data_4HP2 # _entry.id 4HP2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4HP2 RCSB RCSB075741 WWPDB D_1000075741 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HP2 _pdbx_database_status.recvd_initial_deposition_date 2012-10-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Proepper, K.' 1 'Holstein, J.J.' 2 'Huebschle, C.B.' 3 'Bond, C.S.' 4 'Dittrich, B.' 5 # _citation.id primary _citation.title 'Invariom refinement of a new monoclinic solvate of thiostrepton at 0.64 angstrom resolution.' _citation.journal_abbrev 'Acta Crystallogr.,Sect.D' _citation.journal_volume 69 _citation.page_first 1530 _citation.page_last 1539 _citation.year 2013 _citation.journal_id_ASTM ABCRE6 _citation.country DK _citation.journal_id_ISSN 0907-4449 _citation.journal_id_CSD 0766 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23897476 _citation.pdbx_database_id_DOI 10.1107/S0907444913010664 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Propper, K.' 1 primary 'Holstein, J.J.' 2 primary 'Hubschle, C.B.' 3 primary 'Bond, C.S.' 4 primary 'Dittrich, B.' 5 # _cell.entry_id 4HP2 _cell.length_a 21.394 _cell.length_b 22.870 _cell.length_c 22.780 _cell.angle_alpha 90.00 _cell.angle_beta 106.45 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4HP2 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat Thiostrepton 1805.985 2 ? ? 'UNP RESIDUES 56-72' ? 2 non-polymer syn DIMETHYLFORMAMIDE 73.094 8 ? ? ? ? 3 non-polymer syn 'diethyl ether' 74.122 6 ? ? ? ? 4 water nat water 18.015 2 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alaninamide, Bryamycin, Gargon, Thiactin' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(QUA)IA(DHA)AS(BB9)T(DBU)(DCY)(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(DHA)(NH2)' _entity_poly.pdbx_seq_one_letter_code_can XIASASCTTCXCTCXCSSX _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 QUA n 1 2 ILE n 1 3 ALA n 1 4 DHA n 1 5 ALA n 1 6 SER n 1 7 BB9 n 1 8 THR n 1 9 DBU n 1 10 DCY n 1 11 TS9 n 1 12 BB9 n 1 13 THR n 1 14 BB9 n 1 15 MH6 n 1 16 BB9 n 1 17 DHA n 1 18 DHA n 1 19 NH2 n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Streptomyces azureus' _entity_src_nat.pdbx_ncbi_taxonomy_id 146537 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain MST-AS4632 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name UNP _struct_ref.db_code THCL_STRAJ _struct_ref.pdbx_db_accession P0C8P8 _struct_ref.pdbx_seq_one_letter_code IASASCTTCICTCSCSS _struct_ref.pdbx_align_begin 56 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HP2 A 2 ? 18 ? P0C8P8 56 ? 72 ? 2 18 2 1 4HP2 B 2 ? 18 ? P0C8P8 56 ? 72 ? 2 18 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4HP2 QUA A 1 ? UNP P0C8P8 ? ? 'SEE REMARK 999' 1 1 1 4HP2 NH2 A 19 ? UNP P0C8P8 ? ? AMIDATION 19 2 2 4HP2 QUA B 1 ? UNP P0C8P8 ? ? 'SEE REMARK 999' 1 3 2 4HP2 NH2 B 19 ? UNP P0C8P8 ? ? AMIDATION 19 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 DMF non-polymer . DIMETHYLFORMAMIDE ? 'C3 H7 N O' 73.094 ETZ non-polymer . 'diethyl ether' ? 'C4 H10 O' 74.122 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 # _exptl.entry_id 4HP2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.48 _exptl_crystal.density_percent_sol 16.