data_4HP7
# 
_entry.id   4HP7 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.387 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   4HP7         pdb_00004hp7 10.2210/pdb4hp7/pdb 
NDB   NA2103       ?            ?                   
RCSB  RCSB075746   ?            ?                   
WWPDB D_1000075746 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2013-10-23 
2 'Structure model' 1 1 2022-03-23 
3 'Structure model' 1 2 2024-02-28 
4 'Structure model' 1 3 2024-03-13 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1 2 'Structure model' 'Data collection'        
2 2 'Structure model' 'Database references'    
3 2 'Structure model' 'Derived calculations'   
4 2 'Structure model' 'Refinement description' 
5 3 'Structure model' 'Data collection'        
6 4 'Structure model' 'Source and taxonomy'    
7 4 'Structure model' 'Structure summary'      
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1  2 'Structure model' chem_comp             
2  2 'Structure model' database_2            
3  2 'Structure model' pdbx_struct_assembly  
4  2 'Structure model' pdbx_struct_oper_list 
5  2 'Structure model' software              
6  2 'Structure model' struct_conn           
7  3 'Structure model' chem_comp_atom        
8  3 'Structure model' chem_comp_bond        
9  4 'Structure model' entity                
10 4 'Structure model' pdbx_entity_src_syn   
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  2 'Structure model' '_chem_comp.type'                     
2  2 'Structure model' '_database_2.pdbx_DOI'                
3  2 'Structure model' '_database_2.pdbx_database_accession' 
4  2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
5  2 'Structure model' '_struct_conn.ptnr1_auth_comp_id'     
6  2 'Structure model' '_struct_conn.ptnr1_auth_seq_id'      
7  2 'Structure model' '_struct_conn.ptnr1_label_asym_id'    
8  2 'Structure model' '_struct_conn.ptnr1_label_atom_id'    
9  2 'Structure model' '_struct_conn.ptnr1_label_comp_id'    
10 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id'     
11 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id'      
12 2 'Structure model' '_struct_conn.ptnr2_label_asym_id'    
13 2 'Structure model' '_struct_conn.ptnr2_label_atom_id'    
14 2 'Structure model' '_struct_conn.ptnr2_label_comp_id'    
15 4 'Structure model' '_entity.details'                     
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        4HP7 
_pdbx_database_status.recvd_initial_deposition_date   2012-10-23 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.status_code_sf                  REL 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.SG_entry                        ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          3C2J 
_pdbx_database_related.details        
'Crystal structure analysis of trioxacarcin A covalently bound to GUANINE excised from d(AACCGGTT)' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Smaltz, D.J.' 1 
'Magauer, T.'  2 
'Proepper, K.' 3 
'Dittrich, B.' 4 
'Myers, A.G.'  5 
# 
_citation.id                        primary 
_citation.title                     'Trioxacarcin D517' 
_citation.journal_abbrev            'TO BE PUBLISHED' 
_citation.journal_volume            ? 
_citation.page_first                ? 
_citation.page_last                 ? 
_citation.year                      ? 
_citation.journal_id_ASTM           ? 
_citation.country                   ? 
_citation.journal_id_ISSN           ? 
_citation.journal_id_CSD            0353 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   ? 
_citation.pdbx_database_id_DOI      ? 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Smaltz, D.J.' 1 ? 
primary 'Magauer, T.'  2 ? 
primary 'Proepper, K.' 3 ? 
primary 'Dittrich, B.' 4 ? 
