HEADER ISOMERASE 23-OCT-12 4HOZ TITLE THE CRYSTAL STRUCTURE OF ISOMALTULOSE SYNTHASE MUTANT D241A FROM TITLE 2 ERWINIA RHAPONTICI NX5 IN COMPLEX WITH D-GLUCOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUCROSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 42-600; COMPND 5 SYNONYM: ISOMALTULOSE SYNTHASE; COMPND 6 EC: 5.4.99.11; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ERWINIA RHAPONTICI; SOURCE 3 ORGANISM_TAXID: 55212; SOURCE 4 STRAIN: NX5; SOURCE 5 GENE: PALI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-22B KEYWDS TIM BARREL, ISOMERASE, HYDROLASE, CALCIUM BINDING EXPDTA X-RAY DIFFRACTION AUTHOR Z.XU,S.LI,H.XU,J.ZHOU REVDAT 3 08-NOV-23 4HOZ 1 HETSYN REVDAT 2 29-JUL-20 4HOZ 1 COMPND REMARK SEQADV HETNAM REVDAT 2 2 1 LINK SITE REVDAT 1 16-OCT-13 4HOZ 0 JRNL AUTH Z.XU,S.LI,J.LI,Y.LI,X.FENG,R.WANG,H.XU,J.ZHOU JRNL TITL THE STRUCTURAL BASIS OF ERWINIA RHAPONTICI ISOMALTULOSE JRNL TITL 2 SYNTHASE JRNL REF PLOS ONE V. 8 74788 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24069347 JRNL DOI 10.1371/JOURNAL.PONE.0074788 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 43101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2899 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4657 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 563 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.01000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.344 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4840 ; 0.019 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6570 ; 1.884 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 6.389 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 274 ;38.936 ;24.161 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 805 ;14.385 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;16.761 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 664 ; 0.161 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3834 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HOZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-OCT-12. REMARK 100 THE DEPOSITION ID IS D_1000075738. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 299859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6240 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.49100 REMARK 200 R SYM FOR SHELL (I) : 0.49100 REMARK 200 FOR SHELL : 2.788 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4HOW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29% PEG 8000, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, 10% GLYCEROL, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.36850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.94400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.24000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.94400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.36850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.24000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1215 O HOH A 1334 1.89 REMARK 500 OD1 ASP A 425 O HOH A 1197 1.91 REMARK 500 O HOH A 1144 O HOH A 1247 2.03 REMARK 500 OE1 GLU A 266 O HOH A 1280 2.09 REMARK 500 O HOH A 1144 O HOH A 1305 2.14 REMARK 500 O HOH A 1247 O HOH A 1350 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CE MET A 556 O HOH A 1254 3554 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASP A 88 CB ASP A 88 CG -0.140 REMARK 500 HIS A 203 CG HIS A 203 CD2 0.056 REMARK 500 HIS A 368 CG HIS A 368 CD2 0.060 REMARK 500 TRP A 384 CE2 TRP A 384 CD2 0.076 REMARK 500 HIS A 513 CG HIS A 513 CD2 0.055 REMARK 500 HIS A 576 CG HIS A 576 CD2 0.059 