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.00 _exptl_crystal_grow.pdbx_details 'DIMETHYLFORMAMID, DIETHYLETHER, pH 7.00, VAPOR DIFFUSION' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS3 X 6M' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.65 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SLS BEAMLINE X10SA' _diffrn_source.pdbx_synchrotron_site SLS _diffrn_source.pdbx_synchrotron_beamline X10SA _diffrn_source.pdbx_wavelength 0.65 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4HP2 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 50.000 _reflns.d_resolution_high 0.64 _reflns.number_obs 72903 _reflns.number_all ? _reflns.percent_possible_obs 91.0 _reflns.pdbx_Rmerge_I_obs 0.0505 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 16.88 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.61 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 0.64 _reflns_shell.d_res_low 0.65 _reflns_shell.percent_possible_all 46.4 _reflns_shell.Rmerge_I_obs 0.1457 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.46 _reflns_shell.pdbx_redundancy 0.67 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HP2 _refine.ls_number_reflns_obs 62211 _refine.ls_number_reflns_all 72903 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50.00 _refine.ls_d_res_high 0.64 _refine.ls_percent_reflns_obs 91.0 _refine.ls_R_factor_obs 0.0678 _refine.ls_R_factor_all 0.0756 _refine.ls_R_factor_R_work 0.0678 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'LEAST SQUARES' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SHELXS/DIRECT-METHODS _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 70 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 300 _refine_hist.d_res_high 0.64 _refine_hist.d_res_low 50.00 # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 4HP2 _pdbx_refine.R_factor_all_no_cutoff 0.0756 _pdbx_refine.R_factor_obs_no_cutoff 0.0678 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.0756 _pdbx_refine.R_factor_obs_4sig_cutoff 0.0678 _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 62211 # _struct.entry_id 4HP2 _struct.title 'Invariom refinement of a new dimeric monoclinic 2 solvate of thiostrepton at 0.64 angstrom resolution' _struct.pdbx_descriptor Thiostrepton _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HP2 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ANTIBIOTIC, THIOPEPTIDE, ANTIBACTERIAL, THIAZOLE, THIAZOLINE, OXAZOLE, RIBOSOME, TRANSLATION INHIBITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 2 ? K N N 2 ? L N N 2 ? M N N 2 ? N N N 2 ? O N N 2 ? P N N 3 ? Q N N 4 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A QUA 1 C11 ? ? ? 1_555 A THR 13 OG1 C ? A QUA 1 A THR 13 1_555 ? ? ? ? ? ? ? 1.359 ? covale2 covale ? ? A QUA 1 C11 ? ? ? 1_555 A THR 13 OG1 D ? A QUA 1 A THR 13 1_555 ? ? ? ? ? ? ? 1.305 ? covale3 covale ? ? B QUA 1 C11 ? ? ? 1_555 B THR 13 OG1 ? ? B QUA 1 B THR 13 1_555 ? ? ? ? ? ? ? 1.336 ? covale4 covale ? ? A QUA 1 C7 ? ? ? 1_555 A ILE 2 N ? ? A QUA 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.465 ? covale5 covale ? ? B QUA 1 C7 ? ? ? 1_555 B ILE 2 N ? ? B QUA 1 B ILE 2 1_555 ? ? ? ? ? ? ? 1.464 ? covale6 covale ? ? A ALA 3 C ? ? ? 1_555 A DHA 4 N ? ? A ALA 3 A DHA 4 1_555 ? ? ? ? ? ? ? 1.343 ? covale7 covale ? ? A DHA 4 C ? ? ? 1_555 A ALA 5 N ? ? A DHA 4 A ALA 5 1_555 ? ? ? ? ? ? ? 1.351 ? covale8 covale ? ? A SER 6 C ? ? ? 1_555 A BB9 7 N ? ? A SER 6 A BB9 7 1_555 ? ? ? ? ? ? ? 1.303 ? covale9 covale ? ? A BB9 7 C ? ? ? 1_555 A THR 8 N ? ? A BB9 7 A THR 8 1_555 ? ? ? ? ? ? ? 1.345 ? covale10 covale ? ? A THR 8 C ? ? ? 1_555 A DBU 9 N ? ? A THR 8 A DBU 9 1_555 ? ? ? ? ? ? ? 1.356 ? covale11 covale ? ? A DBU 9 C ? ? ? 