HEADER IMMUNE SYSTEM/VIRAL PROTEIN 24-OCT-12 4HPO TITLE CRYSTAL STRUCTURE OF RV144-ELICITED ANTIBODY CH58 IN COMPLEX WITH V2 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CH58 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: CH58 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENVELOPE GLYCOPROTEIN GP160; COMPND 11 CHAIN: P; COMPND 12 FRAGMENT: UNP RESIDUES 160-178; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 12 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676; SOURCE 19 OTHER_DETAILS: PEPTIDE FROM HIV-1 V2 REGION KEYWDS IMMUNOGLOBULIN, IMMUNE SYSTEM-VIRAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.S.MCLELLAN,J.GORMAN,B.F.HAYNES,P.D.KWONG REVDAT 3 20-SEP-23 4HPO 1 HETSYN REVDAT 2 29-JUL-20 4HPO 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 06-FEB-13 4HPO 0 JRNL AUTH H.X.LIAO,M.BONSIGNORI,S.M.ALAM,J.S.MCLELLAN,G.D.TOMARAS, JRNL AUTH 2 M.A.MOODY,D.M.KOZINK,K.K.HWANG,X.CHEN,C.Y.TSAO,P.LIU,X.LU, JRNL AUTH 3 R.J.PARKS,D.C.MONTEFIORI,G.FERRARI,J.POLLARA,M.RAO, JRNL AUTH 4 K.K.PEACHMAN,S.SANTRA,N.L.LETVIN,N.KARASAVVAS,Z.Y.YANG, JRNL AUTH 5 K.DAI,M.PANCERA,J.GORMAN,K.WIEHE,N.I.NICELY,S.RERKS-NGARM, JRNL AUTH 6 S.NITAYAPHAN,J.KAEWKUNGWAL,P.PITISUTTITHUM,J.TARTAGLIA, JRNL AUTH 7 F.SINANGIL,J.H.KIM,N.L.MICHAEL,T.B.KEPLER,P.D.KWONG, JRNL AUTH 8 J.R.MASCOLA,G.J.NABEL,A.PINTER,S.ZOLLA-PAZNER,B.F.HAYNES JRNL TITL VACCINE INDUCTION OF ANTIBODIES AGAINST A STRUCTURALLY JRNL TITL 2 HETEROGENEOUS SITE OF IMMUNE PRESSURE WITHIN HIV-1 ENVELOPE JRNL TITL 3 PROTEIN VARIABLE REGIONS 1 AND 2. JRNL REF IMMUNITY V. 38 176 2013 JRNL REFN ISSN 1074-7613 JRNL PMID 23313589 JRNL DOI 10.1016/J.IMMUNI.2012.11.011 REMARK 2 REMARK 2 RESOLUTION. 1.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.2 REMARK 3 NUMBER OF REFLECTIONS : 53364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 2654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8090 - 4.5122 0.97 2954 145 0.1537 0.1595 REMARK 3 2 4.5122 - 3.5849 1.00 2961 166 0.1485 0.1757 REMARK 3 3 3.5849 - 3.1327 1.00 2963 167 0.1787 0.2014 REMARK 3 4 3.1327 - 2.8468 1.00 2919 168 0.1967 0.2363 REMARK 3 5 2.8468 - 2.6430 0.99 2963 165 0.2036 0.2187 REMARK 3 6 2.6430 - 2.4873 0.99 2932 144 0.2045 0.2328 REMARK 3 7 2.4873 - 2.3628 0.99 2937 159 0.2014 0.2228 REMARK 3 8 2.3628 - 2.2600 0.99 2933 146 0.2159 0.2441 REMARK 3 9 2.2600 - 2.1731 0.98 2868 147 0.2087 0.2749 REMARK 3 10 2.1731 - 2.0981 0.98 2896 137 0.1932 0.2115 REMARK 3 11 2.0981 - 2.0326 0.97 2881 151 0.1972 0.2206 REMARK 3 12 2.0326 - 1.9745 0.97 2868 147 0.2090 0.2405 REMARK 3 13 1.9745 - 1.9225 0.94 2763 154 0.2292 0.2852 REMARK 3 14 1.9225 - 1.8757 0.88 2599 113 0.2420 0.2543 REMARK 3 15 1.8757 - 1.8330 0.85 2507 129 0.2376 0.2469 REMARK 3 16 1.8330 - 1.7940 0.79 2327 127 0.2373 0.2958 REMARK 3 17 1.7940 - 1.7582 0.71 2080 112 0.2494 0.3347 REMARK 3 18 1.7582 - 1.7250 0.61 1795 92 0.2524 0.2445 REMARK 3 19 1.7250 - 1.6940 0.53 1564 85 0.2612 0.3461 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3534 REMARK 3 ANGLE : 1.105 4813 REMARK 3 CHIRALITY : 0.077 539 REMARK 3 PLANARITY : 0.005 604 REMARK 3 DIHEDRAL : 14.758 1265 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3033 6.9915 -20.4873 REMARK 3 T TENSOR REMARK 3 T11: 0.3027 T22: 0.6853 REMARK 3 T33: 0.2582 T12: 0.0348 REMARK 3 T13: -0.0196 T23: 0.1196 REMARK 3 L TENSOR REMARK 3 