HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-OCT-12 4HQV TITLE TRNA-GUANINE TRANSGLYCOSYLASE Y106F, C158V, V233G MUTANT IN COMPLEX TITLE 2 WITH QUEUINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE(3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-ZM-Y106F_C158V_V233G KEYWDS SUBSTRATE SPECIFICITY, BACTERIAL TGT, TRANSFERASE, GUANINE, PREQ1, KEYWDS 2 QUEUINE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.BIELA,N.TIDTEN-LUKSCH,A.HEINE,K.REUTER,G.KLEBE REVDAT 3 20-SEP-23 4HQV 1 REMARK SEQADV LINK REVDAT 2 17-JUL-13 4HQV 1 JRNL REVDAT 1 21-NOV-12 4HQV 0 JRNL AUTH I.BIELA,N.TIDTEN-LUKSCH,F.IMMEKUS,S.GLINCA,T.X.NGUYEN, JRNL AUTH 2 H.D.GERBER,A.HEINE,G.KLEBE,K.REUTER JRNL TITL INVESTIGATION OF SPECIFICITY DETERMINANTS IN BACTERIAL JRNL TITL 2 TRNA-GUANINE TRANSGLYCOSYLASE REVEALS QUEUINE, THE SUBSTRATE JRNL TITL 3 OF ITS EUCARYOTIC COUNTERPART, AS INHIBITOR. JRNL REF PLOS ONE V. 8 64240 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23704982 JRNL DOI 10.1371/JOURNAL.PONE.0064240 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.7 REMARK 3 NUMBER OF REFLECTIONS : 42379 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.9030 - 4.0865 0.98 3075 163 0.1573 0.1849 REMARK 3 2 4.0865 - 3.2470 0.99 3029 169 0.1369 0.1634 REMARK 3 3 3.2470 - 2.8375 0.98 3010 154 0.1598 0.1779 REMARK 3 4 2.8375 - 2.5785 0.97 2986 159 0.1614 0.1845 REMARK 3 5 2.5785 - 2.3940 0.96 2917 163 0.1683 0.1994 REMARK 3 6 2.3940 - 2.2530 0.88 2682 134 0.1923 0.2196 REMARK 3 7 2.2530 - 2.1402 0.88 2676 131 0.2352 0.3207 REMARK 3 8 2.1402 - 2.0471 0.96 2947 154 0.1667 0.1981 REMARK 3 9 2.0471 - 1.9684 0.92 2802 155 0.1744 0.2031 REMARK 3 10 1.9684 - 1.9005 0.78 2415 124 0.3057 0.3742 REMARK 3 11 1.9005 - 1.8411 0.64 1940 98 0.2338 0.3048 REMARK 3 12 1.8411 - 1.7885 0.80 2448 135 0.1815 0.2364 REMARK 3 13 1.7885 - 1.7414 0.82 2456 137 0.1837 0.2290 REMARK 3 14 1.7414 - 1.6990 0.81 2504 116 0.1794 0.1925 REMARK 3 15 1.6990 - 1.6600 0.78 2379 121 0.1826 0.2168 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2999 REMARK 3 ANGLE : 1.109 4055 REMARK 3 CHIRALITY : 0.070 427 REMARK 3 PLANARITY : 0.005 538 REMARK 3 DIHEDRAL : 13.191 1112 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7042 6.2142 19.0738 REMARK 3 T TENSOR REMARK 3 T11: 0.0918 T22: 0.0704 REMARK 3 T33: 0.0926 T12: -0.0081 REMARK 3 T13: -0.0003 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0269 L22: 0.4004 REMARK 3 L33: 1.0449 L12: -0.3587 REMARK 3 L13: 0.0378 L23: 0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.0094 S12: -0.0138 S13: 0.1170 REMARK 3 S21: 0.0134 S22: -0.0012 S23: -0.0344 REMARK 3 S31: -0.1133 S32: -0.0516 S33: -0.0153 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4490 13.3802 26.9743 REMARK 3 T TENSOR REMARK 3 T11: 0.1087 T22: 0.0839 REMARK 3 T33: 0.0985 T12: 0.0121 REMARK 3 T13: -0.0109 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.9844 L22: 0.9386 REMARK 3 L33: 1.2676 L12: -0.0101 REMARK 3 L13: -0.2465 L23: 0.4165 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: -0.0570 S13: 0.1291 REMARK 3 S21: 0.0168 S22: 0.0021 S23: -0.0456 REMARK 3 S31: -0.1617 S32: 0.0174 S33: -0.0392 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.8051 6.3704 -0.9762 REMARK 3 T TENSOR REMARK 3 T11: 0.0956 T22: 0.1298 REMARK 3 T33: 0.1041 T12: -0.0019 REMARK 3 T13: 0.0126 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 0.9181 L22: 0.5986 REMARK 3 L33: 1.9011 L12: -0.4723 REMARK 3 L13: 1.2844 L23: -0.8538 REMARK 3 S TENSOR REMARK 3 S11: -0.0386 S12: 0.1084 S13: 0.0577 REMARK 3 S21: -0.0537 S22: -0.0384 S23: -0.0888 REMARK 3 S31: -0.0017 S32: 0.1517 S33: 0.0753 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HQV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 113.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46967 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09700 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.47300 REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GEV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 1 MM DTT, 10% DMSO, 12% REMARK 280 PEG 8000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.44200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.50750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.44200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.50750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 616 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 675 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 108 CG1 CG2 REMARK 470 MET A 109 CG SD CE REMARK 470 SER A 110 OG REMARK 470 SER A 112 OG REMARK 470 SER A 113 OG REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ASP A 129 CG OD1 OD2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 220 CD OE1 OE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 HIS A 319 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 47 -107.47 -73.50 REMARK 500 ALA A 48 53.51 -57.15 REMARK 500 ALA A 48 53.51 33.12 REMARK 500 ARG A 77 119.81 -163.21 REMARK 500 LEU A 128 -104.51 -81.29 REMARK 500 ASP A 129 -167.29 -70.88 REMARK 500 GLN A 203 -165.40 -122.66 REMARK 500 SER A 205 -134.44 55.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QEI A 406 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.4 REMARK 620 3 CYS A 323 SG 113.9 116.3 REMARK 620 4 HIS A 349 ND1 105.5 113.8 100.