1_555 A DCY 10 N ? ? A DBU 9 A DCY 10 1_555 ? ? ? ? ? ? ? 1.278 ? covale12 covale ? ? A DCY 10 C ? ? ? 1_555 A TS9 11 N ? ? A DCY 10 A TS9 11 1_555 ? ? ? ? ? ? ? 1.346 ? covale13 covale ? ? A TS9 11 C ? ? ? 1_555 A BB9 12 N ? ? A TS9 11 A BB9 12 1_555 ? ? ? ? ? ? ? 1.303 ? covale14 covale ? ? A BB9 12 C ? ? ? 1_555 A THR 13 N C ? A BB9 12 A THR 13 1_555 ? ? ? ? ? ? ? 1.337 ? covale15 covale ? ? A BB9 12 C ? ? ? 1_555 A THR 13 N D ? A BB9 12 A THR 13 1_555 ? ? ? ? ? ? ? 1.424 ? covale16 covale ? ? A THR 13 C C ? ? 1_555 A BB9 14 N C ? A THR 13 A BB9 14 1_555 ? ? ? ? ? ? ? 1.298 ? covale17 covale ? ? A THR 13 C D ? ? 1_555 A BB9 14 N D ? A THR 13 A BB9 14 1_555 ? ? ? ? ? ? ? 1.317 ? covale18 covale ? ? A BB9 14 C C ? ? 1_555 A MH6 15 N C ? A BB9 14 A MH6 15 1_555 ? ? ? ? ? ? ? 1.483 ? covale19 covale ? ? A BB9 14 C D ? ? 1_555 A MH6 15 N D ? A BB9 14 A MH6 15 1_555 ? ? ? ? ? ? ? 1.462 ? covale20 covale ? ? A MH6 15 C C ? ? 1_555 A BB9 16 N C ? A MH6 15 A BB9 16 1_555 ? ? ? ? ? ? ? 1.312 ? covale21 covale ? ? A MH6 15 C D ? ? 1_555 A BB9 16 N D ? A MH6 15 A BB9 16 1_555 ? ? ? ? ? ? ? 1.318 ? covale22 covale ? ? A BB9 16 C C ? ? 1_555 A DHA 17 N C ? A BB9 16 A DHA 17 1_555 ? ? ? ? ? ? ? 1.333 ? covale23 covale ? ? A BB9 16 C D ? ? 1_555 A DHA 17 N D ? A BB9 16 A DHA 17 1_555 ? ? ? ? ? ? ? 1.515 ? covale24 covale ? ? A DHA 17 C C ? ? 1_555 A DHA 18 N C ? A DHA 17 A DHA 18 1_555 ? ? ? ? ? ? ? 1.328 ? covale25 covale ? ? A DHA 17 C D ? ? 1_555 A DHA 18 N D ? A DHA 17 A DHA 18 1_555 ? ? ? ? ? ? ? 1.343 ? covale26 covale ? ? A DHA 18 C C ? ? 1_555 A NH2 19 N C ? A DHA 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.273 ? covale27 covale ? ? A DHA 18 C D ? ? 1_555 A NH2 19 N D ? A DHA 18 A NH2 19 1_555 ? ? ? ? ? ? ? 1.379 ? covale28 covale ? ? B ALA 3 C ? ? ? 1_555 B DHA 4 N ? ? B ALA 3 B DHA 4 1_555 ? ? ? ? ? ? ? 1.360 ? covale29 covale ? ? B DHA 4 C ? ? ? 1_555 B ALA 5 N ? ? B DHA 4 B ALA 5 1_555 ? ? ? ? ? ? ? 1.351 ? covale30 covale ? ? B SER 6 C A ? ? 1_555 B BB9 7 N A ? B SER 6 B BB9 7 1_555 ? ? ? ? ? ? ? 1.303 ? covale31 covale ? ? B SER 6 C B ? ? 1_555 B BB9 7 N B ? B SER 6 B BB9 7 1_555 ? ? ? ? ? ? ? 1.312 ? covale32 covale ? ? B BB9 7 C A ? ? 1_555 B THR 8 N ? ? B BB9 7 B THR 8 1_555 ? ? ? ? ? ? ? 1.328 ? covale33 covale ? ? B BB9 7 C B ? ? 1_555 B THR 8 N ? ? B BB9 7 B THR 8 1_555 ? ? ? ? ? ? ? 1.395 ? covale34 covale ? ? B THR 8 C ? ? ? 1_555 B DBU 9 N ? ? B THR 8 B DBU 9 1_555 ? ? ? ? ? ? ? 1.355 ? covale35 covale ? ? B DBU 9 C ? ? ? 1_555 B DCY 10 N ? ? B DBU 9 B DCY 10 1_555 ? ? ? ? ? ? ? 1.276 ? covale36 covale ? ? B DCY 10 C ? ? ? 1_555 B TS9 11 N ? ? B DCY 10 B TS9 11 1_555 ? ? ? ? ? ? ? 1.347 ? covale37 covale ? ? B TS9 11 C ? ? ? 1_555 B BB9 12 N ? ? B TS9 11 B BB9 12 1_555 ? ? ? ? ? ? ? 1.299 ? covale38 covale ? ? B BB9 12 C ? ? ? 1_555 B THR 13 N ? ? B BB9 12 B THR 13 1_555 ? ? ? ? ? ? ? 1.360 ? covale39 covale ? ? B THR 13 C A ? ? 1_555 B BB9 14 N A ? B THR 13 B BB9 14 1_555 ? ? ? ? ? ? ? 1.281 ? covale40 covale ? ? B THR 13 C B ? ? 1_555 B BB9 14 N B ? B THR 13 B BB9 14 1_555 ? ? ? ? ? ? ? 1.407 ? covale41 covale ? ? B BB9 14 C A ? ? 1_555 B MH6 15 N A ? B BB9 14 B MH6 15 1_555 ? ? ? ? ? ? ? 1.475 ? covale42 covale ? ? B BB9 14 C B ? ? 1_555 B MH6 15 N B ? B BB9 14 B MH6 15 1_555 ? ? ? ? ? ? ? 1.503 ? covale43 covale ? ? B MH6 15 C A ? ? 1_555 B BB9 16 N A ? B MH6 15 B BB9 16 1_555 ? ? ? ? ? ? ? 1.292 ? covale44 covale ? ? B MH6 15 C B ? ? 