HEADER METAL BINDING PROTEIN 31-OCT-12 4HSZ TITLE STRUCTURE OF TRUNCATED (DELTA8C) S100A4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN S100-A4; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 1-93; COMPND 5 SYNONYM: CALVASCULIN, METASTASIN, PLACENTAL CALCIUM-BINDING PROTEIN, COMPND 6 PROTEIN MTS1, S100 CALCIUM-BINDING PROTEIN A4; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAPL, MTS1, S100A4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR U.A.RAMAGOPAL,N.G.DULYANINOVA,P.R.KUMAR,S.C.ALMO,A.R.BRESNICK,NEW AUTHOR 2 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 20-SEP-23 4HSZ 1 REMARK LINK REVDAT 1 30-JAN-13 4HSZ 0 JRNL AUTH U.A.RAMAGOPAL,N.G.DULYANINOVA,P.R.KUMAR,S.C.ALMO, JRNL AUTH 2 A.R.BRESNICK JRNL TITL STRUCTURE OF TRUNCATED (DELTA8C) S100A4 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 14934 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 751 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 986 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.86 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 49 REMARK 3 BIN FREE R VALUE : 0.3470 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2890 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.78000 REMARK 3 B22 (A**2) : -2.97000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : -0.56000 REMARK 3 B13 (A**2) : 1.60000 REMARK 3 B23 (A**2) : -0.95000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.568 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.291 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.258 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.869 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.914 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2938 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3924 ; 0.984 ; 1.979 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 356 ; 4.460 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;30.906 ;25.479 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 575 ;14.644 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.836 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 420 ; 0.063 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2187 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1788 ; 1.095 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2859 ; 2.197 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 3.734 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1065 ; 5.886 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 202 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5180 -5.8590 10.1640 REMARK 3 T TENSOR REMARK 3 T11: 0.6372 T22: 0.3244 REMARK 3 T33: 0.2858 T12: 0.2128 REMARK 3 T13: -0.0482 T23: -0.0178 REMARK 3 L TENSOR REMARK 3 L11: -0.1489 L22: 5.2413 REMARK 3 L33: 2.5615 L12: -2.1432 REMARK 3 L13: -0.3855 L23: 1.7286 REMARK 3 S TENSOR REMARK 3 S11: -0.5465 S12: 0.2083 S13: 0.1592 REMARK 3 S21: 0.8954 S22: 0.5923 S23: -0.0096 REMARK 3 S31: 0.2557 S32: 