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QEI A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GD0 RELATED DB: PDB REMARK 900 RELATED ID: 4GCX RELATED DB: PDB REMARK 900 RELATED ID: 4E2V RELATED DB: PDB REMARK 900 RELATED ID: 4H6E RELATED DB: PDB REMARK 900 RELATED ID: 4H7Z RELATED DB: PDB REMARK 900 RELATED ID: 3BLO RELATED DB: PDB REMARK 900 RELATED ID: 4HSH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THR TO LYS CONFLICT AT 312 IN UNP ENTRY P28720 DBREF 4HQV A 2 386 UNP P28720 TGT_ZYMMO 2 386 SEQADV 4HQV PHE A 106 UNP P28720 TYR 106 ENGINEERED MUTATION SEQADV 4HQV VAL A 158 UNP P28720 CYS 158 ENGINEERED MUTATION SEQADV 4HQV GLY A 233 UNP P28720 VAL 233 ENGINEERED MUTATION SEQADV 4HQV LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQRES 1 A 385 VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG PHE SEQRES 2 A 385 SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG THR SEQRES 3 A 385 GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR PRO SEQRES 4 A 385 ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS ALA SEQRES 5 A 385 LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP ILE SEQRES 6 A 385 ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO GLY SEQRES 7 A 385 ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER PHE SEQRES 8 A 385 MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY GLY SEQRES 9 A 385 PHE GLN VAL MET SER LEU SER SER LEU THR LYS GLN SER SEQRES 10 A 385 GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SER SEQRES 11 A 385 ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE GLN SEQRES 12 A 385 HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP GLU SEQRES 13 A 385 VAL THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SER SEQRES 14 A 385 SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER ARG SEQRES 15 A 385 ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN ALA SEQRES 16 A 385 ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU ASN SEQRES 17 A 385 LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE GLY SEQRES 18 A 385 PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA GLY GLY GLU SEQRES 19 A 385 GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER VAL SEQRES 20 A 385 PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET GLY SEQRES 21 A 385 VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU ARG SEQRES 22 A 385 GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SER SEQRES 23 A 385 GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO ILE SEQRES 24 A 385 ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS PRO SEQRES 25 A 385 LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS TRP SEQRES 26 A 385 SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY GLU SEQRES 27 A 385 ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE ALA SEQRES 28 A 385 PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER ILE SEQRES 29 A 385 SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE ARG SEQRES 30 A 385 ALA ARG TYR PHE ALA ARG ASN SER HET ZN A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET QEI A 406 13 HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM QEI 2-AMINO-5-({[(1S,4S,5R)-4,5-DIHYDROXYCYCLOPENT-2-EN-1- HETNAM 2 QEI YL]AMINO}METHYL)-3,7-DIHYDRO-4H-PYRROLO[2,3- HETNAM 3 QEI D]PYRIMIDIN-4-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN QEI QUEUINE FORMUL 2 ZN ZN 2+ FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 QEI C12 H15 N5 O3 FORMUL 8 HOH *397(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 SER A 188 1 25 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 GLU A 273 1 10 HELIX 13 13 VAL A 282 GLY A 291 1 10 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 MET A 43 0 SHEET 2 B 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 9 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 B 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 B 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 C 3 SER A 113 GLN A 117 0 SHEET 2 C 3 VAL A 122 LYS A 125 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 ARG A 132 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 401 1555 1555 2.34 LINK SG CYS A 320 ZN ZN A 401 1555 1555 2.36 LINK SG CYS A 323 ZN ZN A 401 1555 1555 2.28 LINK ND1 HIS A 349 ZN ZN A 401 1555 1555 2.10 CISPEP 1 THR A 39 PRO A 40 0 -1.79 CISPEP 2 ARG A 77 PRO A 78 0 6.13 CISPEP 3 TYR A 161 PRO A 162 0 -1.85 CISPEP 4 VAL A 262 GLY A 263 0 -1.38 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 9 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC2 9 ASP A 96 ARG A 97 HOH A 619 HOH A 668 SITE 3 AC2 9 HOH A 670 SITE 1 AC3 5 ALA A 219 MET A 250 PRO A 252 HOH A 774 SITE 2 AC3 5 HOH A 796 SITE 1 AC4 7 GLN A 117 ARG A 174 PRO A 252 ASP A 254 SITE 2 AC4 7 LYS A 255 HOH A 547 HOH A 721 SITE 1 AC5 7 TRP A 296 GLU A 317 LYS A 360 PHE A 373 SITE 2 AC5 7 ARG A 380 HOH A 521 HOH A 758 SITE 1 AC6 12 SER A 103 PHE A 106 ASP A 156 VAL A 158 SITE 2 AC6 12 ILE A 201 GLN A 203 GLY A 229 GLY A 230 SITE 3 AC6 12 LEU A 231 MET A 260 HOH A 573 HOH A 667 CRYST1 90.884 65.015 70.568 90.00 96.30 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011003 0.000000 0.001215 0.00000 SCALE2 0.000000 0.015381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014257 0.00000