primary 'Myers, A.G.'  5 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 non-polymer syn 'Trioxacarcin A analogue, bound form' 660.662 4 ? ? ? 'synthetic source form the laboratory of Andrew G. Myers' 
2 non-polymer syn GUANINE                               151.126 4 ? ? ? ?                                                         
3 non-polymer syn 'DIMETHYL SULFOXIDE'                  78.133  3 ? ? ? ?                                                         
4 water       nat water                                 18.015  7 ? ? ? ?                                                         
# 
loop_
_pdbx_entity_nonpoly.entity_id 
_pdbx_entity_nonpoly.name 
_pdbx_entity_nonpoly.comp_id 
1 'Trioxacarcin A analogue, bound form' 18Y 
2 GUANINE                               GUN 
3 'DIMETHYL SULFOXIDE'                  DMS 
4 water                                 HOH 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
18Y non-polymer . 'Trioxacarcin A analogue, bound form' 
;(1S,2R,3aS,4S,13aS)-2-(dimethoxymethyl)-1,12-dihydroxy-7-methoxy-1,5-dimethyl-11-oxo-1,2,3a,4,8,9,10,11-octahydro-13aH-2,4-epoxyfuro[3,2-b]naphtho[2,3-h]chromen-13a-yl 4-C-acetyl-2,6-dideoxy-alpha-L-xylo-hexopyranoside
;
'C33 H40 O14' 660.662 
DMS non-polymer . 'DIMETHYL SULFOXIDE'                  ? 'C2 H6 O S'   78.133  
GUN non-polymer . GUANINE                               ? 'C5 H5 N5 O'  151.126 
HOH non-polymer . WATER                                 ? 'H2 O'        18.015  
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
A 1 18Y 1 101 102 18Y 18Y A . 
B 2 GUN 1 102 101 GUN GUN A . 
C 1 18Y 1 101 103 18Y 18Y B . 
D 2 GUN 1 102 101 GUN GUN B . 
E 1 18Y 1 101 104 18Y 18Y C . 
F 2 GUN 1 102 101 GUN GUN C . 
G 1 18Y 1 101 105 18Y 18Y D . 
H 2 GUN 1 102 101 GUN GUN D . 
I 3 DMS 1 106 106 DMS DMS C . 
J 3 DMS 1 107 107 DMS DMS C . 
K 3 DMS 1 108 108 DMS DMS D . 
L 4 HOH 1 201 201 HOH HOH D . 
L 4 HOH 2 202 202 HOH HOH D . 
L 4 HOH 3 203 203 HOH HOH D . 
L 4 HOH 4 204 204 HOH HOH D . 
L 4 HOH 5 205 205 HOH HOH D . 
L 4 HOH 6 206 206 HOH HOH D . 
L 4 HOH 7 207 207 HOH HOH D . 
# 
loop_
_pdbx_unobs_or_zero_occ_atoms.id 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id 
1 1 N 1 A 18Y 101 ? C28 ? A 18Y 1 C28 
2 1 N 1 A 18Y 101 ? O16 ? A 18Y 1 O16 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
SHELXL refinement       2012 ? 1 
XDS    'data reduction' .    ? 2 
XDS    'data scaling'   .    ? 3 
# 
_cell.entry_id           4HP7 
_cell.length_a           24.086 
_cell.length_b           9.826 
_cell.length_c           35.093 
_cell.angle_alpha        90.00 
_cell.angle_beta         92.32 
_cell.angle_gamma        90.00 
_cell.Z_PDB              8 
_cell.pdbx_unique_axis   ? 
_cell.length_a_esd       ? 
_cell.length_b_esd       ? 
_cell.length_c_esd       ? 
_cell.angle_alpha_esd    ? 
_cell.angle_beta_esd     ? 
_cell.angle_gamma_esd    ? 
# 
_symmetry.entry_id                         4HP7 
_symmetry.space_group_name_H-M             'P 1 21 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                4 
_symmetry.space_group_name_Hall            ? 
# 
_exptl.entry_id          4HP7 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   1 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      3.45 
_exptl_crystal.density_percent_sol   64.40 
_exptl_crystal.description           ? 
_exptl_crystal.F_000                 ? 
_exptl_crystal.preparation           ? 
# 
_exptl_crystal_grow.crystal_id      1 
_exptl_crystal_grow.method          'VAPOR DIFFUSION, HANGING DROP' 
_exptl_crystal_grow.temp            310 
_exptl_crystal_grow.temp_details    ? 
_exptl_crystal_grow.pH              ? 
