HEADER HYDROLASE 02-NOV-12 4HTY TITLE CRYSTAL STRUCTURE OF A METAGENOME-DERIVED CELLULASE CEL5A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS (ALPHA/BETA)8 BARREL, FAMILY 5 ENDOGLUCANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHUANG,K.H.LEE REVDAT 1 05-DEC-12 4HTY 0 JRNL AUTH N.ZHUANG,K.H.LEE JRNL TITL CRYSTAL STRUCTURE AND SUBSTRATE-BINDING MODE OF CELLULASE JRNL TITL 2 CEL5A FROM A METAGENOME LIBRARY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.12 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 55884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2974 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4094 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.1810 REMARK 3 BIN FREE R VALUE SET COUNT : 198 REMARK 3 BIN FREE R VALUE : 0.2030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2707 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 150 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.080 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.078 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.048 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.779 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.968 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2818 ; 0.041 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3825 ; 2.798 ; 1.917 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 6.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 146 ;38.528 ;23.836 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 441 ;15.459 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;19.431 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.295 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2206 ; 0.018 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1645 ; 1.978 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2661 ; 3.434 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1173 ; 4.970 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1164 ; 7.940 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 363 REMARK 3 ORIGIN FOR THE GROUP (A): 83.5485 60.5772 94.3150 REMARK 3 T TENSOR REMARK 3 T11: 0.0414 T22: 0.0353 REMARK 3 T33: 0.0483 T12: -0.0002 REMARK 3 T13: -0.0063 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 0.2520 L22: 0.3347 REMARK 3 L33: 0.5428 L12: -0.0938 REMARK 3 L13: 0.0986 L23: -0.2084 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -0.0093 S13: -0.0038 REMARK 3 S21: -0.0198 S22: -0.0374 S23: -0.0250 REMARK 3 S31: 0.0137 S32: -0.0195 S33: 0.0231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4HTY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-NOV-12. REMARK 100 THE RCSB ID CODE IS RCSB075916. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97916, 0.97933, 0.96394 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, MES PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 68.88550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.88550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 68.88550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.88550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 68.88550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 68.88550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 68.88550 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 68.88550 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 68.88550 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 68.88550 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 68.88550 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 68.88550 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 68.88550 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 68.88550 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 68.88550 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 68.88550 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 68.88550 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 68.88550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 807 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 5 REMARK 465 GLY A 