HEADER OXIDOREDUCTASE 31-OCT-12 4HSX TITLE STRUCTURE OF THE L100F MUTANT OF DEHALOPEROXIDASE-HEMOGLOBIN A FROM TITLE 2 AMPHITRITE ORNATA WITH 4-BROMOPHENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEHALOPEROXIDASE A; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.11.1.7; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMPHITRITE ORNATA; SOURCE 3 ORGANISM_TAXID: 129555; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLOBIN, OXYGEN STORAGE, PEROXIDASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.THOMPSON,A.PLUMMER,S.FRANZEN REVDAT 3 28-FEB-24 4HSX 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4HSX 1 REMARK REVDAT 1 01-MAY-13 4HSX 0 JRNL AUTH A.PLUMMER,M.K.THOMPSON,S.FRANZEN JRNL TITL ROLE OF POLARITY OF THE DISTAL POCKET IN THE CONTROL OF JRNL TITL 2 INHIBITOR BINDING IN DEHALOPEROXIDASE-HEMOGLOBIN. JRNL REF BIOCHEMISTRY V. 52 2218 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23480794 JRNL DOI 10.1021/BI301509R REMARK 2 REMARK 2 RESOLUTION. 1.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 105290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.126 REMARK 3 FREE R VALUE : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5259 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.12 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6874 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.21 REMARK 3 BIN R VALUE (WORKING SET) : 0.1230 REMARK 3 BIN FREE R VALUE SET COUNT : 368 REMARK 3 BIN FREE R VALUE : 0.1490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2188 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 128 REMARK 3 SOLVENT ATOMS : 408 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.89 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.22000 REMARK 3 B22 (A**2) : -0.16000 REMARK 3 B33 (A**2) : -0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.028 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.029 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.016 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.705 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2562 ; 0.030 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3517 ; 3.523 ; 2.005 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 326 ; 5.100 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 127 ;38.505 ;24.409 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 447 ;13.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;18.917 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2015 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2562 ; 9.921 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 61 ;20.087 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 2833 ; 7.598 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4HSX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075880. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 1.120 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.12 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG 4000, 0.2M AMMONIUM SULFATE , REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.12050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.72050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 34.