_exptl_crystal_grow.pdbx_details    
;The solution in the reservoir contained tri-ammonium citrate (pH  7.0) and 30% v/v DMSO. The DNA-drug solution 2.5  mM DNA (single-strand concentration), 2.8mM trioxacarcin A D5, VAPOR DIFFUSION, HANGING DROP, temperature 310K
;
_exptl_crystal_grow.pdbx_pH_range   ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100.0 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               PIXEL 
_diffrn_detector.type                   'DECTRIS PILATUS 6M' 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   0.9 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'SLS BEAMLINE X10SA' 
_diffrn_source.pdbx_synchrotron_site       SLS 
_diffrn_source.pdbx_synchrotron_beamline   X10SA 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        0.9 
# 
_reflns.entry_id                     4HP7 
_reflns.observed_criterion_sigma_I   ? 
_reflns.observed_criterion_sigma_F   ? 
_reflns.d_resolution_low             40.000 
_reflns.d_resolution_high            1.09 
_reflns.number_obs                   ? 
_reflns.number_all                   7037 
_reflns.percent_possible_obs         96.6 
_reflns.pdbx_Rmerge_I_obs            0.0995 
_reflns.pdbx_Rsym_value              ? 
_reflns.pdbx_netI_over_sigmaI        6.28 
_reflns.B_iso_Wilson_estimate        ? 
_reflns.pdbx_redundancy              3.14 
_reflns.R_free_details               ? 
_reflns.limit_h_max                  ? 
_reflns.limit_h_min                  ? 
_reflns.limit_k_max                  ? 
_reflns.limit_k_min                  ? 
_reflns.limit_l_max                  ? 
_reflns.limit_l_min                  ? 
_reflns.observed_criterion_F_max     ? 
_reflns.observed_criterion_F_min     ? 
_reflns.pdbx_chi_squared             ? 
_reflns.pdbx_scaling_rejects         ? 
_reflns.pdbx_ordinal                 1 
_reflns.pdbx_diffrn_id               1 
# 
_reflns_shell.d_res_high             1.09 
_reflns_shell.d_res_low              1.11 
_reflns_shell.percent_possible_all   52.9 
_reflns_shell.Rmerge_I_obs           0.4339 
_reflns_shell.pdbx_Rsym_value        ? 
_reflns_shell.meanI_over_sigI_obs    1.36 
_reflns_shell.pdbx_redundancy        1.21 
_reflns_shell.percent_possible_obs   ? 
_reflns_shell.number_unique_all      ? 
_reflns_shell.number_measured_all    ? 
_reflns_shell.number_measured_obs    ? 
_reflns_shell.number_unique_obs      ? 
_reflns_shell.pdbx_chi_squared       ? 
_reflns_shell.pdbx_ordinal           1 
_reflns_shell.pdbx_diffrn_id         1 
# 
_refine.entry_id                                 4HP7 
_refine.ls_number_reflns_obs                     7037 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0.0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             40.000 
_refine.ls_d_res_high                            1.09 
_refine.ls_percent_reflns_obs                    96.6 
_refine.ls_R_factor_obs                          0.1532 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       ? 
_refine.ls_R_factor_R_free                       0.2156 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 10 
_refine.ls_number_reflns_R_free                  1288 
_refine.ls_number_parameters                     2187 
_refine.ls_number_restraints                     2331 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               ? 
_refine.correlation_coeff_Fo_to_Fc_free          ? 
_refine.B_iso_mean                               ? 
_refine.aniso_B[1][1]                            ? 
_refine.aniso_B[2][2]                            ? 
_refine.aniso_B[3][3]                            ? 
_refine.aniso_B[1][2]                            ? 
_refine.aniso_B[1][3]                            ? 
_refine.aniso_B[2][3]                            ? 
_refine.solvent_model_details                    ? 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             ? 
_refine.pdbx_solvent_ion_probe_radii             ? 
_refine.pdbx_solvent_shrinkage_radii             ? 
_refine.pdbx_ls_cross_valid_method               'FREE R' 
_refine.details                                  ? 
_refine.pdbx_starting_model                      ? 
_refine.pdbx_method_to_determine_struct          ? 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       'Engh & Huber' 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       ? 