6 REMARK 465 SER A 7 REMARK 465 SER A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 SER A 15 REMARK 465 SER A 16 REMARK 465 GLY A 17 REMARK 465 LEU A 18 REMARK 465 VAL A 19 REMARK 465 PRO A 20 REMARK 465 ARG A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 HIS A 24 REMARK 465 MSE A 25 REMARK 465 ASP A 26 REMARK 465 ASN A 27 REMARK 465 ALA A 28 REMARK 465 TRP A 29 REMARK 465 GLU A 30 REMARK 465 THR A 31 REMARK 465 THR A 32 REMARK 465 SER A 33 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 40 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 36 CE3 TRP A 36 CZ3 0.112 REMARK 500 GLU A 125 CG GLU A 125 CD 0.109 REMARK 500 TYR A 140 CE2 TYR A 140 CD2 0.091 REMARK 500 GLU A 154 CG GLU A 154 CD 0.127 REMARK 500 SER A 160 C SER A 160 O 0.138 REMARK 500 TYR A 161 CG TYR A 161 CD2 0.090 REMARK 500 GLU A 177 CB GLU A 177 CG -0.143 REMARK 500 GLU A 177 CG GLU A 177 CD -0.102 REMARK 500 ARG A 178 CB ARG A 178 CG -0.167 REMARK 500 TYR A 188 CD1 TYR A 188 CE1 0.104 REMARK 500 ALA A 207 CA ALA A 207 CB 0.130 REMARK 500 GLU A 208 CG GLU A 208 CD 0.136 REMARK 500 ALA A 211 CA ALA A 211 CB 0.130 REMARK 500 GLU A 215 CG GLU A 215 CD 0.090 REMARK 500 LYS A 226 CB LYS A 226 CG 0.165 REMARK 500 LYS A 226 CE LYS A 226 NZ 0.196 REMARK 500 PRO A 267 N PRO A 267 CA 0.158 REMARK 500 ARG A 274 CG ARG A 274 CD 0.166 REMARK 500 GLU A 289 CG GLU A 289 CD 0.099 REMARK 500 TYR A 310 CD1 TYR A 310 CE1 0.116 REMARK 500 GLU A 352 CG GLU A 352 CD 0.146 REMARK 500 ARG A 355 CG ARG A 355 CD 0.153 REMARK 500 MSE A 358 SE MSE A 358 CE -0.505 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 51 NE - CZ - NH2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 62 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 62 NE - CZ - NH1 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 62 NE - CZ - NH2 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 113 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG A 178 CG - CD - NE ANGL. DEV. = -16.0 DEGREES REMARK 500 LYS A 226 CB - CG - CD ANGL. DEV. = 16.7 DEGREES REMARK 500 ILE A 253 CB - CG1 - CD1 ANGL. DEV. = -16.9 DEGREES REMARK 500 PRO A 267 C - N - CA ANGL. DEV. = 15.1 DEGREES REMARK 500 PRO A 267 C - N - CD ANGL. DEV. = -13.9 DEGREES REMARK 500 ARG A 274 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 307 CB - CG - OD1 ANGL. DEV. = 8.0 DEGREES REMARK 500 ASP A 333 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 MSE A 358 CG - SE - CE ANGL. DEV. = 17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 39 -169.78 -163.21 REMARK 500 PHE A 197 60.53 34.97 REMARK 500 ASN A 246 73.69 -154.49 REMARK 500 PRO A 267 100.21 -60.00 REMARK 500 PHE A 276 -23.67 -153.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 38 SER A 39 146.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER A 39 23.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HU0 RELATED DB: PDB DBREF 4HTY A 26 363 UNP I6PLH5 I6PLH5_9BACT 26 363 SEQADV 4HTY MSE A 5 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY GLY A 6 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY SER A 7 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY SER A 8 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 9 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 10 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 11 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 12 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 13 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 14 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY SER A 15 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY SER A 16 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY GLY A 17 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY LEU A 18 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY VAL A 19 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY PRO A 20 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY ARG A 21 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY GLY A 22 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY SER A 23 