRNL AUTH T.J.CHEN,W.T.CHIEN,C.C.LIN,W.C.WANG JRNL TITL CRYSTAL STRUCTURE OF GLUCOSE 1-PHOSPHATE JRNL TITL 2 THYMIDYLYLTRANSFERASE FROM ANEURINIBACILLUS THERMOAEROPHILUS JRNL TITL 3 COMPLEXED WITH UDP-GALACTOSE AND UTP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 67775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3441 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4761 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.2170 REMARK 3 BIN FREE R VALUE SET COUNT : 246 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4557 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 175 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.97000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -1.52000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.109 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.102 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4815 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6539 ; 1.455 ; 2.030 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 7.052 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;32.123 ;24.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 832 ;16.008 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.236 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 731 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3502 ; 0.015 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2878 ; 1.645 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4630 ; 2.708 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1937 ; 4.287 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1909 ; 6.805 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HO9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67790 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.04200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.21400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1H5R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 2.0M LITHIUM REMARK 280 SULFATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.39400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.38150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.39400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.38150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -307.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 64.23373 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.66524 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 295 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 SER B 289 REMARK 465 LYS B 290 REMARK 465 ASP B 291 REMARK 465 LEU B 292 REMARK 465 VAL B 293 REMARK 465 THR B 294 REMARK 465 VAL B 295 REMARK 465 GLU B 296 REMARK 465 GLY B 297 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA A 191 O4 SO4 A 306 1.98 REMARK 500 OG SER B 22 O HOH B 660 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLN B 235 OE1 GLN B 235 2656 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 29 -85.22 62.06 REMARK 500 THR A 224 48.96 -109.74 REMARK 500 TYR B 29 -84.21 62.56 REMARK 500 ASP B 149 153.11 -44.35 REMARK 500 GLU B 150 -37.47 -34.99 REMARK 500 THR B 224 53.78 -118.