HEADER TRANSFERASE 22-OCT-12 4HOJ TITLE CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE HOMOLOG FROM NEISSERIA TITLE 2 GONORRHOEAE, TARGET EFI-501841, WITH BOUND GLUTATHIONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REGF PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA GONORRHOEAE; SOURCE 3 ORGANISM_TAXID: 485; SOURCE 4 GENE: REGF; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS GST, GLUTATHIONE S-TRANSFERASE, ENZYME FUNCTION INITIATIVE, EFI, KEYWDS 2 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT, AUTHOR 4 S.C.ALMO,ENZYME FUNCTION INITIATIVE (EFI) REVDAT 2 20-SEP-23 4HOJ 1 REMARK SEQADV LINK REVDAT 1 07-NOV-12 4HOJ 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,R.N.ARMSTRONG,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GLUTATHIONE TRANSFERASE HOMOLOG FROM JRNL TITL 2 NEISSERIA GONORRHOEAE, TARGET EFI-501841, WITH BOUND JRNL TITL 3 GLUTATHIONE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 46474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.7237 - 3.5991 0.96 2714 136 0.1852 0.2106 REMARK 3 2 3.5991 - 2.8569 1.00 2683 158 0.1685 0.2086 REMARK 3 3 2.8569 - 2.4958 1.00 2611 151 0.1734 0.1904 REMARK 3 4 2.4958 - 2.2677 1.00 2616 140 0.1675 0.2008 REMARK 3 5 2.2677 - 2.1051 1.00 2651 132 0.1661 0.2144 REMARK 3 6 2.1051 - 1.9810 1.00 2594 135 0.1666 0.2133 REMARK 3 7 1.9810 - 1.8818 1.00 2607 133 0.1740 0.2008 REMARK 3 8 1.8818 - 1.7999 1.00 2563 139 0.1702 0.2066 REMARK 3 9 1.7999 - 1.7306 1.00 2600 109 0.1643 0.1942 REMARK 3 10 1.7306 - 1.6709 1.00 2590 127 0.1672 0.2058 REMARK 3 11 1.6709 - 1.6186 1.00 2586 147 0.1649 0.1904 REMARK 3 12 1.6186 - 1.5724 1.00 2538 150 0.1706 0.1932 REMARK 3 13 1.5724 - 1.5310 1.00 2590 135 0.1754 0.1766 REMARK 3 14 1.5310 - 1.4936 1.00 2539 131 0.1936 0.2117 REMARK 3 15 1.4936 - 1.4597 1.00 2545 145 0.2068 0.2530 REMARK 3 16 1.4597 - 1.4286 1.00 2539 150 0.2240 0.2596 REMARK 3 17 1.4286 - 1.4000 1.00 2557 133 0.2408 0.2708 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 1684 REMARK 3 ANGLE : 1.714 2276 REMARK 3 CHIRALITY : 0.104 243 REMARK 3 PLANARITY : 0.010 299 REMARK 3 DIHEDRAL : 14.186 663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 2:73 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3727 17.3654 12.3373 REMARK 3 T TENSOR REMARK 3 T11: 0.0937 T22: 0.0754 REMARK 3 T33: 0.0984 T12: 0.0007 REMARK 3 T13: 0.0261 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.0877 L22: 1.1433 REMARK 3 L33: 2.1331 L12: 0.4044 REMARK 3 L13: -0.0027 L23: -0.2827 REMARK 3 S TENSOR REMARK 3 S11: 0.0334 S12: -0.0378 S13: 0.2284 REMARK 3 S21: 0.0487 S22: 0.0380 S23: 0.1373 REMARK 3 S31: -0.2997 S32: -0.1271 S33: -0.0505 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 74:83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7814 24.0275 9.4980 REMARK 3 T TENSOR REMARK 3 T11: 0.3908 T22: 0.3149 REMARK 3 T33: 0.3062 T12: -0.1653 REMARK 3 T13: 0.0770 T23: -0.1054 REMARK 3 L TENSOR REMARK 3 L11: 1.1651 L22: 4.5457 REMARK 3 L33: 4.1640 L12: -2.2046 REMARK 3 L13: -1.8441 L23: 2.8106 REMARK 3 S TENSOR REMARK 3 S11: -0.0784 S12: -0.0747 