_refine.pdbx_overall_ESU_R_Free                  ? 
_refine.overall_SU_ML                            ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.overall_SU_B                             ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.B_iso_min                                ? 
_refine.B_iso_max                                ? 
_refine.overall_SU_R_free                        ? 
_refine.ls_wR_factor_R_free                      ? 
_refine.ls_wR_factor_R_work                      ? 
_refine.overall_FOM_free_R_set                   ? 
_refine.overall_FOM_work_R_set                   ? 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_analyze.entry_id                        4HP7 
_refine_analyze.Luzzati_coordinate_error_obs    ? 
_refine_analyze.Luzzati_sigma_a_obs             ? 
_refine_analyze.Luzzati_d_res_low_obs           ? 
_refine_analyze.Luzzati_coordinate_error_free   ? 
_refine_analyze.Luzzati_sigma_a_free            ? 
_refine_analyze.Luzzati_d_res_low_free          ? 
_refine_analyze.number_disordered_residues      3 
_refine_analyze.occupancy_sum_hydrogen          ? 
_refine_analyze.occupancy_sum_non_hydrogen      247.0 
_refine_analyze.pdbx_Luzzati_d_res_high_obs     ? 
_refine_analyze.pdbx_refine_id                  'X-RAY DIFFRACTION' 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   0 
_refine_hist.pdbx_number_atoms_ligand         242 
_refine_hist.number_atoms_solvent             7 
_refine_hist.number_atoms_total               249 
_refine_hist.d_res_high                       1.09 
_refine_hist.d_res_low                        40.000 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_restraint_function 
_refine_ls_restr.pdbx_refine_id 
s_bond_d               0.0285 ? ? ? ? 'X-RAY DIFFRACTION' 
s_angle_d              0.729  ? ? ? ? 'X-RAY DIFFRACTION' 
s_similar_dist         0.159  ? ? ? ? 'X-RAY DIFFRACTION' 
s_from_restr_planes    0.4909 ? ? ? ? 'X-RAY DIFFRACTION' 
s_zero_chiral_vol      0.0    ? ? ? ? 'X-RAY DIFFRACTION' 
s_non_zero_chiral_vol  0.12   ? ? ? ? 'X-RAY DIFFRACTION' 
s_anti_bump_dis_restr  0.0000 ? ? ? ? 'X-RAY DIFFRACTION' 
s_rigid_bond_adp_cmpnt 0.0263 ? ? ? ? 'X-RAY DIFFRACTION' 
s_similar_adp_cmpnt    0.0000 ? ? ? ? 'X-RAY DIFFRACTION' 
s_approx_iso_adps      0.0000 ? ? ? ? 'X-RAY DIFFRACTION' 
# 
_pdbx_refine.pdbx_refine_id                              'X-RAY DIFFRACTION' 
_pdbx_refine.entry_id                                    4HP7 
_pdbx_refine.R_factor_all_no_cutoff                      ? 
_pdbx_refine.R_factor_obs_no_cutoff                      0.1532 
_pdbx_refine.free_R_factor_no_cutoff                     0.2156 
_pdbx_refine.free_R_error_no_cutoff                      ? 
_pdbx_refine.free_R_val_test_set_size_perc_no_cutoff     10 
_pdbx_refine.free_R_val_test_set_ct_no_cutoff            1288 
_pdbx_refine.R_factor_all_4sig_cutoff                    ? 
_pdbx_refine.R_factor_obs_4sig_cutoff                    0.1211 
_pdbx_refine.free_R_factor_4sig_cutoff                   0.1818 
_pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff   10 
_pdbx_refine.free_R_val_test_set_ct_4sig_cutoff          871 
_pdbx_refine.number_reflns_obs_4sig_cutoff               7634 
# 
_database_PDB_matrix.entry_id          4HP7 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.000000 
_database_PDB_matrix.origx_vector[2]   0.000000 
_database_PDB_matrix.origx_vector[3]   0.000000 
# 
_struct.entry_id                  4HP7 
_struct.title                     'Trioxacarcin D517 as a product of guanine robbery from d(AACCGGTT)' 
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        4HP7 
_struct_keywords.pdbx_keywords   ANTIBIOTIC 
_struct_keywords.text            'Aminoglycosides, Anti-Bacterial Agents, Antitumor Agents, DNA, ANTIBIOTIC' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 1 ? 