1_555 B BB9 16 N B ? B MH6 15 B BB9 16 1_555 ? ? ? ? ? ? ? 1.284 ? covale45 covale ? ? B BB9 16 C A ? ? 1_555 B DHA 17 N A ? B BB9 16 B DHA 17 1_555 ? ? ? ? ? ? ? 1.356 ? covale46 covale ? ? B BB9 16 C B ? ? 1_555 B DHA 17 N B ? B BB9 16 B DHA 17 1_555 ? ? ? ? ? ? ? 1.316 ? covale47 covale ? ? B DHA 17 C A ? ? 1_555 B DHA 18 N A ? B DHA 17 B DHA 18 1_555 ? ? ? ? ? ? ? 1.352 ? covale48 covale ? ? B DHA 17 C B ? ? 1_555 B DHA 18 N B ? B DHA 17 B DHA 18 1_555 ? ? ? ? ? ? ? 1.359 ? covale49 covale ? ? B DHA 18 C A ? ? 1_555 B NH2 19 N A ? B DHA 18 B NH2 19 1_555 ? ? ? ? ? ? ? 1.312 ? covale50 covale ? ? B DHA 18 C B ? ? 1_555 B NH2 19 N B ? B DHA 18 B NH2 19 1_555 ? ? ? ? ? ? ? 1.283 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE QUA A 1' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NH2 A 19' AC3 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE QUA B 1' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE NH2 B 19' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE DMF A 101' AC6 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE DMF A 102' AC7 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE ETZ A 103' AC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE ETZ A 104' AC9 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE ETZ A 105' BC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ETZ A 106' BC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE ETZ A 107' BC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE DMF A 108' BC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE DMF B 101' BC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE DMF B 102' BC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE DMF B 103' BC7 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE DMF B 104' BC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE DMF B 105' BC9 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE ETZ B 106' CC1 Software ? ? ? ? 28 'BINDING SITE FOR CHAIN A OF THIOSTREPTON' CC2 Software ? ? ? ? 29 'BINDING SITE FOR CHAIN B OF THIOSTREPTON' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ILE A 2 ? ILE A 2 . ? 1_555 ? 2 AC1 13 ALA A 3 ? ALA A 3 . ? 1_555 ? 3 AC1 13 DHA A 4 ? DHA A 4 . ? 1_555 ? 4 AC1 13 ALA A 5 ? ALA A 5 . ? 1_555 ? 5 AC1 13 SER A 6 ? SER A 6 . ? 1_555 ? 6 AC1 13 BB9 A 7 ? BB9 A 7 . ? 1_555 ? 7 AC1 13 THR A 8 ? THR A 8 . ? 1_555 ? 8 AC1 13 TS9 A 11 ? TS9 A 11 . ? 1_555 ? 9 AC1 13 THR A 13 ? THR A 13 . ? 1_555 ? 10 AC1 13 BB9 A 14 ? BB9 A 14 . ? 1_555 ? 11 AC1 13 HOH Q . ? HOH A 201 . ? 1_555 ? 12 AC1 13 QUA B 1 ? QUA B 1 . ? 1_554 ? 13 AC1 13 BB9 B 7 ? BB9 B 7 . ? 1_554 ? 14 AC2 5 DHA A 18 ? DHA A 18 . ? 1_555 ? 15 AC2 5 ETZ E . ? ETZ A 103 . ? 1_555 ? 16 AC2 5 ETZ F . ? ETZ A 104 . ? 1_555 ? 17 AC2 5 ETZ I . ? ETZ A 107 . ? 1_555 ? 18 AC2 5 ETZ P . ? ETZ B 106 . ? 1_555 ? 19 AC3 13 QUA A 1 ? QUA A 1 . ? 1_556 ? 20 AC3 13 BB9 A 7 ? BB9 A 7 . ? 1_556 ? 21 AC3 13 HOH Q . ? HOH A 202 . ? 1_656 ? 22 AC3 13 ILE B 2 ? ILE B 2 . ? 1_555 ? 23 AC3 13 ALA B 3 ? ALA B 3 . ? 1_555 ? 24 AC3 13 DHA B 4 ? DHA B 4 . ? 1_555 ? 25 AC3 13 ALA B 5 ? ALA B 5 . ? 1_555 ? 26 AC3 13 SER B 6 ? SER B 6 . ? 1_555 ? 27 AC3 13 BB9 B 7 ? BB9 B 7 . ? 1_555 ? 28 AC3 13 THR B 8 ? THR B 8 . ? 1_555 ? 29 AC3 13 TS9 B 11 ? TS9 B 11 . ? 1_555 ? 30 AC3 13 THR B 13 ? THR B 13 . ? 1_555 ? 31 AC3 13 BB9 B 14 ? BB9 B 14 . ? 1_555 ? 32 AC4 7 DMF D . ? DMF A 102 . ? 1_545 ? 33 AC4 7 ETZ E . ? ETZ A 103 . ? 