HEADER TRANSFERASE/TRANSFERASE INHIBITOR 30-OCT-12 4HSH TITLE TRNA-GUANINE TRANSGLYCOSYLASE Y106F, V233G MUTANT IN COMPLEX WITH TITLE 2 QUEUINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE(3) PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9D-ZM-Y106F_V233G KEYWDS SUBSTRATE SPECIFICITY, BACTERIAL TGT, TRANSFERASE, GUANINE, PREQ1, KEYWDS 2 QUEUINE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR I.BIELA,N.TIDTEN-LUKSCH,A.HEINE,K.REUTER,G.KLEBE REVDAT 3 20-SEP-23 4HSH 1 REMARK SEQADV SHEET LINK REVDAT 2 17-JUL-13 4HSH 1 JRNL REVDAT 1 28-NOV-12 4HSH 0 JRNL AUTH I.BIELA,N.TIDTEN-LUKSCH,F.IMMEKUS,S.GLINCA,T.X.NGUYEN, JRNL AUTH 2 H.D.GERBER,A.HEINE,G.KLEBE,K.REUTER JRNL TITL INVESTIGATION OF SPECIFICITY DETERMINANTS IN BACTERIAL JRNL TITL 2 TRNA-GUANINE TRANSGLYCOSYLASE REVEALS QUEUINE, THE SUBSTRATE JRNL TITL 3 OF ITS EUCARYOTIC COUNTERPART, AS INHIBITOR. JRNL REF PLOS ONE V. 8 64240 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23704982 JRNL DOI 10.1371/JOURNAL.PONE.0064240 REMARK 2 REMARK 2 RESOLUTION. 1.56 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.56 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 54991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2769 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 20.8890 - 4.2202 0.99 2811 142 0.1706 0.1764 REMARK 3 2 4.2202 - 3.3542 1.00 2747 163 0.1398 0.1608 REMARK 3 3 3.3542 - 2.9315 0.99 2753 126 0.1513 0.1643 REMARK 3 4 2.9315 - 2.6641 0.99 2770 120 0.1523 0.1676 REMARK 3 5 2.6641 - 2.4735 0.99 2746 141 0.1553 0.1892 REMARK 3 6 2.4735 - 2.3278 0.99 2701 133 0.1475 0.1735 REMARK 3 7 2.3278 - 2.2114 0.96 2672 128 0.1558 0.1966 REMARK 3 8 2.2114 - 2.1152 0.98 2700 153 0.1406 0.1672 REMARK 3 9 2.1152 - 2.0339 0.97 2660 134 0.1465 0.1838 REMARK 3 10 2.0339 - 1.9637 0.97 2652 142 0.1431 0.1797 REMARK 3 11 1.9637 - 1.9024 0.94 2570 134 0.1665 0.2003 REMARK 3 12 1.9024 - 1.8480 0.94 2538 144 0.1537 0.1810 REMARK 3 13 1.8480 - 1.7994 0.95 2605 146 0.1469 0.1866 REMARK 3 14 1.7994 - 1.7555 0.95 2603 131 0.1487 0.1694 REMARK 3 15 1.7555 - 1.7156 0.93 2570 136 0.1644 0.2275 REMARK 3 16 1.7156 - 1.6791 0.91 2467 145 0.1689 0.2094 REMARK 3 17 1.6791 - 1.6456 0.91 2470 148 0.1738 0.2105 REMARK 3 18 1.6456 - 1.6145 0.90 2475 126 0.1863 0.2447 REMARK 3 19 1.6145 - 1.5857 0.89 2399 145 0.1921 0.2381 REMARK 3 20 1.5857 - 1.5600 0.85 2313 132 0.2013 0.2615 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 2948 REMARK 3 ANGLE : 1.613 3980 REMARK 3 CHIRALITY : 0.110 418 REMARK 3 PLANARITY : 0.009 524 REMARK 3 DIHEDRAL : 13.598 1090 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9560 6.2972 18.9446 REMARK 3 T TENSOR REMARK 3 T11: 0.0958 T22: 0.0636 REMARK 3 T33: 0.0946 T12: 0.0009 REMARK 3 T13: -0.0017 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.9932 L22: 0.1740 REMARK 3 L33: 0.8720 L12: -0.1436 REMARK 3 L13: 0.2019 L23: 0.0148 REMARK 3 S TENSOR REMARK 3 S11: -0.0122 S12: -0.0044 S13: 0.0995 REMARK 3 S21: 0.0264 S22: -0.0002 S23: -0.0140 REMARK 3 S31: -0.0692 S32: -0.0637 S33: 0.0020 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0824 14.1652 27.1533 REMARK 3 T TENSOR REMARK 3 T11: 0.1175 T22: 0.0882 REMARK 3 T33: 0.1078 T12: 0.0129 REMARK 3 T13: -0.0122 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.9292 L22: 1.1745 REMARK 3 L33: 1.3314 L12: -0.0485 REMARK 3 L13: -0.2229 L23: 0.5211 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.0806 S13: 0.1388 REMARK 3 S21: 0.0016 S22: 0.0271 S23: -0.0716 REMARK 3 S31: -0.1685 S32: 0.0361 S33: -0.0743 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.7584 7.4792 -0.9620 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1246 REMARK 3 T33: 0.1256 T12: -0.0086 REMARK 3 T13: 0.0110 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.8514 L22: 0.5340 REMARK 3 L33: 1.8266 L12: -0.5672 REMARK 3 L13: 1.2590 L23: -0.8519 REMARK 3 S TENSOR REMARK 3 S11: -0.0405 S12: 0.0906 S13: 0.0444 REMARK 3 S21: -0.0274 S22: -0.0301 S23: -0.0797 REMARK 3 S31: -0.0066 S32: 0.1114 S33: 0.0780 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4HSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075864. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-APR-12 REMARK 200 TEMPERATURE (KELVIN) : 113.15 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57754 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.560 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08800 REMARK 200 FOR THE DATA SET : 15.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.56 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49600 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3GEV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS, 1 MM DTT, 10% DMSO, 12% REMARK 280 PEG 8000, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.27700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.38900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.27700 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.38900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 614 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 111 REMARK 465 SER A 112 REMARK 465 SER A 113 REMARK 465 LEU A 114 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 SER A 131 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 108 CG1 CG2 REMARK 470 MET A 109 CG SD CE REMARK 470 SER A 110 OG REMARK 470 THR A 115 OG1 CG2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 GLN A 117 CG CD OE1 NE2 REMARK 470 GLU A 120 CG CD OE1 OE2 REMARK 470 PHE A 124 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 SER A 126 OG REMARK 470 HIS A 127 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 MET A 134 CG SD CE REMARK 470 CYS A 158 SG REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 GLU A 220 CG CD OE1 OE2 REMARK 470 ARG A 286 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 GLN A 375 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 336 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 203 -169.65 -121.83 REMARK 500 SER A 205 -134.84 54.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 262 GLY A 263 -103.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 QEI A 409 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.9 REMARK 620 3 CYS A 323 SG 114.5 115.7 REMARK 620 4 HIS A 349 ND1 105.7 114.0 99.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE QEI A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GD0 RELATED DB: PDB REMARK 900 RELATED ID: 4GCX RELATED DB: PDB REMARK 900 RELATED ID: 4E2V RELATED DB: PDB REMARK 900 RELATED ID: 4H6E RELATED DB: PDB REMARK 900 RELATED ID: 4H7Z RELATED DB: PDB REMARK 900 RELATED ID: 3BLO RELATED DB: PDB REMARK 900 RELATED ID: 4HQV RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THR TO LYS CONFLICT AT 312 IN UNP ENTRY P28720 DBREF 4HSH A 2 386 UNP P28720 TGT_ZYMMO 2 386 SEQADV 4HSH PHE A 106 UNP P28720 TYR 106 ENGINEERED MUTATION SEQADV 4HSH GLY A 233 UNP P28720 VAL 233 ENGINEERED MUTATION SEQADV 4HSH LYS A 312 UNP P28720 THR 312 SEE REMARK 999 SEQRES 1 A 385 VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG PHE SEQRES 2 A 385 SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG THR SEQRES 3 A 385 GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR PRO SEQRES 4 A 385 ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS ALA SEQRES 5 A 385 LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP ILE SEQRES 6 A 385 ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO GLY SEQRES 7 A 385 ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER PHE SEQRES 8 A 385 MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY GLY SEQRES 9 A 385 PHE GLN VAL MET SER LEU SER SER LEU THR LYS GLN SER SEQRES 10 A 385 GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SER SEQRES 11 A 385 ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE GLN SEQRES 12 A 385 HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP GLU SEQRES 13 A 385 CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SER SEQRES 14 A 385 SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER ARG SEQRES 15 A 385 ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN ALA SEQRES 16 A 385 ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU ASN SEQRES 17 A 385 LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE GLY SEQRES 18 A 385 PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA GLY GLY GLU SEQRES 19 A 385 GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER VAL SEQRES 20 A 385 PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET GLY SEQRES 21 A 385 VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU ARG SEQRES 22 A 385 GLY ILE ASP MET PHE ASP CYS VAL LEU PRO THR ARG SER SEQRES 23 A 385 GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO ILE SEQRES 24 A 385 ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS PRO SEQRES 25 A 385 LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS TRP SEQRES 26 A 385 SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY GLU SEQRES 27 A 385 ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE ALA SEQRES 28 A 385 PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER ILE SEQRES 29 A 385 SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE ARG SEQRES 30 A 385 ALA ARG TYR PHE ALA ARG ASN SER HET GOL A 401 6 HET ZN A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET QEI A 409 12 HETNAM GOL GLYCEROL HETNAM ZN ZINC ION HETNAM QEI 2-AMINO-5-({[(1S,4S,5R)-4,5-DIHYDROXYCYCLOPENT-2-EN-1- HETNAM 2 QEI YL]AMINO}METHYL)-3,7-DIHYDRO-4H-PYRROLO[2,3- HETNAM 3 QEI D]PYRIMIDIN-4-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN QEI QUEUINE FORMUL 2 GOL 7(C3 H8 O3) FORMUL 3 ZN ZN 2+ FORMUL 10 QEI C12 H15 N5 O3 FORMUL 11 HOH *318(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 ASN A 70 ARG A 77 1 8 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 110 1 7 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 SER A 188 1 25 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 ARG A 274 1 11 HELIX 13 13 VAL A 282 GLY A 291 1 10 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 9 ALA A 41 MET A 43 0 SHEET 2 B 9 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 9 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 9 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 9 ALA A 197 GLN A 202 1 N GLN A 202 O ALA A 227 SHEET 6 B 9 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 9 ILE A 99 THR A 101 1 N THR A 101 O ILE A 151 SHEET 8 B 9 ILE A 67 GLY A 69 1 N GLY A 69 O LEU A 100 SHEET 9 B 9 VAL A 45 GLY A 46 1 N GLY A 46 O LEU A 68 SHEET 1 C 2 LYS A 116 GLN A 117 0 SHEET 2 C 2 HIS A 133 LEU A 135 -1 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.29 LINK SG CYS A 320 ZN ZN A 402 1555 1555 2.28 LINK SG CYS A 323 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 349 ZN ZN A 402 1555 1555 2.13 CISPEP 1 THR A 39 PRO A 40 0 -1.12 CISPEP 2 ARG A 77 PRO A 78 0 7.52 CISPEP 3 TYR A 161 PRO A 162 0 2.29 SITE 1 AC1 7 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC1 7 ASP A 96 ARG A 97 HOH A 753 SITE 1 AC2 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC3 7 ALA A 20 ARG A 21 ARG A 82 ALA A 305 SITE 2 AC3 7 SER A 308 HIS A 332 ARG A 336 SITE 1 AC4 7 GLN A 117 SER A 118 ARG A 174 PRO A 252 SITE 2 AC4 7 ASP A 254 LYS A 255 HOH A 572 SITE 1 AC5 4 LYS A 55 THR A 58 HOH A 507 HOH A 543 SITE 1 AC6 4 ALA A 61 CYS A 320 ALA A 321 GLU A 348 SITE 1 AC7 8 ARG A 34 HIS A 145 GLY A 148 SER A 149 SITE 2 AC7 8 GLU A 191 GLN A 192 HOH A 548 HOH A 564 SITE 1 AC8 5 VAL A 206 PHE A 207 GLU A 208 ARG A 242 SITE 2 AC8 5 HOH A 574 SITE 1 AC9 9 PHE A 106 ASP A 156 GLN A 203 GLY A 229 SITE 2 AC9 9 GLY A 230 LEU A 231 MET A 260 HOH A 555 SITE 3 AC9 9 HOH A 556 CRYST1 90.554 64.778 70.479 90.00 95.95 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011043 0.000000 0.001151 0.00000 SCALE2 0.000000 0.015437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014265 0.00000