0.2100 S33: -0.0458 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 202 REMARK 3 ORIGIN FOR THE GROUP (A): -1.8200 5.2640 -9.2380 REMARK 3 T TENSOR REMARK 3 T11: 0.3426 T22: 0.3943 REMARK 3 T33: 0.3879 T12: 0.0325 REMARK 3 T13: -0.1151 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.6669 L22: 3.2521 REMARK 3 L33: 2.2750 L12: -1.9393 REMARK 3 L13: -0.3409 L23: -0.2463 REMARK 3 S TENSOR REMARK 3 S11: -0.0606 S12: 0.1233 S13: 0.0397 REMARK 3 S21: 0.1477 S22: 0.0603 S23: 0.0333 REMARK 3 S31: -0.0640 S32: 0.0058 S33: 0.0003 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 202 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1580 -12.4380 -36.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.3577 T22: 0.3885 REMARK 3 T33: 0.3934 T12: -0.0072 REMARK 3 T13: -0.0038 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 1.2591 L22: 2.3458 REMARK 3 L33: 2.7097 L12: 1.4893 REMARK 3 L13: 0.4801 L23: -0.3947 REMARK 3 S TENSOR REMARK 3 S11: -0.0513 S12: -0.0894 S13: 0.0017 REMARK 3 S21: -0.2151 S22: 0.0781 S23: -0.0015 REMARK 3 S31: 0.1493 S32: 0.0536 S33: -0.0268 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 203 B 212 REMARK 3 RESIDUE RANGE : D 9 D 102 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5030 -1.5000 -56.2500 REMARK 3 T TENSOR REMARK 3 T11: 0.6194 T22: 0.3442 REMARK 3 T33: 0.2947 T12: -0.1480 REMARK 3 T13: -0.1050 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: -0.7044 L22: 4.8041 REMARK 3 L33: 3.6341 L12: 2.5317 REMARK 3 L13: -0.1091 L23: 0.4754 REMARK 3 S TENSOR REMARK 3 S11: -0.5407 S12: -0.2289 S13: -0.0262 REMARK 3 S21: -0.8213 S22: 0.5696 S23: 0.1351 REMARK 3 S31: -0.2225 S32: 0.2703 S33: -0.0289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HSZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14935 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 2.100 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.42200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAWELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2Q91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.0, MAGNESIUM REMARK 280 CHLORIDE, 15% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K, PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -82.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 PHE A 93 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 PHE B 93 REMARK 465 MET C 1 REMARK 465 ALA C 2 REMARK 465 PHE C 93 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 PHE D 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CE NZ REMARK 470 GLU C 88 CG CD OE1 OE2 REMARK 470 ARG D 66 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 42 50.42 -119.04 REMARK 500 ASN B 87 45.69 -95.04 REMARK 500 GLU C 91 107.96 -41.51 REMARK 500 ASP D 63 70.43 -67.13 REMARK 500 ARG D 66 92.83 57.96 REMARK 500 ASP D 67 34.58 -163.44 REMARK 500 ASN D 68 28.07 43.