1_555 ? 34 AC4 7 DCY B 10 ? DCY B 10 . ? 1_545 ? 35 AC4 7 BB9 B 12 ? BB9 B 12 . ? 1_545 ? 36 AC4 7 DHA B 18 ? DHA B 18 . ? 1_555 ? 37 AC4 7 DMF N . ? DMF B 104 . ? 1_555 ? 38 AC4 7 ETZ P . ? ETZ B 106 . ? 1_555 ? 39 AC5 4 ALA A 3 ? ALA A 3 . ? 1_555 ? 40 AC5 4 DHA A 4 ? DHA A 4 . ? 1_555 ? 41 AC5 4 ALA B 3 ? ALA B 3 . ? 1_454 ? 42 AC5 4 DHA B 4 ? DHA B 4 . ? 1_454 ? 43 AC6 13 ALA A 5 ? ALA A 5 . ? 1_555 ? 44 AC6 13 SER A 6 ? SER A 6 . ? 1_555 ? 45 AC6 13 BB9 A 12 ? BB9 A 12 . ? 1_555 ? 46 AC6 13 THR A 13 ? THR A 13 . ? 1_555 ? 47 AC6 13 BB9 A 14 ? BB9 A 14 . ? 1_555 ? 48 AC6 13 BB9 A 16 ? BB9 A 16 . ? 1_555 ? 49 AC6 13 DHA A 18 ? DHA A 18 . ? 1_565 ? 50 AC6 13 ETZ H . ? ETZ A 106 . ? 1_555 ? 51 AC6 13 DCY B 10 ? DCY B 10 . ? 1_555 ? 52 AC6 13 DHA B 18 ? DHA B 18 . ? 1_565 ? 53 AC6 13 NH2 B 19 ? NH2 B 19 . ? 1_565 ? 54 AC6 13 DMF O . ? DMF B 105 . ? 1_555 ? 55 AC6 13 ETZ P . ? ETZ B 106 . ? 1_565 ? 56 AC7 8 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 57 AC7 8 ETZ I . ? ETZ A 107 . ? 1_555 ? 58 AC7 8 DCY B 10 ? DCY B 10 . ? 1_545 ? 59 AC7 8 BB9 B 12 ? BB9 B 12 . ? 1_545 ? 60 AC7 8 BB9 B 14 ? BB9 B 14 . ? 1_545 ? 61 AC7 8 DHA B 18 ? DHA B 18 . ? 1_555 ? 62 AC7 8 NH2 B 19 ? NH2 B 19 . ? 1_555 ? 63 AC7 8 ETZ P . ? ETZ B 106 . ? 1_555 ? 64 AC8 7 THR A 8 ? THR A 8 . ? 1_545 ? 65 AC8 7 BB9 A 12 ? BB9 A 12 . ? 1_545 ? 66 AC8 7 BB9 A 14 ? BB9 A 14 . ? 1_545 ? 67 AC8 7 DHA A 18 ? DHA A 18 . ? 1_555 ? 68 AC8 7 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 69 AC8 7 ETZ I . ? ETZ A 107 . ? 1_555 ? 70 AC8 7 ETZ P . ? ETZ B 106 . ? 1_555 ? 71 AC9 2 ALA A 5 ? ALA A 5 . ? 1_555 ? 72 AC9 2 BB9 A 16 ? BB9 A 16 . ? 1_555 ? 73 BC1 4 BB9 A 12 ? BB9 A 12 . ? 1_555 ? 74 BC1 4 DMF D . ? DMF A 102 . ? 1_555 ? 75 BC1 4 DMF M . ? DMF B 103 . ? 1_555 ? 76 BC1 4 DMF O . ? DMF B 105 . ? 1_555 ? 77 BC2 8 DBU A 9 ? DBU A 9 . ? 1_545 ? 78 BC2 8 DCY A 10 ? DCY A 10 . ? 1_545 ? 79 BC2 8 DHA A 18 ? DHA A 18 . ? 1_555 ? 80 BC2 8 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 81 BC2 8 ETZ E . ? ETZ A 103 . ? 1_555 ? 82 BC2 8 ETZ F . ? ETZ A 104 . ? 1_555 ? 83 BC2 8 DMF J . ? DMF A 108 . ? 1_555 ? 84 BC2 8 DHA B 18 ? DHA B 18 . ? 1_555 ? 85 BC3 4 DHA A 18 ? DHA A 18 . ? 1_555 ? 86 BC3 4 ETZ I . ? ETZ A 107 . ? 1_555 ? 87 BC3 4 DHA B 18 ? DHA B 18 . ? 1_555 ? 88 BC3 4 DMF K . ? DMF B 101 . ? 1_555 ? 89 BC4 5 DMF J . ? DMF A 108 . ? 1_555 ? 90 BC4 5 DHA B 17 ? DHA B 17 . ? 1_555 ? 91 BC4 5 DHA B 18 ? DHA B 18 . ? 1_555 ? 92 BC4 5 DMF L . ? DMF B 102 . ? 1_555 ? 93 BC4 5 DMF N . ? DMF B 104 . ? 1_555 ? 94 BC5 6 DHA A 17 ? DHA A 17 . ? 1_555 ? 95 BC5 6 ALA B 5 ? ALA B 5 . ? 1_555 ? 96 BC5 6 DHA B 17 ? DHA B 17 . ? 1_555 ? 97 BC5 6 DHA B 18 ? DHA B 18 . ? 1_555 ? 98 BC5 6 DMF K . ? DMF B 101 . ? 1_555 ? 99 BC5 6 DMF N . ? DMF B 104 . ? 1_555 ? 100 BC6 5 BB9 A 16 ? BB9 A 16 . ? 1_555 ? 101 BC6 5 ETZ H . ? ETZ A 106 . ? 1_555 ? 102 BC6 5 SER B 6 ? SER B 6 . ? 1_555 ? 103 BC6 5 BB9 B 14 ? BB9 B 14 . ? 1_555 ? 104 BC6 5 DMF O . ? DMF B 105 . ? 1_555 ? 105 BC7 6 DCY B 10 ? DCY B 10 . ? 1_545 ? 106 BC7 6 DHA B 17 ? DHA B 17 . ? 1_555 ? 107 BC7 6 DHA B 18 ? DHA B 18 . ? 1_555 ? 108 BC7 6 NH2 B 19 ? NH2 B 19 . ? 1_555 ? 109 BC7 6 DMF K . ? DMF B 101 . ? 1_555 ? 110 BC7 6 DMF L . ? DMF B 102 . ? 1_555 ? 111 BC8 7 BB9 A 12 ? BB9 A 12 . ? 1_555 ? 112 BC8 7 BB9 A 16 ? BB9 A 16 . ? 1_555 ? 113 BC8 7 DMF D . ? DMF A 102 . ? 1_555 ? 114 BC8 7 ETZ H . ? ETZ A 106 . ? 1_555 ? 115 BC8 7 BB9 B 14 ? BB9 B 14 . ? 