D N N 2 ? 
E N N 1 ? 
F N N 2 ? 
G N N 1 ? 
H N N 2 ? 
I N N 3 ? 
J N N 3 ? 
K N N 3 ? 
L N N 4 ? 
# 
_struct_ref.id                         1 
_struct_ref.db_name                    PDB 
_struct_ref.db_code                    4HP7 
_struct_ref.pdbx_db_accession          4HP7 
_struct_ref.entity_id                  1 
_struct_ref.pdbx_align_begin           ? 
_struct_ref.pdbx_seq_one_letter_code   ? 
_struct_ref.pdbx_db_isoform            ? 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   monomeric 
_pdbx_struct_assembly.oligomeric_count     1 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G,H,I,J,K,L 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id        1 
_struct_biol.details   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1 covale none ? A 18Y . C17 ? ? ? 1_555 B GUN . N7 ? ? A 18Y 101 A GUN 102 1_555 ? ? ? ? ? ? ? 1.518 ? ? 
covale2 covale none ? C 18Y . C17 ? ? ? 1_555 D GUN . N7 ? ? B 18Y 101 B GUN 102 1_555 ? ? ? ? ? ? ? 1.457 ? ? 
covale3 covale none ? E 18Y . C17 ? ? ? 1_555 F GUN . N7 ? ? C 18Y 101 C GUN 102 1_555 ? ? ? ? ? ? ? 1.462 ? ? 
covale4 covale none ? G 18Y . C17 ? ? ? 1_555 H GUN . N7 ? ? D 18Y 101 D GUN 102 1_555 ? ? ? ? ? ? ? 1.436 ? ? 
# 
_struct_conn_type.id          covale 
_struct_conn_type.criteria    ? 
_struct_conn_type.reference   ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
18Y C3     C N N 1   
18Y C5     C Y N 2   
18Y O1     O N N 3   
18Y "C7'"  C N N 4   
18Y "O7'"  O N N 5   
18Y "C8'"  C N N 6   
18Y C1     C N N 7   
18Y C2     C N N 8   
18Y C4     C N N 9   
18Y C6     C Y N 10  
18Y C7     C Y N 11  
18Y O8     O N N 12  
18Y C8     C Y N 13  
18Y O9     O N N 14  
18Y C9     C Y N 15  
18Y O10    O N N 16  
18Y C19    C Y N 17  
18Y O11    O N N 18  
18Y C11    C N S 19  
18Y O12    O N N 20  
18Y C12    C N S 21  
18Y O13    O N N 22  
18Y C13    C N S 23  
18Y O14    O N N 24  
18Y C14    C N S 25  
18Y C15    C N R 26  
18Y C25    C N N 27  
18Y "O1'"  O N N 28  
18Y "C1'"  C N S 29  
18Y "C2'"  C N N 30  
18Y "O3'"  O N N 31  
18Y "C3'"  C N R 32  
18Y "O4'"  O N N 33  
18Y "C4'"  C N S 34  
18Y "C5'"  C N S 35  
18Y "C6'"  C N N 36  
18Y C20    C Y N 37  
18Y C21    C Y N 38  
18Y C18    C N N 39  
18Y C22    C Y N 40  
18Y C23    C Y N 41  
18Y C24    C N N 42  
18Y O26    O N N 43  
18Y C27    C N N 44  
18Y C28    C N N 45  
18Y C17    C N N 46  
18Y O16    O N N 47  
18Y H3A    H N N 48  
18Y H3B    H N N 49  
18Y H5     H N N 50  
18Y "H81'" H N N 51  
18Y "H82'" H N N 52  
18Y "H83'" H N N 53  
18Y H2B    H N N 54  
18Y H2A    H N N 55  
18Y H4A    H N N 56  
18Y H4B    H N N 57  
18Y H9     H N N 58  
18Y H11    H N N 59  
18Y H12    H N N 60  
18Y H1     H N N 61  
18Y H16    H N N 62  
18Y "H1'"  H N N 63  