S13: 0.4249 REMARK 3 S21: -0.2176 S22: 0.2408 S23: -0.0691 REMARK 3 S31: -0.0412 S32: 0.3808 S33: -0.1580 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 84:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1355 4.6367 6.5413 REMARK 3 T TENSOR REMARK 3 T11: 0.1215 T22: 0.1304 REMARK 3 T33: 0.1040 T12: -0.0091 REMARK 3 T13: -0.0005 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.8464 L22: 2.9967 REMARK 3 L33: 3.3829 L12: 2.1623 REMARK 3 L13: -1.1471 L23: -1.2908 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: -0.0427 S13: 0.0452 REMARK 3 S21: -0.1462 S22: 0.0375 S23: 0.0996 REMARK 3 S31: 0.1290 S32: -0.0488 S33: 0.0616 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 115:132 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1340 -7.8609 13.5488 REMARK 3 T TENSOR REMARK 3 T11: 0.3997 T22: 0.1834 REMARK 3 T33: 0.2545 T12: -0.0256 REMARK 3 T13: 0.0404 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 2.7403 L22: 5.2498 REMARK 3 L33: 2.9128 L12: 3.5438 REMARK 3 L13: 0.5455 L23: -0.0144 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: 0.3689 S13: -0.9163 REMARK 3 S21: -0.2786 S22: 0.1124 S23: -0.1758 REMARK 3 S31: 0.9507 S32: -0.1398 S33: 0.0079 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 133:148 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1124 10.3859 13.7600 REMARK 3 T TENSOR REMARK 3 T11: 0.1101 T22: 0.4794 REMARK 3 T33: 0.2964 T12: -0.0795 REMARK 3 T13: 0.0219 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 0.1251 L22: 2.2664 REMARK 3 L33: 0.5796 L12: 0.1431 REMARK 3 L13: -0.2688 L23: -0.3763 REMARK 3 S TENSOR REMARK 3 S11: -0.0767 S12: -0.0863 S13: -0.5212 REMARK 3 S21: -0.0178 S22: -0.0315 S23: -0.6453 REMARK 3 S31: -0.0173 S32: 0.4572 S33: -0.0288 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 149:169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5319 3.3987 18.7853 REMARK 3 T TENSOR REMARK 3 T11: 0.0491 T22: 0.1191 REMARK 3 T33: 0.0878 T12: 0.0051 REMARK 3 T13: 0.0083 T23: -0.0166 REMARK 3 L TENSOR REMARK 3 L11: 2.6919 L22: 2.2421 REMARK 3 L33: 2.9662 L12: 0.9519 REMARK 3 L13: -1.0751 L23: -0.2809 REMARK 3 S TENSOR REMARK 3 S11: -0.1136 S12: -0.0496 S13: -0.1841 REMARK 3 S21: 0.0470 S22: 0.0172 S23: -0.2156 REMARK 3 S31: 0.1493 S32: 0.1976 S33: 0.0911 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESID 170:183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0964 3.2761 21.5115 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.4116 REMARK 3 T33: 0.2814 T12: 0.0269 REMARK 3 T13: -0.0245 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 3.7933 L22: 4.5137 REMARK 3 L33: 3.1199 L12: -2.7506 REMARK 3 L13: -0.1209 L23: 0.4905 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.4141 S13: -0.2671 REMARK 3 S21: 0.2738 S22: -0.0657 S23: -0.6229 REMARK 3 S31: 0.2849 S32: 0.7441 S33: -0.0360 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN A AND (RESID 184:201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8458 12.8275 26.0270 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1779 REMARK 3 T33: 0.0889 T12: -0.0481 REMARK 3 T13: 0.0026 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 3.9124 L22: 3.2727 REMARK 3 L33: 1.4947 L12: 2.0961 REMARK 3 L13: -1.5319 L23: -0.9976 REMARK 3 S TENSOR REMARK 3 S11: 0.1201 S12: -0.3173 S13: 0.0247 REMARK 3 S21: 0.3287 S22: 0.0274 S23: -0.1395 REMARK 3 S31: -0.1578 S32: 0.3627 S33: -0.0907 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HOJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075722. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46474 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 160.236 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : 0.04800 REMARK 200 FOR THE DATA SET : 15.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : 0.51500 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1YY7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES, PH 7.5, 100 MM REMARK 280 NACL), RESERVOIR (0.2 M CALCIUM ACETATE, 0.1 M IMIDAZOLE:HCL, PH REMARK 280 8.0, 10% (W/V) PEG 8000), CRYOPROTECTION (RESERVOIR + 20% REMARK 280 DIETHYLENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.41200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.82400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 106.82400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 53.41200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -57.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 441 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 562 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 636 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 MET A 1 REMARK 465 PHE A 136 REMARK 465 SER A 137 REMARK 465 LYS A 138 REMARK 465 ALA A 202 REMARK 465 GLU A 203 REMARK 465 ASN A 204 REMARK 465 LEU A 205 REMARK 465 TYR A 206 REMARK 465 PHE A 207 REMARK 465 GLN A 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 589 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 661 O HOH A 661 6555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 98 CD GLU A 98 OE2 -0.088 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 15 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 36 68.74 -150.03 REMARK 500 ARG A 56 -122.93 51.75 REMARK 500 GLU A 62 105.32 74.48 REMARK 500 LEU A 101 -51.38 -120.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 162 OD1 REMARK 620 2 ASP A 162 O 78.8 REMARK 620 3 ASP A 165 OD1 154.8 80.0 REMARK 620 4 HOH A 454 O 86.0 95.0 82.4 REMARK 620 5 HOH A 636 O 119.3 79.8 69.6 152.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 176 O REMARK 620 2 GLU A 180 OE2 104.1 REMARK 620 3 HOH A 491 O 157.2 97.8 REMARK 620 4 HOH A 639 O 81.4 87.5 106.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GSH A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-501841 RELATED DB: TARGETTRACK DBREF 4HOJ A 1 201 UNP O33374 O33374_NEIGO 1 201 SEQADV 4HOJ MET A -1 UNP O33374 EXPRESSION TAG SEQADV 4HOJ VAL A 0 UNP O33374 EXPRESSION TAG SEQADV 4HOJ ALA A 202 UNP O33374 EXPRESSION TAG SEQADV 4HOJ GLU A 203 UNP O33374 EXPRESSION TAG SEQADV 4HOJ ASN A 204 UNP O33374 EXPRESSION TAG SEQADV 4HOJ LEU A 205 UNP O33374 EXPRESSION TAG SEQADV 4HOJ TYR A 206 UNP O33374 EXPRESSION TAG