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 20 O REMARK 620 2 GLU A 23 O 94.7 REMARK 620 3 ASP A 25 O 85.2 86.3 REMARK 620 4 LYS A 28 O 91.0 174.1 92.6 REMARK 620 5 GLU A 33 OE1 97.1 91.6 177.0 89.3 REMARK 620 6 GLU A 33 OE2 57.0 70.2 131.8 114.6 49.0 REMARK 620 7 HOH A 201 O 164.5 72.9 102.8 101.8 74.5 109.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 63 OD1 REMARK 620 2 ASN A 65 OD1 76.0 REMARK 620 3 ASP A 67 OD1 72.8 83.0 REMARK 620 4 GLU A 69 O 82.5 155.5 79.6 REMARK 620 5 GLU A 74 OE1 113.9 116.7 159.9 82.6 REMARK 620 6 GLU A 74 OE2 93.0 65.4 147.9 128.0 52.2 REMARK 620 7 HOH A 202 O 158.2 88.5 90.4 108.7 86.6 94.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 20 O REMARK 620 2 GLU B 23 O 91.7 REMARK 620 3 ASP B 25 O 75.0 87.1 REMARK 620 4 LYS B 28 O 82.6 168.9 82.2 REMARK 620 5 GLU B 33 OE1 82.2 112.8 150.3 76.0 REMARK 620 6 GLU B 33 OE2 64.6 70.1 132.1 115.3 47.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 63 OD1 REMARK 620 2 ASN B 65 OD1 80.9 REMARK 620 3 ASP B 67 OD1 82.5 76.6 REMARK 620 4 GLU B 69 O 86.6 153.0 78.1 REMARK 620 5 GLU B 74 OE1 117.4 123.6 152.1 83.4 REMARK 620 6 GLU B 74 OE2 86.3 77.3 152.9 125.8 53.7 REMARK 620 7 HOH B 202 O 161.2 90.6 79.3 93.8 81.3 108.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 20 O REMARK 620 2 GLU C 23 O 98.8 REMARK 620 3 ASP C 25 O 81.1 86.8 REMARK 620 4 LYS C 28 O 88.7 166.0 82.7 REMARK 620 5 GLU C 33 OE1 95.0 117.9 155.3 72.9 REMARK 620 6 GLU C 33 OE2 72.9 78.0 147.2 115.7 49.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 63 OD1 REMARK 620 2 ASN C 65 OD1 79.0 REMARK 620 3 ASP C 67 OD1 81.2 83.1 REMARK 620 4 GLU C 69 O 81.5 155.1 78.7 REMARK 620 5 GLU C 74 OE1 116.9 120.1 151.8 82.7 REMARK 620 6 GLU C 74 OE2 89.9 71.2 154.0 124.2 53.0 REMARK 620 7 HOH C 202 O 150.8 83.2 73.9 107.6 92.0 106.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER D 20 O REMARK 620 2 GLU D 23 O 90.4 REMARK 620 3 ASP D 25 O 76.1 76.0 REMARK 620 4 LYS D 28 O 89.9 165.6 90.1 REMARK 620 5 GLU D 33 OE1 94.7 112.1 168.2 82.3 REMARK 620 6 GLU D 33 OE2 63.2 74.9 128.9 117.9 49.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 102 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 63 OD1 REMARK 620 2 ASN D 65 OD1 63.4 REMARK 620 3 ASP D 67 OD1 64.1 73.5 REMARK 620 4 GLU D 69 O 78.9 142.3 89.2 REMARK 620 5 GLU D 74 OE1 111.5 100.5 173.5 94.6 REMARK 620 6 GLU D 74 OE2 84.8 52.9 126.0 128.6 47.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA D 102 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Q91 RELATED DB: PDB REMARK 900 RELATED ID: NYSGRC-012776 RELATED DB: TARGETTRACK DBREF 4HSZ A 1 93 UNP P26447 S10A4_HUMAN 1 93 DBREF 4HSZ B 1 93 UNP P26447 S10A4_HUMAN 1 93 DBREF 4HSZ C 1 93 UNP P26447 S10A4_HUMAN 1 93 DBREF 4HSZ D 1 93 UNP P26447 S10A4_HUMAN 1 93 SEQRES 1 A 93 MET ALA CYS PRO LEU GLU LYS ALA LEU ASP VAL MET VAL SEQRES 2 A 93 SER THR PHE HIS LYS TYR SER GLY LYS GLU GLY ASP LYS SEQRES 3 A 93 PHE LYS LEU ASN LYS SER GLU LEU LYS GLU LEU LEU THR SEQRES 4 A 93 ARG GLU LEU PRO SER PHE LEU GLY LYS ARG THR ASP GLU SEQRES 