18Y "H2'"  H N N 64  
18Y H2     H N N 65  
18Y HO3    H N N 66  
18Y "H3'"  H N N 67  
18Y "H4'"  H N N 68  
18Y "H5'"  H N N 69  
18Y "H61'" H N N 70  
18Y "H62'" H N N 71  
18Y "H63'" H N N 72  
18Y H61A   H N N 73  
18Y H63A   H N N 74  
18Y H62A   H N N 75  
18Y H111   H N N 76  
18Y H112   H N N 77  
18Y H113   H N N 78  
18Y H62B   H N N 79  
18Y H63B   H N N 80  
18Y H61B   H N N 81  
18Y H63C   H N N 82  
18Y H61C   H N N 83  
18Y H62C   H N N 84  
18Y H171   H N N 85  
18Y H172   H N N 86  
18Y H3     H N N 87  
DMS S      S N N 88  
DMS O      O N N 89  
DMS C1     C N N 90  
DMS C2     C N N 91  
DMS H11    H N N 92  
DMS H12    H N N 93  
DMS H13    H N N 94  
DMS H21    H N N 95  
DMS H22    H N N 96  
DMS H23    H N N 97  
GUN N9     N Y N 98  
GUN C8     C Y N 99  
GUN N7     N Y N 100 
GUN C5     C Y N 101 
GUN C6     C N N 102 
GUN O6     O N N 103 
GUN N1     N N N 104 
GUN C2     C N N 105 
GUN N2     N N N 106 
GUN N3     N N N 107 
GUN C4     C Y N 108 
GUN HN9    H N N 109 
GUN H8     H N N 110 
GUN HN1    H N N 111 
GUN HN21   H N N 112 
GUN HN22   H N N 113 
HOH O      O N N 114 
HOH H1     H N N 115 
HOH H2     H N N 116 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
18Y C3    C4     sing N N 1   
18Y C3    C2     sing N N 2   
18Y C4    C21    sing N N 3   
18Y C2    C1     sing N N 4   
18Y O10   C19    sing N N 5   
18Y O10   C24    sing N N 6   
18Y C21   C19    doub Y N 7   
18Y C21   C20    sing Y N 8   
18Y C19   C23    sing Y N 9   
18Y C1    C20    sing N N 10  
18Y C1    O1     doub N N 11  
18Y C20   C9     doub Y N 12  
18Y C23   C5     doub Y N 13  
18Y C23   C22    sing Y N 14  
18Y C5    C6     sing Y N 15  
18Y C9    C22    sing Y N 16  
18Y C9    O9     sing N N 17  
18Y "C6'" "C5'"  sing N N 18  
18Y C22   C8     doub Y N 19  
18Y "O4'" "C4'"  sing N N 20  
18Y C6    C18    sing N N 21  
18Y C6    C7     doub Y N 22  
18Y "O1'" "C5'"  sing N N 23  
18Y "O1'" "C1'"  sing N N 24  
18Y C8    C7     sing Y N 25  
18Y C8    O8     sing N N 26  
18Y "C5'" "C4'"  sing N N 27  
18Y C7    C11    sing N N 28  
18Y "C4'" "C7'"  sing N N 29  
18Y "C4'" "C3'"  sing N N 30  
18Y "C1'" "C2'"  sing N N 31  
18Y "C1'" O13    sing N N 32  
18Y O8    C13    sing N N 33  
18Y "C8'" "C7'"  sing N N 34  
18Y C11   C12    sing N N 35  
18Y C11   O11    sing N N 36  
18Y "C2'" "C3'"  sing N N 37  
18Y "C7'" "O7'"  doub N N 38  
18Y C12   C13    sing N N 39  
18Y C12   O12    sing N N 40  
18Y "C3'" "O3'"  sing N N 41  
18Y C13   O13    sing N N 42  
18Y C13   C14    sing N N 43  
18Y O12   C15    sing N N 44  
18Y O11   C15    sing N N 45  
18Y C14   C15    sing N N 46  
18Y C14   C17    sing N N 47  
18Y C14   O14    sing N N 48  
18Y C15   C25    sing N N 49  