SEQADV 4HOJ PHE A 207 UNP O33374 EXPRESSION TAG SEQADV 4HOJ GLN A 208 UNP O33374 EXPRESSION TAG SEQRES 1 A 210 MET VAL MET MET THR LEU TYR SER GLY ILE THR CYS PRO SEQRES 2 A 210 PHE SER HIS ARG CYS ARG PHE VAL LEU TYR GLU LYS GLY SEQRES 3 A 210 MET ASP PHE GLU ILE LYS ASP ILE ASP ILE TYR ASN LYS SEQRES 4 A 210 PRO GLU ASP LEU ALA VAL MET ASN PRO TYR ASN GLN VAL SEQRES 5 A 210 PRO VAL LEU VAL GLU ARG ASP LEU VAL LEU HIS GLU SER SEQRES 6 A 210 ASN ILE ILE ASN GLU TYR ILE ASP GLU ARG PHE PRO HIS SEQRES 7 A 210 PRO GLN LEU MET PRO GLY ASP PRO VAL MET ARG GLY ARG SEQRES 8 A 210 GLY ARG LEU VAL LEU TYR ARG MET GLU LYS GLU LEU PHE SEQRES 9 A 210 ASN HIS VAL GLN VAL LEU GLU ASN PRO ALA ALA ALA ASN SEQRES 10 A 210 LYS GLU GLN ALA LYS ALA ARG GLU ALA ILE GLY ASN GLY SEQRES 11 A 210 LEU THR MET LEU SER PRO SER PHE SER LYS SER LYS TYR SEQRES 12 A 210 ILE LEU GLY GLU ASP PHE SER MET ILE ASP VAL ALA LEU SEQRES 13 A 210 ALA PRO LEU LEU TRP ARG LEU ASP HIS TYR ASP VAL LYS SEQRES 14 A 210 LEU GLY LYS SER ALA ALA PRO LEU LEU LYS TYR ALA GLU SEQRES 15 A 210 ARG ILE PHE GLN ARG GLU ALA PHE ILE GLU ALA LEU THR SEQRES 16 A 210 PRO ALA GLU LYS ALA MET ARG LYS ALA GLU ASN LEU TYR SEQRES 17 A 210 PHE GLN HET CA A 301 1 HET GSH A 302 20 HET ACT A 303 4 HET CA A 304 1 HETNAM CA CALCIUM ION HETNAM GSH GLUTATHIONE HETNAM ACT ACETATE ION FORMUL 2 CA 2(CA 2+) FORMUL 3 GSH C10 H17 N3 O6 S FORMUL 4 ACT C2 H3 O2 1- FORMUL 6 HOH *266(H2 O) HELIX 1 1 CYS A 10 GLY A 24 1 15 HELIX 2 2 PRO A 38 ASN A 45 1 8 HELIX 3 3 GLU A 62 PHE A 74 1 13 HELIX 4 4 ASP A 83 LEU A 101 1 19 HELIX 5 5 LEU A 101 ASN A 110 1 10 HELIX 6 6 ALA A 114 SER A 133 1 20 HELIX 7 7 SER A 148 ARG A 160 1 13 HELIX 8 8 GLY A 169 SER A 171 5 3 HELIX 9 9 ALA A 172 GLN A 184 1 13 HELIX 10 10 ARG A 185 LEU A 192 1 8 HELIX 11 11 THR A 193 ALA A 198 1 6 SHEET 1 A 4 GLU A 28 ASP A 31 0 SHEET 2 A 4 THR A 3 SER A 6 1 N LEU A 4 O LYS A 30 SHEET 3 A 4 VAL A 52 GLU A 55 -1 O VAL A 52 N TYR A 5 SHEET 4 A 4 LEU A 58 HIS A 61 -1 O LEU A 60 N LEU A 53 LINK OD1 ASP A 162 CA CA A 301 1555 1555 2.22 LINK O ASP A 162 CA CA A 301 1555 1555 2.32 LINK OD1 ASP A 165 CA CA A 301 1555 1555 2.38 LINK O LEU A 176 CA CA A 304 1555 1555 2.95 LINK OE2 GLU A 180 CA CA A 304 1555 1555 2.39 LINK CA CA A 301 O HOH A 454 1555 1555 2.38 LINK CA CA A 301 O HOH A 636 1555 1555 2.59 LINK CA CA A 304 O HOH A 491 1555 1555 2.46 LINK CA CA A 304 O HOH A 639 1555 1555 3.01 CISPEP 1 VAL A 50 PRO A 51 0 4.58 CISPEP 2 HIS A 76 PRO A 77 0 -0.23 SITE 1 AC1 5 ASP A 162 ASP A 165 HOH A 454 HOH A 463 SITE 2 AC1 5 HOH A 636 SITE 1 AC2 16 CYS A 10 PHE A 12 LYS A 37 GLN A 49 SITE 2 AC2 16 VAL A 50 PRO A 51 GLU A 62 SER A 63 SITE 3 AC2 16 HOH A 401 HOH A 405 HOH A 423 HOH A 435 SITE 4 AC2 16 HOH A 450 HOH A 482 HOH A 492 HOH A 536 SITE 1 AC3 5 VAL A 93 ARG A 96 MET A 97 GLU A 100 SITE 2 AC3 5 LEU A 132 SITE 1 AC4 4 LEU A 176 GLU A 180 HOH A 491 HOH A 639 CRYST1 49.876 49.876 160.236 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020050 0.011576 0.000000 0.00000 SCALE2 0.000000 0.023151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006241 0.00000