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.12050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.72050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C3 BML A 206 O HOH A 512 1.63 REMARK 500 OE2 GLU B 106 O HOH B 452 2.01 REMARK 500 OE1 GLN B 44 O HOH B 438 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 55 N HIS A 55 CA 0.123 REMARK 500 THR A 56 N THR A 56 CA -0.179 REMARK 500 LYS A 58 CD LYS A 58 CE 0.163 REMARK 500 HIS A 89 CG HIS A 89 CD2 0.056 REMARK 500 PHE A 100 CG PHE A 100 CD2 0.093 REMARK 500 ARG A 122 CZ ARG A 122 NH2 -0.091 REMARK 500 ASP B 19 CB ASP B 19 CG 0.132 REMARK 500 HIS B 55 CG HIS B 55 CD2 0.064 REMARK 500 GLU B 65 CD GLU B 65 OE2 -0.122 REMARK 500 ARG B 109 CZ ARG B 109 NH1 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NH1 - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ARG A 10 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 33 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP A 54 CB - CG - OD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ASP A 54 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 THR A 56 CA - CB - CG2 ANGL. DEV. = -8.9 DEGREES REMARK 500 MET A 63 CG - SD - CE ANGL. DEV. = -21.0 DEGREES REMARK 500 ASP A 72 CB - CG - OD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 PHE A 100 CB - CG - CD2 ANGL. DEV. = -6.7 DEGREES REMARK 500 PHE A 100 CB - CG - CD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 116 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 122 NH1 - CZ - NH2 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 122 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 122 NE - CZ - NH2 ANGL. DEV. = -15.2 DEGREES REMARK 500 ASP B 30 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP B 30 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLU B 57 OE1 - CD - OE2 ANGL. DEV. = 8.3 DEGREES REMARK 500 GLU B 65 OE1 - CD - OE2 ANGL. DEV. = -18.9 DEGREES REMARK 500 GLU B 98 OE1 - CD - OE2 ANGL. DEV. = -13.3 DEGREES REMARK 500 GLU B 98 CG - CD - OE1 ANGL. DEV. = 16.8 DEGREES REMARK 500 PHE B 100 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 PHE B 100 CB - CG - CD1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG B 109 CG - CD - NE ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG B 109 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 109 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 122 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 113 -166.25 -110.63 REMARK 500 SER A 114 51.31 -117.21 REMARK 500 ASP B 12 52.41 -146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 122 0.10 SIDE CHAIN REMARK 500 GLU B 65 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 112 -10.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 89 NE2 REMARK 620 2 HEM A 201 NA 97.0 REMARK 620 3 HEM A 201 NB 95.1 89.1 REMARK 620 4 HEM A 201 NC 93.9 169.1 90.3 REMARK 620 5 HEM A 201 ND 94.1 88.8 170.7 90.1 REMARK 620 6 HOH A 512 O 167.7 92.2 93.2 77.0 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 89 NE2 REMARK 620 2 HEM B 201 NA 98.8 REMARK 620 3 HEM B 201 NB 95.5 88.4 REMARK 620 4 HEM B 201 NC 96.1 165.1 89.1 REMARK 620 5 HEM B 201 ND 96.3 89.3 168.2 90.1 REMARK 620 6 HOH B 494 O 163.8 89.7 98.5 76.2 69.