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 149 GLU B 150 145.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDU B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UTP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HO0 RELATED DB: PDB REMARK 900 RELATED ID: 4HO2 RELATED DB: PDB REMARK 900 RELATED ID: 4HO3 RELATED DB: PDB REMARK 900 RELATED ID: 4HO4 RELATED DB: PDB REMARK 900 RELATED ID: 4HO5 RELATED DB: PDB REMARK 900 RELATED ID: 4HO6 RELATED DB: PDB REMARK 900 RELATED ID: 4HO8 RELATED DB: PDB REMARK 900 RELATED ID: 4HOC RELATED DB: PDB DBREF 4HO9 A 1 296 UNP Q9AGY4 Q9AGY4_ANETH 1 296 DBREF 4HO9 B 1 296 UNP Q9AGY4 Q9AGY4_ANETH 1 296 SEQADV 4HO9 GLY A 297 UNP Q9AGY4 EXPRESSION TAG SEQADV 4HO9 GLY B 297 UNP Q9AGY4 EXPRESSION TAG SEQRES 1 A 297 MET LYS GLY ILE ILE LEU SER GLY GLY SER GLY THR ARG SEQRES 2 A 297 LEU TYR PRO LEU THR LYS VAL VAL SER LYS GLN LEU LEU SEQRES 3 A 297 PRO VAL TYR ASP LYS PRO MET VAL TYR TYR PRO LEU SER SEQRES 4 A 297 VAL LEU MET LEU ALA GLY ILE LYS ASP ILE LEU ILE ILE SEQRES 5 A 297 SER THR PRO GLU ASP THR PRO ARG PHE GLU GLN LEU LEU SEQRES 6 A 297 GLY GLY GLY SER GLU LEU GLY ILE SER LEU SER TYR ALA SEQRES 7 A 297 VAL GLN SER SER PRO ASP GLY LEU ALA GLN ALA PHE ILE SEQRES 8 A 297 ILE GLY GLU GLU PHE ILE GLY ASP ASP ASN VAL ALA LEU SEQRES 9 A 297 VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS GLY PHE THR SEQRES 10 A 297 GLU LEU LEU GLN ARG ALA ALA ASN ARG LYS SER GLY ALA SEQRES 11 A 297 THR ILE PHE GLY TYR ASN VAL LYS ASP PRO GLN ARG PHE SEQRES 12 A 297 GLY VAL VAL GLU PHE ASP GLU LYS GLY LYS VAL ILE SER SEQRES 13 A 297 ILE GLU GLU LYS PRO GLU GLU PRO LYS SER SER TYR ALA SEQRES 14 A 297 VAL THR GLY LEU TYR PHE TYR ASP ASN ARG VAL VAL ASP SEQRES 15 A 297 ILE ALA LYS ASN ILE THR PRO SER ALA ARG GLY GLU LEU SEQRES 16 A 297 GLU ILE THR ASP VAL ASN LYS ALA TYR LEU GLU LEU GLY SEQRES 17 A 297 GLU LEU HIS VAL GLU LEU LEU GLY ARG GLY PHE ALA TRP SEQRES 18 A 297 LEU ASP THR GLY THR HIS GLU SER LEU LEU GLN ALA SER SEQRES 19 A 297 GLN PHE ILE GLU THR ILE GLU LYS ARG GLN SER LEU LYS SEQRES 20 A 297 VAL ALA CYS LEU GLU GLU ILE ALA TYR ARG MET GLY TYR SEQRES 21 A 297 ILE SER ARG GLU GLN LEU ILE LYS LEU ALA GLU PRO LEU SEQRES 22 A 297 MET LYS ASN GLU TYR GLY GLN TYR LEU MET ASN LEU ALA SEQRES 23 A 297 HIS ARG SER LYS ASP LEU VAL THR VAL GLU GLY SEQRES 1 B 297 MET LYS GLY ILE ILE LEU SER GLY GLY SER GLY THR ARG SEQRES 2 B 297 LEU TYR PRO LEU THR LYS VAL VAL SER LYS GLN LEU LEU SEQRES 3 B 297 PRO VAL TYR ASP LYS PRO MET VAL TYR TYR PRO LEU SER SEQRES 4 B 297 VAL LEU MET LEU ALA GLY ILE LYS ASP ILE LEU ILE ILE SEQRES 5 B 297 SER THR PRO GLU ASP THR PRO ARG PHE GLU GLN LEU LEU SEQRES 6 B 297 GLY GLY GLY SER GLU LEU GLY ILE SER LEU SER TYR ALA SEQRES 7 B 297 VAL GLN SER SER PRO ASP GLY LEU ALA GLN ALA PHE ILE SEQRES 8 B 297 ILE GLY GLU GLU PHE ILE GLY ASP ASP ASN VAL ALA LEU SEQRES 9 B 297 VAL LEU GLY ASP ASN ILE PHE TYR GLY HIS GLY PHE