L11: 3.3913 L22: 1.0888 REMARK 3 L33: 2.6377 L12: 0.0220 REMARK 3 L13: -0.9612 L23: -0.0008 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 1.5186 S13: 0.4250 REMARK 3 S21: -0.2358 S22: 0.0435 S23: 0.1588 REMARK 3 S31: -0.2349 S32: -0.5455 S33: 0.0129 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 125:213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.5119 6.4228 -3.4022 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.3602 REMARK 3 T33: 0.5055 T12: 0.0070 REMARK 3 T13: 0.0056 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 7.6942 L22: 4.1351 REMARK 3 L33: 3.8808 L12: 1.1303 REMARK 3 L13: 2.1211 L23: 1.0109 REMARK 3 S TENSOR REMARK 3 S11: -0.0710 S12: 1.1424 S13: 0.1301 REMARK 3 S21: 0.0091 S22: 0.1302 S23: 0.4975 REMARK 3 S31: 0.0467 S32: 0.1812 S33: -0.0025 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8200 -1.2705 -0.6103 REMARK 3 T TENSOR REMARK 3 T11: 0.1933 T22: 0.1503 REMARK 3 T33: 0.1673 T12: -0.0041 REMARK 3 T13: 0.0017 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 3.4642 L22: 2.0855 REMARK 3 L33: 1.4297 L12: -0.0368 REMARK 3 L13: -0.3889 L23: 0.4377 REMARK 3 S TENSOR REMARK 3 S11: -0.0221 S12: 0.0234 S13: -0.2229 REMARK 3 S21: 0.0032 S22: -0.0073 S23: 0.0034 REMARK 3 S31: 0.0060 S32: -0.0985 S33: 0.0272 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 113:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -45.6951 -6.9912 1.1493 REMARK 3 T TENSOR REMARK 3 T11: 0.4164 T22: 0.3384 REMARK 3 T33: 1.1598 T12: 0.0256 REMARK 3 T13: -0.1618 T23: -0.1979 REMARK 3 L TENSOR REMARK 3 L11: 1.8361 L22: 1.9711 REMARK 3 L33: 2.2237 L12: 1.2947 REMARK 3 L13: 0.2797 L23: 0.9424 REMARK 3 S TENSOR REMARK 3 S11: 0.3120 S12: 0.3235 S13: -1.5384 REMARK 3 S21: -0.0673 S22: -0.0199 S23: -0.0025 REMARK 3 S31: 0.4788 S32: 0.0883 S33: -0.2957 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN P AND ( RESID 167:181 OR RESID 201:222 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.1518 -2.2914 -18.1328 REMARK 3 T TENSOR REMARK 3 T11: 0.2475 T22: 0.4756 REMARK 3 T33: 0.2768 T12: 0.0154 REMARK 3 T13: 0.0810 T23: -0.1095 REMARK 3 L TENSOR REMARK 3 L11: 5.0965 L22: 8.0313 REMARK 3 L33: 7.8430 L12: 1.9463 REMARK 3 L13: -1.5454 L23: -4.6864 REMARK 3 S TENSOR REMARK 3 S11: -0.0243 S12: 1.0185 S13: -0.1833 REMARK 3 S21: -0.6808 S22: -0.2132 S23: -0.3258 REMARK 3 S31: 0.2523 S32: 0.4956 S33: 0.3366 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI (220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53546 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.694 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 56.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.38700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.880 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3H0T, 3UJJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% (W/V) PEG 8000, 2% (V/V) MPD, 0.1 REMARK 280 M IMIDAZOLE PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 70.29700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.90200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 70.29700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 37.90200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 113 REMARK 465 ALA H 114 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 GLU P 164 REMARK 465 LEU P 165 REMARK 465 ARG P 166 REMARK 465 