5 A 93 ALA ALA PHE GLN LYS LEU MET SER ASN LEU ASP SER ASN SEQRES 6 A 93 ARG ASP ASN GLU VAL ASP PHE GLN GLU TYR CYS VAL PHE SEQRES 7 A 93 LEU SER CYS ILE ALA MET MET CYS ASN GLU PHE PHE GLU SEQRES 8 A 93 GLY PHE SEQRES 1 B 93 MET ALA CYS PRO LEU GLU LYS ALA LEU ASP VAL MET VAL SEQRES 2 B 93 SER THR PHE HIS LYS TYR SER GLY LYS GLU GLY ASP LYS SEQRES 3 B 93 PHE LYS LEU ASN LYS SER GLU LEU LYS GLU LEU LEU THR SEQRES 4 B 93 ARG GLU LEU PRO SER PHE LEU GLY LYS ARG THR ASP GLU SEQRES 5 B 93 ALA ALA PHE GLN LYS LEU MET SER ASN LEU ASP SER ASN SEQRES 6 B 93 ARG ASP ASN GLU VAL ASP PHE GLN GLU TYR CYS VAL PHE SEQRES 7 B 93 LEU SER CYS ILE ALA MET MET CYS ASN GLU PHE PHE GLU SEQRES 8 B 93 GLY PHE SEQRES 1 C 93 MET ALA CYS PRO LEU GLU LYS ALA LEU ASP VAL MET VAL SEQRES 2 C 93 SER THR PHE HIS LYS TYR SER GLY LYS GLU GLY ASP LYS SEQRES 3 C 93 PHE LYS LEU ASN LYS SER GLU LEU LYS GLU LEU LEU THR SEQRES 4 C 93 ARG GLU LEU PRO SER PHE LEU GLY LYS ARG THR ASP GLU SEQRES 5 C 93 ALA ALA PHE GLN LYS LEU MET SER ASN LEU ASP SER ASN SEQRES 6 C 93 ARG ASP ASN GLU VAL ASP PHE GLN GLU TYR CYS VAL PHE SEQRES 7 C 93 LEU SER CYS ILE ALA MET MET CYS ASN GLU PHE PHE GLU SEQRES 8 C 93 GLY PHE SEQRES 1 D 93 MET ALA CYS PRO LEU GLU LYS ALA LEU ASP VAL MET VAL SEQRES 2 D 93 SER THR PHE HIS LYS TYR SER GLY LYS GLU GLY ASP LYS SEQRES 3 D 93 PHE LYS LEU ASN LYS SER GLU LEU LYS GLU LEU LEU THR SEQRES 4 D 93 ARG GLU LEU PRO SER PHE LEU GLY LYS ARG THR ASP GLU SEQRES 5 D 93 ALA ALA PHE GLN LYS LEU MET SER ASN LEU ASP SER ASN SEQRES 6 D 93 ARG ASP ASN GLU VAL ASP PHE GLN GLU TYR CYS VAL PHE SEQRES 7 D 93 LEU SER CYS ILE ALA MET MET CYS ASN GLU PHE PHE GLU SEQRES 8 D 93 GLY PHE HET CA A 101 1 HET CA A 102 1 HET CA B 101 1 HET CA B 102 1 HET CA C 101 1 HET CA C 102 1 HET CA D 101 1 HET CA D 102 1 HETNAM CA CALCIUM ION FORMUL 5 CA 8(CA 2+) FORMUL 13 HOH *16(H2 O) HELIX 1 1 CYS A 3 GLY A 21 1 19 HELIX 2 2 ASN A 30 LEU A 42 1 13 HELIX 3 3 PRO A 43 LEU A 46 5 4 HELIX 4 4 ASP A 51 ASP A 63 1 13 HELIX 5 5 PHE A 72 CYS A 86 1 15 HELIX 6 6 PRO B 4 GLY B 21 1 18 HELIX 7 7 ASN B 30 LEU B 42 1 13 HELIX 8 8 PRO B 43 LEU B 46 5 4 HELIX 9 9 ASP B 51 ASP B 63 1 13 HELIX 10 10 PHE B 72 ASN B 87 1 16 HELIX 11 11 PRO C 4 GLY C 21 1 18 HELIX 12 12 ASN C 30 LEU C 42 1 13 HELIX 13 13 PRO C 43 LEU C 46 5 4 HELIX 14 14 ASP C 51 ASP C 63 1 13 HELIX 15 15 ASP C 71 CYS C 86 1 16 HELIX 16 16 PRO D 4 GLY D 21 1 18 HELIX 17 17 ASN D 30 GLU D 41 1 12 HELIX 18 18 LEU D 42 LEU D 46 5 5 HELIX 19 19 ASP D 51 ASP D 63 1 13 HELIX 20 20 PHE D 72 GLU D 88 1 17 SHEET 1 A 2 LYS A 28 LEU A 29 0 SHEET 2 A 2 VAL A 70 ASP A 71 -1 O VAL A 70 N LEU A 29 SHEET 1 B 2 LYS B 28 LEU B 29 0 SHEET 2 B 2 VAL B 70 ASP B 71 -1 O VAL B 70 N LEU B 29 SHEET 1 C 2 LYS D 28 LEU D 29 0 SHEET 2 C 2 VAL D 70 ASP D 71 -1 O VAL D 70 N LEU D 29 LINK O SER A 20 CA CA A 101 1555 1555 2.43 LINK O GLU A 23 CA CA A 101 1555 1555 2.67 LINK O ASP A 25 CA CA A 101 1555 1555 2.19 LINK O LYS A 28 CA CA A 101 1555 1555 