1_555 ? 116 BC8 7 MH6 B 15 ? MH6 B 15 . ? 1_555 ? 117 BC8 7 DMF M . ? DMF B 103 . ? 1_555 ? 118 BC9 9 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 119 BC9 9 DMF D . ? DMF A 102 . ? 1_545 ? 120 BC9 9 ETZ E . ? ETZ A 103 . ? 1_555 ? 121 BC9 9 ETZ F . ? ETZ A 104 . ? 1_555 ? 122 BC9 9 THR B 8 ? THR B 8 . ? 1_545 ? 123 BC9 9 DBU B 9 ? DBU B 9 . ? 1_545 ? 124 BC9 9 DCY B 10 ? DCY B 10 . ? 1_545 ? 125 BC9 9 BB9 B 12 ? BB9 B 12 . ? 1_545 ? 126 BC9 9 NH2 B 19 ? NH2 B 19 . ? 1_555 ? 127 CC1 28 QUA A 1 ? QUA A 1 . ? 1_555 ? 128 CC1 28 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 129 CC1 28 DMF C . ? DMF A 101 . ? 1_555 ? 130 CC1 28 DMF D . ? DMF A 102 . ? 1_555 ? 131 CC1 28 DMF D . ? DMF A 102 . ? 1_545 ? 132 CC1 28 ETZ F . ? ETZ A 104 . ? 1_565 ? 133 CC1 28 ETZ F . ? ETZ A 104 . ? 1_555 ? 134 CC1 28 ETZ G . ? ETZ A 105 . ? 1_555 ? 135 CC1 28 ETZ H . ? ETZ A 106 . ? 1_555 ? 136 CC1 28 ETZ I . ? ETZ A 107 . ? 1_565 ? 137 CC1 28 ETZ I . ? ETZ A 107 . ? 1_555 ? 138 CC1 28 DMF J . ? DMF A 108 . ? 1_555 ? 139 CC1 28 HOH Q . ? HOH A 201 . ? 1_555 ? 140 CC1 28 HOH Q . ? HOH A 202 . ? 1_555 ? 141 CC1 28 QUA B 1 ? QUA B 1 . ? 1_554 ? 142 CC1 28 ILE B 2 ? ILE B 2 . ? 1_454 ? 143 CC1 28 ALA B 3 ? ALA B 3 . ? 1_454 ? 144 CC1 28 TS9 B 11 ? TS9 B 11 . ? 1_454 ? 145 CC1 28 BB9 B 12 ? BB9 B 12 . ? 1_454 ? 146 CC1 28 THR B 13 ? THR B 13 . ? 1_454 ? 147 CC1 28 MH6 B 15 ? MH6 B 15 . ? 1_555 ? 148 CC1 28 BB9 B 16 ? BB9 B 16 . ? 1_555 ? 149 CC1 28 DHA B 17 ? DHA B 17 . ? 1_555 ? 150 CC1 28 DHA B 18 ? DHA B 18 . ? 1_555 ? 151 CC1 28 NH2 B 19 ? NH2 B 19 . ? 1_555 ? 152 CC1 28 DMF L . ? DMF B 102 . ? 1_555 ? 153 CC1 28 DMF M . ? DMF B 103 . ? 1_555 ? 154 CC1 28 DMF O . ? DMF B 105 . ? 1_555 ? 155 CC2 29 QUA A 1 ? QUA A 1 . ? 1_556 ? 156 CC2 29 ILE A 2 ? ILE A 2 . ? 1_656 ? 157 CC2 29 TS9 A 11 ? TS9 A 11 . ? 1_656 ? 158 CC2 29 BB9 A 12 ? BB9 A 12 . ? 1_656 ? 159 CC2 29 THR A 13 ? THR A 13 . ? 1_656 ? 160 CC2 29 MH6 A 15 ? MH6 A 15 . ? 1_555 ? 161 CC2 29 BB9 A 16 ? BB9 A 16 . ? 1_555 ? 162 CC2 29 DHA A 17 ? DHA A 17 . ? 1_555 ? 163 CC2 29 DHA A 18 ? DHA A 18 . ? 1_555 ? 164 CC2 29 NH2 A 19 ? NH2 A 19 . ? 1_555 ? 165 CC2 29 DMF C . ? DMF A 101 . ? 1_656 ? 166 CC2 29 DMF D . ? DMF A 102 . ? 1_545 ? 167 CC2 29 DMF D . ? DMF A 102 . ? 1_555 ? 168 CC2 29 ETZ E . ? ETZ A 103 . ? 1_555 ? 169 CC2 29 ETZ E . ? ETZ A 103 . ? 1_565 ? 170 CC2 29 ETZ I . ? ETZ A 107 . ? 1_555 ? 171 CC2 29 DMF J . ? DMF A 108 . ? 1_555 ? 172 CC2 29 HOH Q . ? HOH A 201 . ? 1_656 ? 173 CC2 29 HOH Q . ? HOH A 202 . ? 1_656 ? 174 CC2 29 QUA B 1 ? QUA B 1 . ? 1_555 ? 175 CC2 29 NH2 B 19 ? NH2 B 19 . ? 1_555 ? 176 CC2 29 NH2 B 19 ? NH2 B 19 . ? 1_565 ? 177 CC2 29 DMF K . ? DMF B 101 . ? 1_555 ? 178 CC2 29 DMF L . ? DMF B 102 . ? 1_555 ? 179 CC2 29 DMF M . ? DMF B 103 . ? 1_555 ? 180 CC2 29 DMF N . ? DMF B 104 . ? 1_555 ? 181 CC2 29 DMF N . ? DMF B 104 . ? 1_565 ? 182 CC2 29 DMF O . ? DMF B 105 . ? 1_555 ? 183 CC2 29 ETZ P . ? ETZ B 106 . ? 