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 88 N - CA - CB ANGL. DEV. = -11.7 DEGREES REMARK 500 ASP A 88 CB - CG - OD1 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG A 136 NE - CZ - NH1 ANGL. DEV. = 7.8 DEGREES REMARK 500 ARG A 136 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 ASP A 148 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 493 CB - CG - OD1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ASP A 493 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 43 85.36 109.73 REMARK 500 PHE A 61 -65.62 -90.99 REMARK 500 ASP A 166 35.26 -98.00 REMARK 500 PHE A 205 -135.48 -99.70 REMARK 500 GLN A 209 66.96 -119.69 REMARK 500 THR A 242 60.27 31.57 REMARK 500 ASN A 262 55.44 -154.74 REMARK 500 VAL A 284 -60.26 -128.39 REMARK 500 ILE A 296 59.33 -94.97 REMARK 500 GLU A 314 -95.88 -120.12 REMARK 500 ASN A 367 -160.26 -176.58 REMARK 500 LYS A 419 -67.74 -108.11 REMARK 500 HIS A 576 -41.63 -135.20 REMARK 500 TRP A 591 18.32 56.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 ASN A 65 OD1 80.0 REMARK 620 3 ASP A 67 OD1 89.6 81.6 REMARK 620 4 ILE A 69 O 86.8 160.0 83.3 REMARK 620 5 ASP A 71 OD2 86.8 103.6 173.0 90.5 REMARK 620 6 HOH A 806 O 165.0 85.1 86.1 107.0 98.8 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HOW RELATED DB: PDB REMARK 900 RELATED ID: 4HOX RELATED DB: PDB REMARK 900 RELATED ID: 4HP5 RELATED DB: PDB REMARK 900 RELATED ID: 4HPH RELATED DB: PDB DBREF 4HOZ A 42 600 UNP D9MPF2 D9MPF2_ERWRD 42 600 SEQADV 4HOZ ALA A 241 UNP D9MPF2 ASP 241 ENGINEERED MUTATION SEQRES 1 A 559 ASN ALA LEU PRO THR TRP TRP LYS GLN ALA VAL PHE TYR SEQRES 2 A 559 GLN VAL TYR PRO ARG SER PHE LYS ASP THR ASN GLY ASP SEQRES 3 A 559 GLY ILE GLY ASP LEU ASN GLY ILE ILE GLU ASN LEU ASP SEQRES 4 A 559 TYR LEU LYS LYS LEU GLY ILE ASP ALA ILE TRP ILE ASN SEQRES 5 A 559 PRO HIS TYR ASP SER PRO ASN THR ASP ASN GLY TYR ASP SEQRES 6 A 559 ILE ARG ASP TYR ARG LYS ILE MET LYS GLU TYR GLY THR SEQRES 7 A 559 MET GLU ASP PHE ASP ARG LEU ILE SER GLU MET LYS LYS SEQRES 8 A 559 ARG ASN MET ARG LEU MET ILE ASP ILE VAL ILE ASN HIS SEQRES 9 A 559 THR SER ASP GLN HIS ALA TRP PHE VAL GLN SER LYS SER SEQRES 10 A 559 GLY LYS ASN ASN PRO TYR ARG ASP TYR TYR PHE TRP ARG SEQRES 11 A 559 ASP GLY LYS ASP GLY HIS ALA PRO ASN ASN TYR PRO SER SEQRES 12 A 559 PHE PHE GLY GLY SER ALA TRP GLU LYS ASP ASP LYS SER SEQRES 13 A 559 GLY GLN TYR TYR LEU HIS TYR PHE ALA LYS GLN GLN PRO SEQRES 14 A 559 ASP LEU ASN TRP ASP ASN PRO LYS VAL ARG GLN ASP LEU SEQRES 15 A 559 TYR ASP MET LEU ARG PHE TRP LEU ASP LYS GLY VAL SER SEQRES 16 A 559 GLY LEU ARG PHE ALA THR VAL ALA THR TYR SER LYS ILE SEQRES 17 A 559 PRO ASN PHE PRO ASP LEU SER GLN GLN GLN LEU LYS ASN SEQRES 18 A 559 PHE ALA GLU GLU TYR THR LYS GLY PRO LYS ILE HIS ASP SEQRES 19 A 559 TYR VAL ASN GLU MET ASN ARG GLU VAL LEU SER HIS TYR SEQRES 20 A 559 ASP ILE ALA THR ALA GLY GLU ILE PHE GLY VAL PRO LEU SEQRES 21 A 559 ASP LYS SER ILE LYS PHE PHE ASP ARG ARG ARG ASN GLU SEQRES 22 A 559 LEU ASN ILE ALA PHE THR PHE ASP LEU ILE ARG LEU ASP SEQRES 23 A 559 ARG ASP ALA ASP GLU ARG TRP ARG ARG LYS ASP TRP THR SEQRES 24 A 559 LEU SER GLN PHE ARG LYS ILE VAL ASP LYS VAL ASP GLN SEQRES 25 A 559 THR ALA GLY GLU TYR GLY TRP ASN ALA PHE PHE LEU ASP SEQRES 26 A 559 ASN HIS ASP ASN PRO ARG ALA VAL SER HIS PHE GLY ASP SEQRES 27 A 559 ASP ARG PRO GLN TRP ARG GLU HIS ALA ALA LYS ALA LEU SEQRES 28 A 559 ALA THR LEU THR LEU THR GLN ARG ALA THR PRO PHE ILE SEQRES 29 A 559 TYR GLN GLY SER GLU LEU GLY MET THR ASN TYR PRO PHE SEQRES 30 A 559 LYS LYS ILE ASP ASP PHE ASP ASP VAL GLU VAL LYS GLY SEQRES 