2.15 LINK OE1 GLU A 33 CA CA A 101 1555 1555 2.45 LINK OE2 GLU A 33 CA CA A 101 1555 1555 2.79 LINK OD1 ASP A 63 CA CA A 102 1555 1555 2.62 LINK OD1 ASN A 65 CA CA A 102 1555 1555 2.34 LINK OD1 ASP A 67 CA CA A 102 1555 1555 2.22 LINK O GLU A 69 CA CA A 102 1555 1555 2.31 LINK OE1 GLU A 74 CA CA A 102 1555 1555 2.49 LINK OE2 GLU A 74 CA CA A 102 1555 1555 2.49 LINK CA CA A 101 O HOH A 201 1555 1555 2.20 LINK CA CA A 102 O HOH A 202 1555 1555 2.37 LINK O SER B 20 CA CA B 101 1555 1555 2.68 LINK O GLU B 23 CA CA B 101 1555 1555 2.46 LINK O ASP B 25 CA CA B 101 1555 1555 2.37 LINK O LYS B 28 CA CA B 101 1555 1555 2.41 LINK OE1 GLU B 33 CA CA B 101 1555 1555 2.41 LINK OE2 GLU B 33 CA CA B 101 1555 1555 2.97 LINK OD1 ASP B 63 CA CA B 102 1555 1555 2.23 LINK OD1 ASN B 65 CA CA B 102 1555 1555 2.15 LINK OD1 ASP B 67 CA CA B 102 1555 1555 2.28 LINK O GLU B 69 CA CA B 102 1555 1555 2.12 LINK OE1 GLU B 74 CA CA B 102 1555 1555 2.37 LINK OE2 GLU B 74 CA CA B 102 1555 1555 2.50 LINK CA CA B 102 O HOH B 202 1555 1555 2.12 LINK O SER C 20 CA CA C 101 1555 1555 2.44 LINK O GLU C 23 CA CA C 101 1555 1555 2.38 LINK O ASP C 25 CA CA C 101 1555 1555 2.33 LINK O LYS C 28 CA CA C 101 1555 1555 2.37 LINK OE1 GLU C 33 CA CA C 101 1555 1555 2.41 LINK OE2 GLU C 33 CA CA C 101 1555 1555 2.76 LINK OD1 ASP C 63 CA CA C 102 1555 1555 2.25 LINK OD1 ASN C 65 CA CA C 102 1555 1555 2.19 LINK OD1 ASP C 67 CA CA C 102 1555 1555 2.55 LINK O GLU C 69 CA CA C 102 1555 1555 2.26 LINK OE1 GLU C 74 CA CA C 102 1555 1555 2.28 LINK OE2 GLU C 74 CA CA C 102 1555 1555 2.56 LINK CA CA C 102 O HOH C 202 1555 1555 2.15 LINK O SER D 20 CA CA D 101 1555 1555 2.50 LINK O GLU D 23 CA CA D 101 1555 1555 2.57 LINK O ASP D 25 CA CA D 101 1555 1555 2.31 LINK O LYS D 28 CA CA D 101 1555 1555 2.28 LINK OE1 GLU D 33 CA CA D 101 1555 1555 2.31 LINK OE2 GLU D 33 CA CA D 101 1555 1555 2.82 LINK OD1 ASP D 63 CA CA D 102 1555 1555 2.67 LINK OD1 ASN D 65 CA CA D 102 1555 1555 2.22 LINK OD1 ASP D 67 CA CA D 102 1555 1555 2.33 LINK O GLU D 69 CA CA D 102 1555 1555 2.12 LINK OE1 GLU D 74 CA CA D 102 1555 1555 2.45 LINK OE2 GLU D 74 CA CA D 102 1555 1555 2.88 SITE 1 AC1 6 SER A 20 GLU A 23 ASP A 25 LYS A 28 SITE 2 AC1 6 GLU A 33 HOH A 201 SITE 1 AC2 6 ASP A 63 ASN A 65 ASP A 67 GLU A 69 SITE 2 AC2 6 GLU A 74 HOH A 202 SITE 1 AC3 5 SER B 20 GLU B 23 ASP B 25 LYS B 28 SITE 2 AC3 5 GLU B 33 SITE 1 AC4 6 ASP B 63 ASN B 65 ASP B 67 GLU B 69 SITE 2 AC4 6 GLU B 74 HOH B 202 SITE 1 AC5 5 SER C 20 GLU C 23 ASP C 25 LYS C 28 SITE 2 AC5 5 GLU C 33 SITE 1 AC6 6 ASP C 63 ASN C 65 ASP C 67 GLU C 69 SITE 2 AC6 6 GLU C 74 HOH C 202 SITE 1 AC7 5 SER D 20 GLU D 23 ASP D 25 LYS D 28 SITE 2 AC7 5 GLU D 33 SITE 1 AC8 5 ASP D 63 ASN D 65 ASP D 67 GLU D 69 SITE 2 AC8 5 GLU D 74 CRYST1 28.802 34.356 95.313 95.49 95.29 114.82 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034720 0.016058 0.005663 0.00000 SCALE2 0.000000 0.032069 0.004820 0.00000 SCALE3 0.000000 0.000000 0.010655 0.00000