1_565 ? # _database_PDB_matrix.entry_id 4HP2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4HP2 _atom_sites.fract_transf_matrix[1][1] 0.046742 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.013801 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.043725 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.045772 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 QUA 1 1 1 QUA QUA A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 DHA 4 4 4 DHA DHA A . n A 1 5 ALA 5 5 5 ALA ALA A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 BB9 7 7 7 BB9 BB9 A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 DBU 9 9 9 DBU DBU A . n A 1 10 DCY 10 10 10 DCY DCY A . n A 1 11 TS9 11 11 11 TS9 TS9 A . n A 1 12 BB9 12 12 12 BB9 BB9 A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 BB9 14 14 14 BB9 BB9 A . n A 1 15 MH6 15 15 15 MH6 MH6 A . n A 1 16 BB9 16 16 16 BB9 BB9 A . n A 1 17 DHA 17 17 17 DHA DHA A . n A 1 18 DHA 18 18 18 DHA DHA A . n A 1 19 NH2 19 19 19 NH2 NH2 A . n B 1 1 QUA 1 1 1 QUA QUA B . n B 1 2 ILE 2 2 2 ILE ILE B . n B 1 3 ALA 3 3 3 ALA ALA B . n B 1 4 DHA 4 4 4 DHA DHA B . n B 1 5 ALA 5 5 5 ALA ALA B . n B 1 6 SER 6 6 6 SER SER B . n B 1 7 BB9 7 7 7 BB9 BB9 B . n B 1 8 THR 8 8 8 THR THR B . n B 1 9 DBU 9 9 9 DBU DBU B . n B 1 10 DCY 10 10 10 DCY DCY B . n B 1 11 TS9 11 11 11 TS9 TS9 B . n B 1 12 BB9 12 12 12 BB9 BB9 B . n B 1 13 THR 13 13 13 THR THR B . n B 1 14 BB9 14 14 14 BB9 BB9 B . n B 1 15 MH6 15 15 15 MH6 MH6 B . n B 1 16 BB9 16 16 16 BB9 BB9 B . n B 1 17 DHA 17 17 17 DHA DHA B . n B 1 18 DHA 18 18 18 DHA DHA B . n B 1 19 NH2 19 19 19 NH2 NH2 B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DMF 1 101 42 DMF DMF A . D 2 DMF 1 102 49 DMF DMF A . E 3 ETZ 1 103 51 ETZ ETO A . F 3 ETZ 1 104 52 ETZ ETO A . G 3 ETZ 1 105 53 ETZ ETO A . H 3 ETZ 1 106 54 ETZ ETO A . I 3 ETZ 1 107 55 ETZ ETO A . J 2 DMF 1 108 45 DMF DMF A . K 2 DMF 1 101 40 DMF DMF B . L 2 DMF 1 102 41 DMF DMF B . M 2 DMF 1 103 43 DMF DMF B . N 2 DMF 1 104 44 DMF DMF B . O 2 DMF 1 105 47 DMF DMF B . P 3 ETZ 1 106 50 ETZ ETO B . Q 4 HOH 1 201 60 HOH HOH A . Q 4 HOH 2 202 60 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_000223 _pdbx_molecule_features.name THIOSTREPTON _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;Thiostrepton is a hetrocyclic thiopeptide belonging to the thiocillin family, consisting of four thiazole, one thiozoline and one piperideine rings. A modified quinoline linked to main-chain residue 1 and side-chain of residue 12. Post translational maturation of thiazole and oxazole containing antibiotics involves the enzymic condensation of a Cys or Ser with the alpha-carbonyl of the preceding amino acid to form a thioether or ether bond, then dehydration to form a double bond with the alpha-amino nitrogen. Thiazoline or oxazoline ring are dehydrogenated to form thiazole or oxazole rings. the pyridinyl involves the cross-linking of a Ser and a Cys-Ser pair usually separated by 7 or 8 residues along the peptide chain. The Ser residues are dehydrated to didehydroalanines, then bonded between their beta carbons. The alpha carbonyl of the Cys condenses with alpha carbon of the first Ser to form a pyridinyl ring. The ring may be mutiply dehydrogenated to form a pyridine ring with loss of the amino nitrogen of the first Ser. The amidation of Ser-17 probably does not occur by the same mechanism, oxidative cleavage of glycine, as in eukaryotes. ; # loop_ _pdbx_molecule.instance_id _pdbx_molecule.prd_id _pdbx_molecule.asym_id 1 PRD_000223 B 2 PRD_000223 A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DHA 4 A DHA 4 ? SER '2-AMINO-ACRYLIC ACID' 2 A BB9 7 A BB9 7 ? CYS ? 3 A DBU 9 A DBU 9 ? THR '(2Z)-2-AMINOBUT-2-ENOIC ACID' 4 A TS9 11 A TS9 11 ? ILE ? 5 A BB9 12 A BB9 12 ? CYS ? 6 A BB9 14 A BB9 14 ? CYS ? 7 A MH6 15 A MH6 15 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 8 A BB9 16 A BB9 16 ? CYS ? 