THR SEQRES 10 B 297 GLU LEU LEU GLN ARG ALA ALA ASN ARG LYS SER GLY ALA SEQRES 11 B 297 THR ILE PHE GLY TYR ASN VAL LYS ASP PRO GLN ARG PHE SEQRES 12 B 297 GLY VAL VAL GLU PHE ASP GLU LYS GLY LYS VAL ILE SER SEQRES 13 B 297 ILE GLU GLU LYS PRO GLU GLU PRO LYS SER SER TYR ALA SEQRES 14 B 297 VAL THR GLY LEU TYR PHE TYR ASP ASN ARG VAL VAL ASP SEQRES 15 B 297 ILE ALA LYS ASN ILE THR PRO SER ALA ARG GLY GLU LEU SEQRES 16 B 297 GLU ILE THR ASP VAL ASN LYS ALA TYR LEU GLU LEU GLY SEQRES 17 B 297 GLU LEU HIS VAL GLU LEU LEU GLY ARG GLY PHE ALA TRP SEQRES 18 B 297 LEU ASP THR GLY THR HIS GLU SER LEU LEU GLN ALA SER SEQRES 19 B 297 GLN PHE ILE GLU THR ILE GLU LYS ARG GLN SER LEU LYS SEQRES 20 B 297 VAL ALA CYS LEU GLU GLU ILE ALA TYR ARG MET GLY TYR SEQRES 21 B 297 ILE SER ARG GLU GLN LEU ILE LYS LEU ALA GLU PRO LEU SEQRES 22 B 297 MET LYS ASN GLU TYR GLY GLN TYR LEU MET ASN LEU ALA SEQRES 23 B 297 HIS ARG SER LYS ASP LEU VAL THR VAL GLU GLY HET GDU A 300 36 HET UTP A 301 29 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET GDU B 300 36 HET UTP B 301 29 HET SO4 B 302 5 HET SO4 B 303 5 HET SO4 B 304 5 HET SO4 B 305 5 HETNAM GDU GALACTOSE-URIDINE-5'-DIPHOSPHATE HETNAM UTP URIDINE 5'-TRIPHOSPHATE HETNAM SO4 SULFATE ION HETSYN GDU UDP-D-GALACTOPYRANOSE FORMUL 3 GDU 2(C15 H24 N2 O17 P2) FORMUL 4 UTP 2(C9 H15 N2 O15 P3) FORMUL 5 SO4 9(O4 S 2-) FORMUL 16 HOH *521(H2 O) HELIX 1 1 GLY A 11 TYR A 15 5 5 HELIX 2 2 SER A 22 LEU A 25 5 4 HELIX 3 3 VAL A 34 ALA A 44 1 11 HELIX 4 4 ASP A 57 GLY A 66 1 10 HELIX 5 5 GLY A 68 GLY A 72 5 5 HELIX 6 6 ALA A 87 GLY A 93 1 7 HELIX 7 7 GLY A 93 GLY A 98 1 6 HELIX 8 8 GLY A 115 ARG A 126 1 12 HELIX 9 9 ASP A 139 ARG A 142 5 4 HELIX 10 10 ARG A 179 ILE A 187 1 9 HELIX 11 11 GLU A 196 LEU A 207 1 12 HELIX 12 12 THR A 226 GLN A 244 1 19 HELIX 13 13 CYS A 250 MET A 258 1 9 HELIX 14 14 SER A 262 GLU A 271 1 10 HELIX 15 15 PRO A 272 MET A 274 5 3 HELIX 16 16 ASN A 276 HIS A 287 1 12 HELIX 17 17 SER A 289 THR A 294 1 6 HELIX 18 18 PRO B 16 VAL B 20 5 5 HELIX 19 19 SER B 22 LEU B 25 5 4 HELIX 20 20 VAL B 34 ALA B 44 1 11 HELIX 21 21 ASP B 57 GLY B 66 1 10 HELIX 22 22 GLY B 68 GLY B 72 5 5 HELIX 23 23 GLY B 85 ALA B 87 5 3 HELIX 24 24 GLN B 88 GLY B 93 1 6 HELIX 25 25 GLY B 93 GLY B 98 1 6 HELIX 26 26 GLY B 115 ARG B 126 1 12 HELIX 27 27 ASP B 139 ARG B 142 5 4 HELIX 28 28 ARG B 179 ILE B 187 1 9 HELIX 29 29 GLU B 196 LEU B 207 1 12 HELIX 30 30 THR B 226 GLN B 244 1 19 HELIX 31 31 CYS B 250 MET B 258 1 9 HELIX 32 32 SER B 262 GLU B 271 1 10 HELIX 33 33 PRO B 272 MET B 274 5 3 HELIX 34 34 ASN B 276 HIS B 287 1 12 SHEET 1 A 7 SER A 74 VAL A 79 0 SHEET 2 A 7 ASP A 48 SER A 53 1 N ILE A 51 O SER A 76 SHEET 3 A 7 LYS A 2 LEU A 6 1 N ILE A 5 O LEU A 50 SHEET 4 A 7 VAL A 102 LEU A 106 1 O VAL A 105 N ILE A 4 SHEET 5 A 7 TYR A 168 TYR A 176 -1 O TYR A 176 N VAL A 102 SHEET 6 A 7 ALA A 130 ASN A 136 -1 N THR A 131 O PHE A 175 SHEET 7 A 7 LEU A 210 LEU A 215 1 O LEU A 215 N GLY A 134 SHEET 1 B 2 PRO A 27 VAL A 28 0 SHEET 2 B 2 LYS A 31 PRO A 32 -1 O LYS A 31 N VAL A 