18Y C25   O16    sing N N 50  
18Y C25   O26    sing N N 51  
18Y C28   O16    sing N N 52  
18Y O26   C27    sing N N 53  
18Y C3    H3A    sing N N 54  
18Y C3    H3B    sing N N 55  
18Y C5    H5     sing N N 56  
18Y "C8'" "H81'" sing N N 57  
18Y "C8'" "H82'" sing N N 58  
18Y "C8'" "H83'" sing N N 59  
18Y C2    H2B    sing N N 60  
18Y C2    H2A    sing N N 61  
18Y C4    H4A    sing N N 62  
18Y C4    H4B    sing N N 63  
18Y O9    H9     sing N N 64  
18Y C11   H11    sing N N 65  
18Y C12   H12    sing N N 66  
18Y O14   H1     sing N N 67  
18Y C25   H16    sing N N 68  
18Y "C1'" "H1'"  sing N N 69  
18Y "C2'" "H2'"  sing N N 70  
18Y "C2'" H2     sing N N 71  
18Y "O3'" HO3    sing N N 72  
18Y "C3'" "H3'"  sing N N 73  
18Y "O4'" "H4'"  sing N N 74  
18Y "C5'" "H5'"  sing N N 75  
18Y "C6'" "H61'" sing N N 76  
18Y "C6'" "H62'" sing N N 77  
18Y "C6'" "H63'" sing N N 78  
18Y C18   H61A   sing N N 79  
18Y C18   H63A   sing N N 80  
18Y C18   H62A   sing N N 81  
18Y C24   H111   sing N N 82  
18Y C24   H112   sing N N 83  
18Y C24   H113   sing N N 84  
18Y C27   H62B   sing N N 85  
18Y C27   H63B   sing N N 86  
18Y C27   H61B   sing N N 87  
18Y C28   H63C   sing N N 88  
18Y C28   H61C   sing N N 89  
18Y C28   H62C   sing N N 90  
18Y C17   H171   sing N N 91  
18Y C17   H172   sing N N 92  
18Y C17   H3     sing N N 93  
DMS S     O      doub N N 94  
DMS S     C1     sing N N 95  
DMS S     C2     sing N N 96  
DMS C1    H11    sing N N 97  
DMS C1    H12    sing N N 98  
DMS C1    H13    sing N N 99  
DMS C2    H21    sing N N 100 
DMS C2    H22    sing N N 101 
DMS C2    H23    sing N N 102 
GUN N9    C8     sing Y N 103 
GUN N9    C4     sing Y N 104 
GUN N9    HN9    sing N N 105 
GUN C8    N7     doub Y N 106 
GUN C8    H8     sing N N 107 
GUN N7    C5     sing Y N 108 
GUN C5    C6     sing N N 109 
GUN C5    C4     doub Y N 110 
GUN C6    O6     doub N N 111 
GUN C6    N1     sing N N 112 
GUN N1    C2     sing N N 113 
GUN N1    HN1    sing N N 114 
GUN C2    N2     sing N N 115 
GUN C2    N3     doub N N 116 
GUN N2    HN21   sing N N 117 
GUN N2    HN22   sing N N 118 
GUN N3    C4     sing N N 119 
HOH O     H1     sing N N 120 
HOH O     H2     sing N N 121 
# 
_atom_sites.entry_id                    4HP7 
_atom_sites.fract_transf_matrix[1][1]   0.041517 
_atom_sites.fract_transf_matrix[1][2]   0.000000 
_atom_sites.fract_transf_matrix[1][3]   0.001678 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.101771 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.028519 
_atom_sites.fract_transf_vector[1]      0.000000 
_atom_sites.fract_transf_vector[2]      0.000000 
_atom_sites.fract_transf_vector[3]      0.000000 
# 
loop_
_atom_type.symbol 
C 
H 
N 
O 
S 
# 
loop_