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BML A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BML B 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HSW RELATED DB: PDB DBREF 4HSX A 1 137 UNP Q9NAV8 Q9NAV8_9ANNE 2 138 DBREF 4HSX B 1 137 UNP Q9NAV8 Q9NAV8_9ANNE 2 138 SEQADV 4HSX PHE A 100 UNP Q9NAV8 LEU 101 ENGINEERED MUTATION SEQADV 4HSX PHE B 100 UNP Q9NAV8 LEU 101 ENGINEERED MUTATION SEQRES 1 A 137 GLY PHE LYS GLN ASP ILE ALA THR ILE ARG GLY ASP LEU SEQRES 2 A 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 A 137 LYS TYR PRO ASP GLU ARG ARG TYR PHE LYS ASN TYR VAL SEQRES 4 A 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 A 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 A 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 A 137 ASP ALA ASN THR LEU VAL GLN MET LYS GLN HIS SER SER SEQRES 8 A 137 LEU THR THR GLY ASN PHE GLU LYS PHE PHE VAL ALA LEU SEQRES 9 A 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 A 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 A 137 LEU SER SER ALA GLY MET LYS SEQRES 1 B 137 GLY PHE LYS GLN ASP ILE ALA THR ILE ARG GLY ASP LEU SEQRES 2 B 137 ARG THR TYR ALA GLN ASP ILE PHE LEU ALA PHE LEU ASN SEQRES 3 B 137 LYS TYR PRO ASP GLU ARG ARG TYR PHE LYS ASN TYR VAL SEQRES 4 B 137 GLY LYS SER ASP GLN GLU LEU LYS SER MET ALA LYS PHE SEQRES 5 B 137 GLY ASP HIS THR GLU LYS VAL PHE ASN LEU MET MET GLU SEQRES 6 B 137 VAL ALA ASP ARG ALA THR ASP CYS VAL PRO LEU ALA SER SEQRES 7 B 137 ASP ALA ASN THR LEU VAL GLN MET LYS GLN HIS SER SER SEQRES 8 B 137 LEU THR THR GLY ASN PHE GLU LYS PHE PHE VAL ALA LEU SEQRES 9 B 137 VAL GLU TYR MET ARG ALA SER GLY GLN SER PHE ASP SER SEQRES 10 B 137 GLN SER TRP ASP ARG PHE GLY LYS ASN LEU VAL SER ALA SEQRES 11 B 137 LEU SER SER ALA GLY MET LYS HET HEM A 201 43 HET SO4 A 202 5 HET SO4 A 203 5 HET SO4 A 204 5 HET GOL A 205 6 HET BML A 206 8 HET HEM B 201 43 HET SO4 B 202 5 HET BML B 203 8 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM BML 4-BROMOPHENOL HETSYN HEM HEME HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 SO4 4(O4 S 2-) FORMUL 7 GOL C3 H8 O3 FORMUL 8 BML 2(C6 H5 BR O) FORMUL 12 HOH *408(H2 O) HELIX 1 1 GLY A 1 ASP A 12 1 12 HELIX 2 2 ASP A 12 TYR A 28 1 17 HELIX 3 3 PRO A 29 VAL A 39 5 11 HELIX 4 4 SER A 42 SER A 48 1 7 HELIX 5 5 MET A 49 ALA A 70 1 22 HELIX 6 6 LEU A 76 MET A 86 1 11 HELIX 7 7 LYS A 87 SER A 90 5 4 HELIX 8 8 THR A 93 SER A 111 1 19 HELIX 9 9 ASP A 116 ALA A 134 1 19 HELIX 10 10 PHE B 2 GLY B 11 1 10 HELIX 11 11 ASP B 12 TYR B 28 1 17 HELIX 12 12 PRO B 29 PHE B 35 5 7 HELIX 13 13 SER B 42 SER B 48 1 7 HELIX 14 14 LYS B 51 ALA B 70 1 20 HELIX 15 15 LEU B 76 MET B 86 1 11 HELIX 16 16 LYS B 87 SER B 90 5 4 HELIX 17 17 THR B 93 SER B 111 1 19 HELIX 18 18 ASP B 116 ALA B 134 1 19 LINK NE2 HIS A 89 FE HEM A 201 1555 1555 2.08 LINK FE HEM A 201 O HOH A 512 1555 1555 2.22 LINK NE2 HIS B 89 FE HEM B 201 1555 1555 2.12 LINK FE HEM B 201 O HOH B 494 1555 1555 2.32 SITE 1 AC1 19 PHE A 24 GLU A 31 TYR A 34 PHE A 35 SITE 2 AC1 19 ASP A 54 HIS A 55 LYS A 58 VAL A 59 SITE 3 AC1 19 MET A 86 GLN A 88 HIS A 89 LEU A 92 SITE 4 AC1 19 ASN A 96 PHE A 97 BML A 206 HOH A 357 SITE 5 AC1 19 HOH A 390 HOH A 464 HOH A 512 SITE 1 AC2 11 GLY A 1 PHE A 2 LYS A 3 HOH A 304 SITE 2 AC2 11 HOH A 387 HOH A 482 ARG B 32 VAL B 39 SITE 3 AC2 11 GLY B 40 HOH B 303 HOH B 457 SITE 1 AC3 10 ARG A 32 GLY A 40 HOH A 429 GLY B 1 SITE 2 AC3 10 PHE B 2 LYS B 3 ASP B 116 HOH B 308 SITE 3 AC3 10 HOH B 335 HOH B 367 SITE 1 AC4 5 SER A 91 ARG A 109 GLN A 118 HOH A 395 SITE 2 AC4 5 HOH A 465 SITE 1 AC5 7 GLN A 4 ASP A 5 THR A 8 GLN A 113 SITE 2 AC5 7 SER A 114 HOH A 401 HOH B 334 SITE 1 AC6 9 PHE A 21 PHE A 35 TYR A 38 HIS A 55 SITE 2 AC6 9 THR A 56 VAL A 59 PHE A 100 HEM A 201 SITE 3 AC6 9 HOH A 512 SITE 1 AC7 18 GLU B 31 TYR B 34 PHE B 35 HIS B 55 SITE 2 AC7 18 LYS B 58 VAL B 59 MET B 63 MET B 86 SITE 3 AC7 18 GLN B 88 HIS B 89 LEU B 92 ASN B 96 SITE 4 AC7 18 PHE B 97 LEU B 127 BML B 203 HOH B 353 SITE 5 AC7 