28 SHEET 1 C 2 ASN A 109 TYR A 112 0 SHEET 2 C 2 ALA A 220 ASP A 223 -1 O ALA A 220 N TYR A 112 SHEET 1 D 2 GLY A 144 PHE A 148 0 SHEET 2 D 2 VAL A 154 GLU A 159 -1 O ILE A 155 N GLU A 147 SHEET 1 E 7 SER B 74 VAL B 79 0 SHEET 2 E 7 ASP B 48 SER B 53 1 N ILE B 51 O SER B 76 SHEET 3 E 7 LYS B 2 LEU B 6 1 N GLY B 3 O LEU B 50 SHEET 4 E 7 VAL B 102 LEU B 106 1 O ALA B 103 N ILE B 4 SHEET 5 E 7 ALA B 169 TYR B 176 -1 O TYR B 174 N LEU B 104 SHEET 6 E 7 ALA B 130 TYR B 135 -1 N PHE B 133 O THR B 171 SHEET 7 E 7 LEU B 210 LEU B 215 1 O LEU B 215 N GLY B 134 SHEET 1 F 2 PRO B 27 VAL B 28 0 SHEET 2 F 2 LYS B 31 PRO B 32 -1 O LYS B 31 N VAL B 28 SHEET 1 G 2 ASN B 109 TYR B 112 0 SHEET 2 G 2 ALA B 220 ASP B 223 -1 O LEU B 222 N ILE B 110 SHEET 1 H 2 GLY B 144 PHE B 148 0 SHEET 2 H 2 VAL B 154 GLU B 159 -1 O ILE B 155 N GLU B 147 CISPEP 1 TYR A 15 PRO A 16 0 5.96 CISPEP 2 TYR B 15 PRO B 16 0 10.40 SITE 1 AC1 27 LEU A 6 GLY A 8 GLY A 9 GLN A 80 SITE 2 AC1 27 PRO A 83 ASP A 84 GLY A 85 LEU A 106 SITE 3 AC1 27 ASP A 108 ASN A 109 GLY A 144 GLU A 159 SITE 4 AC1 27 LYS A 160 VAL A 170 THR A 171 TYR A 174 SITE 5 AC1 27 ARG A 192 TRP A 221 HOH A 405 HOH A 412 SITE 6 AC1 27 HOH A 445 HOH A 446 HOH A 500 HOH A 578 SITE 7 AC1 27 HOH A 607 HOH A 611 HOH A 644 SITE 1 AC2 19 LEU A 43 TYR A 112 GLY A 113 HIS A 114 SITE 2 AC2 19 GLY A 115 PHE A 116 THR A 117 GLU A 118 SITE 3 AC2 19 VAL A 248 ALA A 249 ILE A 254 ARG A 257 SITE 4 AC2 19 HOH A 402 HOH A 424 HOH A 586 GLY B 216 SITE 5 AC2 19 ARG B 217 GLY B 218 HOH B 529 SITE 1 AC3 7 GLY A 11 THR A 12 ARG A 13 HOH A 500 SITE 2 AC3 7 HOH A 508 HOH A 607 HOH A 647 SITE 1 AC4 6 GLY A 66 GLY A 67 GLY A 68 SER A 69 SITE 2 AC4 6 GLU A 70 HOH A 619 SITE 1 AC5 7 ASN A 125 ARG A 126 LYS A 127 SER A 128 SITE 2 AC5 7 HOH A 510 LYS B 268 HOH B 586 SITE 1 AC6 3 LYS A 153 HIS A 211 HOH A 414 SITE 1 AC7 4 SER A 190 ALA A 191 HOH A 474 HOH A 549 SITE 1 AC8 29 LEU B 6 GLY B 8 GLY B 9 GLN B 80 SITE 2 AC8 29 PRO B 83 ASP B 84 GLY B 85 LEU B 86 SITE 3 AC8 29 LEU B 106 ASP B 108 GLY B 144 GLU B 159 SITE 4 AC8 29 LYS B 160 VAL B 170 THR B 171 TYR B 174 SITE 5 AC8 29 ARG B 192 ILE B 197 THR B 198 SO4 B 302 SITE 6 AC8 29 HOH B 401 HOH B 406 HOH B 424 HOH B 441 SITE 7 AC8 29 HOH B 460 HOH B 579 HOH B 602 HOH B 614 SITE 8 AC8 29 HOH B 639 SITE 1 AC9 19 GLY A 216 ARG A 217 GLY A 218 LEU B 43 SITE 2 AC9 19 TYR B 112 GLY B 113 HIS B 114 GLY B 115 SITE 3 AC9 19 PHE B 116 THR B 117 VAL B 248 ALA B 249 SITE 4 AC9 19 GLU B 253 ILE B 254 HOH B 408 HOH B 416 SITE 5 AC9 19 HOH B 445 HOH B 511 HOH B 555 SITE 1 BC1 5 GLY B 9 SER B 10 GDU B 300 HOH B 455 SITE 2 BC1 5 HOH B 502 SITE 1 BC2 6 GLY B 66 GLY B 67 GLY B 68 SER B 69 SITE 2 BC2 6 HOH B 580 HOH B 657 SITE 1 BC3 3 ARG B 126 LYS B 127 SER B 128 SITE 1 BC4 5 HOH A 411 GLN B 265 HOH B 514 HOH B 586 SITE 2 BC4 5 HOH B 647 CRYST1 114.788 90.763 87.702 90.00 125.20 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008712 0.000000 0.006146 0.00000 SCALE2 0.000000 0.011018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013954 0.00000