VAL P 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH L 608 O HOH L 621 1.82 REMARK 500 O HOH L 600 O HOH L 628 2.00 REMARK 500 O HOH H 432 O HOH H 447 2.01 REMARK 500 O HOH L 573 O HOH L 589 2.02 REMARK 500 O HOH L 587 O HOH L 594 2.04 REMARK 500 OH TYR L 172 O HOH L 605 2.04 REMARK 500 O HOH H 318 O HOH H 357 2.07 REMARK 500 O HOH L 601 O HOH L 614 2.07 REMARK 500 O HOH L 595 O HOH L 602 2.09 REMARK 500 O THR L 201 O HOH L 573 2.10 REMARK 500 O HOH H 321 O HOH H 350 2.11 REMARK 500 O HOH L 617 O HOH L 619 2.17 REMARK 500 ND1 HIS L 8 O HOH L 599 2.18 REMARK 500 O HOH L 516 O HOH L 535 2.18 REMARK 500 O HOH L 547 O HOH L 552 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 356 O HOH L 485 2555 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 144 61.61 60.02 REMARK 500 PHE H 146 135.16 -173.55 REMARK 500 ASP L 51 -49.17 75.58 REMARK 500 ASN L 52 22.78 -148.96 REMARK 500 ASP L 60 4.58 -69.27 REMARK 500 SER L 94 -26.95 80.31 REMARK 500 ASP L 151 -105.84 56.05 REMARK 500 PRO L 208 90.88 -62.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HPY RELATED DB: PDB REMARK 900 RELATED ID: 4HQQ RELATED DB: PDB DBREF 4HPO P 164 182 UNP Q9WLG7 Q9WLG7_9HIV1 160 178 DBREF 4HPO H 1 218 PDB 4HPO 4HPO 1 218 DBREF 4HPO L 1 212 PDB 4HPO 4HPO 1 212 SEQRES 1 H 231 GLU VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 231 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 231 TYR ARG PHE THR SER TYR TRP ILE VAL TRP VAL ARG GLN SEQRES 4 H 231 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 231 PRO GLY ASP PHE ASP THR LYS TYR SER PRO SER PHE GLN SEQRES 6 H 231 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 231 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 231 ALA MET TYR TYR CYS ALA ARG LEU GLY GLY ARG TYR TYR SEQRES 9 H 231 HIS ASP SER SER GLY TYR TYR TYR LEU ASP TYR TRP GLY SEQRES 10 H 231 GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR LYS SEQRES 11 H 231 GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 231 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 231 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 231 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 231 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 231 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 231 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 231 LYS ARG VAL GLU PRO LYS SER CYS ASP LYS SEQRES 1 L 216 ASN PHE MET LEU THR GLN PRO HIS SER VAL SER GLU SER SEQRES 2 L 216 PRO GLY LYS THR VAL THR ILE SER CYS THR ARG SER SER SEQRES 3 L 216 GLY SER VAL ALA SER ASP TYR VAL GLN TRP TYR GLN GLN SEQRES 4 L 216 ARG PRO GLY SER ALA PRO THR THR VAL VAL TYR GLU ASP SEQRES 5 L 216 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 216 SER ILE ASP SER SER SER ASN SER ALA SER LEU THR ILE SEQRES 7 L 216 SER GLY LEU LYS THR GLU ASP GLU ALA ASP TYR TYR CYS SEQRES 8 L 216 GLN SER TYR ASP ASN SER SER TRP VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 P 19 GLU LEU ARG ASP LYS LYS GLN LYS VAL HIS ALA LEU PHE SEQRES 2 P 19 TYR LYS LEU ASP ILE VAL MODRES 4HPO ASN L 93 ASN GLYCOSYLATION SITE HET NAG A 1 14 HET FUC A 2 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 4 NAG C8 H15 N O6 FORMUL 4 FUC C6 H12 O5 FORMUL 5 HOH *403(H2 O) HELIX 1 1 ARG H 28 TYR H 32 5 5 HELIX 2 2 LYS H 73 ILE H 75 5 3 HELIX 3 3 LYS H 83 THR H 87 5 5 HELIX 4 4 SER H 156 ALA H 