18 HOH B 446 HOH B 494 SITE 1 AC8 7 ASN B 37 TYR B 38 VAL B 39 HOH B 365 SITE 2 AC8 7 HOH B 380 HOH B 430 HOH B 470 SITE 1 AC9 9 PHE B 21 PHE B 35 HIS B 55 THR B 56 SITE 2 AC9 9 VAL B 59 PHE B 100 HEM B 201 HOH B 429 SITE 3 AC9 9 HOH B 494 CRYST1 58.241 67.441 69.338 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017170 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014422 0.00000 CONECT 752 2395 CONECT 1947 2467 CONECT 2353 2357 2384 CONECT 2354 2360 2367 CONECT 2355 2370 2374 CONECT 2356 2377 2381 CONECT 2357 2353 2358 2391 CONECT 2358 2357 2359 2362 CONECT 2359 2358 2360 2361 CONECT 2360 2354 2359 2391 CONECT 2361 2359 CONECT 2362 2358 2363 CONECT 2363 2362 2364 CONECT 2364 2363 2365 2366 CONECT 2365 2364 CONECT 2366 2364 CONECT 2367 2354 2368 2392 CONECT 2368 2367 2369 2371 CONECT 2369 2368 2370 2372 CONECT 2370 2355 2369 2392 CONECT 2371 2368 CONECT 2372 2369 2373 CONECT 2373 2372 CONECT 2374 2355 2375 2393 CONECT 2375 2374 2376 2378 CONECT 2376 2375 2377 2379 CONECT 2377 2356 2376 2393 CONECT 2378 2375 CONECT 2379 2376 2380 CONECT 2380 2379 CONECT 2381 2356 2382 2394 CONECT 2382 2381 2383 2385 CONECT 2383 2382 2384 2386 CONECT 2384 2353 2383 2394 CONECT 2385 2382 CONECT 2386 2383 2387 CONECT 2387 2386 2388 CONECT 2388 2387 2389 2390 CONECT 2389 2388 CONECT 2390 2388 CONECT 2391 2357 2360 2395 CONECT 2392 2367 2370 2395 CONECT 2393 2374 2377 2395 CONECT 2394 2381 2384 2395 CONECT 2395 752 2391 2392 2393 CONECT 2395 2394 2696 CONECT 2396 2397 2398 2399 2400 CONECT 2397 2396 CONECT 2398 2396 CONECT 2399 2396 CONECT 2400 2396 CONECT 2401 2402 2403 2404 2405 CONECT 2402 2401 CONECT 2403 2401 CONECT 2404 2401 CONECT 2405 2401 CONECT 2406 2407 2408 2409 2410 CONECT 2407 2406 CONECT 2408 2406 CONECT 2409 2406 CONECT 2410 2406 CONECT 2411 2412 2413 CONECT 2412 2411 CONECT 2413 2411 2414 2415 CONECT 2414 2413 CONECT 2415 2413 2416 CONECT 2416 2415 CONECT 2417 2418 CONECT 2418 2417 2419 2423 CONECT 2419 2418 2420 CONECT 2420 2419 2421 CONECT 2421 2420 2422 2424 CONECT 2422 2421 2423 CONECT 2423 2418 2422 CONECT 2424 2421 CONECT 2425 2429 2456 CONECT 2426 2432 2439 CONECT 2427 2442 2446 CONECT 2428 2449 2453 CONECT 2429 2425 2430 2463 CONECT 2430 2429 2431 2434 CONECT 2431 2430 2432 2433 CONECT 2432 2426 2431 2463 CONECT 2433 2431 CONECT 2434 2430 2435 CONECT 2435 2434 2436 CONECT 2436 2435 2437 2438 CONECT 2437 2436 CONECT 2438 2436 CONECT 2439 2426 2440 2464 CONECT 2440 2439 2441 2443 CONECT 2441 2440 2442 2444 CONECT 2442 2427 2441 2464 CONECT 2443 2440 CONECT 2444 2441 2445 CONECT 2445 2444 CONECT 2446 2427 2447 2465 CONECT 2447 2446 2448 2450 CONECT 2448 2447 2449 2451 CONECT 2449 2428 2448 2465 CONECT 2450 2447 CONECT 2451 2448 2452 CONECT 2452 2451 CONECT 2453 2428 2454 2466 CONECT 2454 2453 2455 2457 CONECT 2455 2454 2456 2458 CONECT 2456 2425 2455 2466 CONECT 2457 2454 CONECT 2458 2455 2459 CONECT 2459 2458 2460 CONECT 2460 2459 2461 2462 CONECT 2461 2460 CONECT 2462 2460 CONECT 2463 2429 2432 2467 CONECT 2464 2439 2442 2467 CONECT 2465 2446 2449 2467 CONECT 2466 2453 2456 2467 CONECT 2467 1947 2463 2464 2465 CONECT 2467 2466 2896 CONECT 2468 2469 2470 2471 2472 CONECT 2469 2468 CONECT 2470 2468 CONECT 2471 2468 CONECT 2472 2468 CONECT 2473 2474 CONECT 2474 2473 2475 2479 CONECT 2475 2474 2476 CONECT 2476 2475 2477 CONECT 2477 2476 2478 2480 CONECT 2478 2477 2479 CONECT 2479 2474 2478 CONECT 2480 2477 CONECT 2696 2395 CONECT 2896 2467 MASTER 446 0 9 18 0 0 28 6 2724 2 134 22 END