9 A DHA 17 A DHA 17 ? SER '2-AMINO-ACRYLIC ACID' 10 A DHA 18 A DHA 18 ? SER '2-AMINO-ACRYLIC ACID' 11 B DHA 4 B DHA 4 ? SER '2-AMINO-ACRYLIC ACID' 12 B BB9 7 B BB9 7 ? CYS ? 13 B DBU 9 B DBU 9 ? THR '(2Z)-2-AMINOBUT-2-ENOIC ACID' 14 B TS9 11 B TS9 11 ? ILE ? 15 B BB9 12 B BB9 12 ? CYS ? 16 B BB9 14 B BB9 14 ? CYS ? 17 B MH6 15 B MH6 15 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 18 B BB9 16 B BB9 16 ? CYS ? 19 B DHA 17 B DHA 17 ? SER '2-AMINO-ACRYLIC ACID' 20 B DHA 18 B DHA 18 ? SER '2-AMINO-ACRYLIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-10-02 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2018-04-04 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Refinement description' 2 3 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' software 2 3 'Structure model' diffrn_detector 3 3 'Structure model' diffrn_source # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_diffrn_detector.detector' 2 3 'Structure model' '_diffrn_detector.type' 3 3 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 4 3 'Structure model' '_diffrn_source.type' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL refinement . ? 1 ? ? ? ? XDS 'data reduction' . ? 2 ? ? ? ? XDS 'data scaling' . ? 3 ? ? ? ? # _pdbx_entry_details.entry_id 4HP2 _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;A MODIFIED QUINOLINE QUA LINKED TO THE MAIN-CHAIN OF ILE 2 AND THE SIDE-CHAIN OF THR 13. BB9 14 INCLUDES HYDROGEN ATOM H6, THE DEHYDROPIPERIDINE CORE HYDROGEN POSITION AT THE SIX MEMBER RING SYSTEM AMONG SER 6, BB9 14 AND MH6 15. ; # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C B TS9 11 ? ? SG B BB9 12 ? ? 1.72 2 1 C A TS9 11 ? ? SG A BB9 12 ? ? 1.72 3 1 C A SER 6 ? ? SG A BB9 7 ? ? 1.74 4 1 C A DBU 9 ? ? SG A DCY 10 ? ? 1.77 5 1 C B DBU 9 ? ? SG B DCY 10 ? ? 1.78 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C A ALA 5 ? ? N A SER 6 ? D 1.482 1.336 0.146 0.023 Y 2 1 N A THR 13 ? D CA A THR 13 ? D 1.140 1.459 -0.319 0.020 N 3 1 C A BB9 14 ? C N A MH6 15 ? C 1.483 1.336 0.147 0.023 Y 4 1 C A BB9 16 ? D N A DHA 17 ? D 1.515 1.336 0.179 0.023 Y 5 1 C B BB9 14 ? A N B MH6 15 ? A 1.475 1.336 0.139 0.023 Y 6 1 C B BB9 14 ? B N B MH6 15 ? B 1.503 1.336 0.167 0.023 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A THR 13 ? D CB A THR 13 ? D CG2 A THR 13 ? D 130.16 112.40 17.76 1.40 N 2 1 O A BB9 16 ? D C A BB9 16 ? D N A DHA 17 ? D 109.63 122.70 -13.07 1.60 Y 3 1 O A DHA 18 ? D C A DHA 18 ? D N A NH2 19 ? D 134.44 122.70 11.74 1.60 Y 4 1 C B THR 13 ? B N B BB9 14 ? B CA B BB9 14 ? B 104.78 121.70 -16.92 2.50 Y 5 1 C B MH6 15 ? B N B BB9 16 ? B CA B BB9 16 ? B 103.15 121.70 -18.55 2.50 Y 6 1 CA B BB9 16 ? B C B BB9 16 ? B N B DHA 17 ? B 98.34 117.20 -18.86 2.20 Y 7 1 O B BB9 16 ? B C B BB9 16 ? B N B DHA 17 ? B 133.37 122.70 10.67 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 6 ? C 70.39 76.83 2 1 SER A 6 ? D 63.26 90.67 3 1 DCY A 10 ? ? -147.18 -30.85 4 1 TS9 A 11 ? ? -90.27 -69.90 5 1 SER B 6 ? A 66.33 77.88 6 1 SER B 6 ? B 56.52 77.17 7 1 DCY B 10 ? ? -146.89 -34.36 8 1 TS9 B 11 ? ? -82.61 -72.69 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 BB9 B 14 ? A MH6 B 15 ? A 146.21 2 1 BB9 B 14 ? B MH6 B 15 ? B 148.97 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A SER 6 ? OG ? A SER 6 OG 2 1 Y 1 B SER 6 ? OG ? B SER 6 OG # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 DIMETHYLFORMAMIDE DMF 3 'diethyl ether' ETZ 4 water HOH #