158 5 3 HELIX 5 5 PRO H 185 LEU H 189 5 5 HELIX 6 6 LYS H 201 ASN H 204 5 4 HELIX 7 7 SER L 27B ASP L 31 5 5 HELIX 8 8 SER L 66B SER L 68 5 3 HELIX 9 9 LYS L 79 GLU L 83 5 5 HELIX 10 10 SER L 121 ALA L 127 1 7 HELIX 11 11 THR L 181 HIS L 188 1 8 HELIX 12 12 LYS P 168 TYR P 177 1 10 SHEET 1 A 4 GLN H 3 GLN H 6 0 SHEET 2 A 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 A 4 THR H 77 TRP H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 A 4 THR H 68 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 B 6 GLU H 10 LYS H 12 0 SHEET 2 B 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 B 6 ALA H 88 ARG H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 B 6 ILE H 34 GLN H 39 -1 N GLN H 39 O MET H 89 SHEET 5 B 6 LEU H 45 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 B 6 THR H 57 TYR H 59 -1 O LYS H 58 N ILE H 50 SHEET 1 C 4 GLU H 10 LYS H 12 0 SHEET 2 C 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 C 4 ALA H 88 ARG H 98 -1 N ALA H 88 O VAL H 109 SHEET 4 C 4 TYR H 100F TRP H 103 -1 O TYR H 100H N GLY H 96 SHEET 1 D 4 SER H 120 LEU H 124 0 SHEET 2 D 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 D 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 D 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 E 4 SER H 120 LEU H 124 0 SHEET 2 E 4 ALA H 136 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 E 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 E 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 F 3 THR H 151 TRP H 154 0 SHEET 2 F 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 F 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 G 4 LEU L 4 THR L 5 0 SHEET 2 G 4 VAL L 19 ARG L 25 -1 O THR L 24 N THR L 5 SHEET 3 G 4 SER L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 4 G 4 PHE L 62 ASP L 66A-1 N ASP L 66A O SER L 70 SHEET 1 H 5 SER L 9 GLU L 13 0 SHEET 2 H 5 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 H 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 H 5 GLN L 34 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 H 5 THR L 45 VAL L 48 -1 O VAL L 47 N TRP L 35 SHEET 1 I 4 SER L 9 GLU L 13 0 SHEET 2 I 4 THR L 102 VAL L 106 1 O LYS L 103 N VAL L 11 SHEET 3 I 4 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 I 4 SER L 95 PHE L 98 -1 O SER L 95 N ASP L 92 SHEET 1 J 4 SER L 114 PHE L 118 0 SHEET 2 J 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 J 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 J 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 K 4 SER L 114 PHE L 118 0 SHEET 2 K 4 ALA L 130 PHE L 139 -1 O SER L 137 N SER L 114 SHEET 3 K 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 K 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 L 4 SER L 153 VAL L 155 0 SHEET 2 L 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 L 4 TYR L 191 HIS L 197 -1 O THR L 196 N THR L 145 SHEET 4 L 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 193 1555 1555 2.04 LINK ND2 ASN L 93 C1 NAG A 1 1555 1555 1.44 LINK O6 NAG A 1 C1 FUC A 2 1555 1555 1.25 CISPEP 1 PHE H 146 PRO H 147 0 -4.32 CISPEP 2 GLU H 148 PRO H 149 0 -3.31 CISPEP 3 TYR L 140 PRO L 141 0 -3.49 CRYST1 140.594 75.804 54.688 90.00 111.99 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007113 0.000000 0.002872 0.00000 SCALE2 0.000000 0.013192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019720 0.00000