31 A 559 PHE TRP GLN ASP TYR VAL GLU THR GLY LYS VAL LYS ALA SEQRES 32 A 559 GLU GLU PHE LEU GLN ASN VAL ARG GLN THR SER ARG ASP SEQRES 33 A 559 ASN SER ARG THR PRO PHE GLN TRP ASP ALA SER LYS ASN SEQRES 34 A 559 ALA GLY PHE THR SER GLY THR PRO TRP LEU LYS ILE ASN SEQRES 35 A 559 PRO ASN TYR LYS GLU ILE ASN SER ALA ASP GLN ILE ASN SEQRES 36 A 559 ASN PRO ASN SER VAL PHE ASN TYR TYR ARG LYS LEU ILE SEQRES 37 A 559 ASN ILE ARG HIS ASP ILE PRO ALA LEU THR TYR GLY SER SEQRES 38 A 559 TYR ILE ASP LEU ASP PRO ASP ASN ASN SER VAL TYR ALA SEQRES 39 A 559 TYR THR ARG THR LEU GLY ALA GLU LYS TYR LEU VAL VAL SEQRES 40 A 559 ILE ASN PHE LYS GLU GLU VAL MET HIS TYR THR LEU PRO SEQRES 41 A 559 GLY ASP LEU SER ILE ASN LYS VAL ILE THR GLU ASN ASN SEQRES 42 A 559 SER HIS THR ILE VAL ASN LYS ASN ASP ARG GLN LEU ARG SEQRES 43 A 559 LEU GLU PRO TRP GLN SER GLY ILE TYR LYS LEU ASN PRO HET CA A 701 1 HET GOL A 702 6 HET GLC A 703 12 HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 CA CA 2+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 GLC C6 H12 O6 FORMUL 5 HOH *563(H2 O) HELIX 1 1 THR A 46 ALA A 51 1 6 HELIX 2 2 TYR A 57 PHE A 61 5 5 HELIX 3 3 ASP A 71 ASN A 78 1 8 HELIX 4 4 ASN A 78 GLY A 86 1 9 HELIX 5 5 LYS A 115 GLY A 118 5 4 HELIX 6 6 THR A 119 ARG A 133 1 15 HELIX 7 7 HIS A 150 LYS A 157 1 8 HELIX 8 8 TYR A 164 TYR A 168 5 5 HELIX 9 9 ASN A 216 ASP A 232 1 17 HELIX 10 10 THR A 242 TYR A 246 5 5 HELIX 11 11 GLN A 258 ASN A 262 5 5 HELIX 12 12 PHE A 263 THR A 268 1 6 HELIX 13 13 LYS A 272 VAL A 284 1 13 HELIX 14 14 LEU A 285 TYR A 288 5 4 HELIX 15 15 PRO A 300 LYS A 303 5 4 HELIX 16 16 SER A 304 ASP A 309 1 6 HELIX 17 17 ARG A 310 ASN A 313 5 4 HELIX 18 18 THR A 340 GLY A 356 1 17 HELIX 19 19 ARG A 372 PHE A 377 1 6 HELIX 20 20 TRP A 384 LEU A 397 1 14 HELIX 21 21 GLY A 408 GLY A 412 5 5 HELIX 22 22 LYS A 420 PHE A 424 5 5 HELIX 23 23 ASP A 426 VAL A 437 1 12 HELIX 24 24 LYS A 443 SER A 455 1 13 HELIX 25 25 ARG A 456 ARG A 460 5 5 HELIX 26 26 SER A 468 PHE A 473 5 6 HELIX 27 27 ASN A 483 GLU A 488 5 6 HELIX 28 28 SER A 500 ILE A 515 1 16 HELIX 29 29 PRO A 516 GLY A 521 1 6 SHEET 1 A 8 ILE A 317 PHE A 319 0 SHEET 2 A 8 ALA A 291 GLU A 295 1 N GLY A 294 O ILE A 317 SHEET 3 A 8 GLY A 237 PHE A 240 1 N LEU A 238 O ALA A 293 SHEET 4 A 8 ARG A 136 ILE A 141 1 N ILE A 141 O ARG A 239 SHEET 5 A 8 ALA A 89 ILE A 92 1 N ILE A 90 O MET A 138 SHEET 6 A 8 PHE A 53 VAL A 56 1 N TYR A 54 O TRP A 91 SHEET 7 A 8 THR A 402 TYR A 406 1 O ILE A 405 N PHE A 53 SHEET 8 A 8 ALA A 362 PHE A 363 1 N PHE A 363 O THR A 402 SHEET 1 B 2 TYR A 96 ASP A 97 0 SHEET 2 B 2 ASP A 109 ILE A 113 -1 O LYS A 112 N ASP A 97 SHEET 1 C 3 TRP A 170 ARG A 171 0 SHEET 2 C 3 TYR A 200 LEU A 202 -1 O TYR A 200 N ARG A 171 SHEET 3 C 3 TRP A 191 LYS A 193 -1 N GLU A 192 O TYR A 201 SHEET 1 D 5 SER A 522 ASP A 525 0 SHEET 2 D 5 VAL A 533 LEU A 540 -1 O THR A 537 N ILE A 524 SHEET 3 D 5 GLU A 543 ASN A 550 -1 O VAL A 547 N TYR A 536 SHEET 4 D 5 SER A 593 LEU A 598 -1 O TYR A 596 N LEU A 546 SHEET 5 D 5 ILE A 566 ASN A 573 -1 N ASN A 567 O LYS A 597 SHEET 1 E 2 MET A 556 THR A 559 0 SHEET 2 E 2 GLN A 585 LEU A 588 -1 O LEU A 588 N MET A 556 LINK OD1 ASP A 63 CA CA A 701 1555 1555 2.45 LINK OD1 ASN A 65 CA CA A 701 1555 1555 2.50 LINK OD1 ASP A 67 CA CA A 701 1555 1555 2.47 LINK O ILE A 69 CA CA A 701 1555 1555 2.40 LINK OD2 ASP A 71 CA CA A 701 1555 1555 2.51 LINK CA CA A 701 O HOH A 806 1555 1555 2.39 CRYST1 58.737 82.480 137.888 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017025 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007252 0.00000