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY HIS A 24 UNP I6PLH5 EXPRESSION TAG SEQADV 4HTY MSE A 25 UNP I6PLH5 EXPRESSION TAG SEQRES 1 A 359 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 359 LEU VAL PRO ARG GLY SER HIS MSE ASP ASN ALA TRP GLU SEQRES 3 A 359 THR THR SER GLY TRP TRP ASN ALA SER ASP ILE PRO ALA SEQRES 4 A 359 PHE ASP LYS SER LYS ILE THR ARG GLN LEU PRO LEU ILE SEQRES 5 A 359 LYS VAL GLU GLY ASN ARG PHE VAL ASP GLU GLN GLY LYS SEQRES 6 A 359 THR ILE VAL PHE ARG GLY VAL ASN ILE SER ASP PRO ASP SEQRES 7 A 359 LYS ILE ASP LYS ASP LYS ARG PHE SER LYS LYS HIS PHE SEQRES 8 A 359 GLU VAL ILE ARG SER TRP GLY ALA ASN VAL VAL ARG VAL SEQRES 9 A 359 PRO VAL HIS PRO ARG ALA TRP LYS GLU ARG GLY VAL LYS SEQRES 10 A 359 GLY TYR LEU GLU LEU LEU ASP GLN VAL VAL ALA TRP ASN SEQRES 11 A 359 ASN GLU LEU GLY ILE TYR THR ILE LEU ASP TRP HIS SER SEQRES 12 A 359 ILE GLY ASN LEU LYS SER GLU MSE PHE GLN ASN ASN SER SEQRES 13 A 359 TYR HIS THR THR LYS GLY GLU THR PHE ASP PHE TRP ARG SEQRES 14 A 359 ARG VAL SER GLU ARG TYR ASN GLY ILE ASN SER VAL ALA SEQRES 15 A 359 PHE TYR GLU ILE PHE ASN GLU PRO THR VAL PHE ASN GLY SEQRES 16 A 359 ARG LEU GLY ILE ALA THR TRP ALA GLU TRP LYS ALA ILE SEQRES 17 A 359 ASN GLU GLU ALA ILE THR ILE ILE GLN ALA HIS ASN PRO SEQRES 18 A 359 LYS ALA ILE ALA LEU VAL ALA GLY PHE ASN TRP ALA TYR SEQRES 19 A 359 ASP LEU LYS GLU ALA ALA ALA ASN PRO ILE ASP ARG GLN SEQRES 20 A 359 ASN ILE ALA TYR VAL SER HIS PRO TYR PRO GLN LYS VAL SEQRES 21 A 359 GLY ALA PRO TYR GLN ALA ASN TRP GLU ARG ASP PHE GLY SEQRES 22 A 359 PHE MSE ALA ASP LYS TYR PRO VAL PHE ALA THR GLU ILE SEQRES 23 A 359 GLY TYR GLN ARG ALA THR ASP LYS GLY ALA HIS ILE PRO SEQRES 24 A 359 VAL ILE ASP ASP GLY SER TYR GLY PRO ARG ILE THR ASP SEQRES 25 A 359 TYR PHE ASN SER LYS GLY ILE SER TRP VAL ALA TRP VAL SEQRES 26 A 359 PHE ASP PRO ASP TRP SER PRO GLN LEU PHE THR ASP TYR SEQRES 27 A 359 GLN THR TYR THR PRO THR MSE GLN GLY GLU HIS PHE ARG SEQRES 28 A 359 LYS VAL MSE LEU GLN ASP ASN LYS MODRES 4HTY MSE A 155 MET SELENOMETHIONINE MODRES 4HTY MSE A 279 MET SELENOMETHIONINE MODRES 4HTY MSE A 349 MET SELENOMETHIONINE MODRES 4HTY MSE A 358 MET SELENOMETHIONINE HET MSE A 155 8 HET MSE A 279 8 HET MSE A 349 8 HET MSE A 358 8 HET GOL A 601 6 HET GOL A 602 6 HET GOL A 603 6 HET GOL A 604 6 HET GOL A 605 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 GOL 5(C3 H8 O3) FORMUL 7 HOH *150(H2 O) HELIX 1 1 GLY A 34 ALA A 38 5 5 HELIX 2 2 ASP A 45 ILE A 49 5 5 HELIX 3 3 ASP A 80 ASP A 87 1 8 HELIX 4 4 SER A 91 TRP A 101 1 11 HELIX 5 5 HIS A 111 LEU A 137 1 27 HELIX 6 6 ASN A 158 HIS A 162 5 5 HELIX 7 7 THR A 164 TYR A 179 1 16 HELIX 8 8 VAL A 196 ARG A 200 5 5 HELIX 9 9 THR A 205 ASN A 224 1 20 HELIX 10 10 GLY A 233 TYR A 238 1 6 HELIX 11 11 LEU A 240 ASN A 246 1 7 HELIX 12 12 PRO A 267 PHE A 276 1 10 HELIX 13 13 GLY A 277 LYS A 282 5 6 HELIX 14 14 SER A 309 GLY A 322 1 14 HELIX 15 15 THR A 348 ASN A 362 1 15 SHEET 1 A 3 LYS A 57 GLU A 59 0 SHEET 2 A 3 ARG A 62 VAL A 64 -1 O VAL A 64 N LYS A 57 SHEET 3 A 3 THR A 70 ILE A 71 -1 O ILE A 71 N PHE A 63 SHEET 1 B 9 ARG A 74 ILE A 78 0 SHEET 2 B 9 VAL A 105 VAL A 110 1 O ARG A 107 N ILE A 78 SHEET 3 B 9 TYR A 140 TRP A 145 1 O ILE A 142 N VAL A 108 SHEET 4 B 9 VAL A 185 GLU A 189 1 O GLU A 189 N LEU A 143 SHEET 5 B 9 ILE A 228 ALA A 232 1 O ILE A 228 N TYR A 188 SHEET 6 B 9 ILE A 253 VAL A 256 1 O ALA A 254 N ALA A 229 SHEET 7 B 9 VAL A 285 ILE A 290 1 O PHE A 286 N TYR A 255 SHEET 8 B 9 SER A 324 PHE A 330 1 O SER A 324 N ALA A 287 SHEET 9 B 9 ARG A 74 ILE A 78 1 N ASN A 77 O PHE A 330 SHEET 1 C 3 MSE A 155 PHE A 156 0 SHEET 2 C 3 ILE A 148 ASN A 150 -1 N ASN A 150 O MSE A 155 SHEET 3 C 3 GLU A 193 PRO A 194 1 O GLU A 193 N GLY A 149 LINK C GLU A 154 N MSE A 155 1555 1555 1.35 LINK C MSE A 155 N PHE A 156 1555 1555 1.33 LINK C PHE A 278 N MSE A 279 1555 1555 1.34 LINK C MSE A 279 N ALA A 280 1555 1555 1.34 LINK C THR A 348 N MSE A 349 1555 1555 1.32 LINK C MSE A 349 N GLN A 350 1555 1555 1.35 LINK C VAL A 357 N MSE A 358 1555 1555 1.32 LINK C MSE A 358 N LEU A 359 1555 1555 1.32 CISPEP 1 ALA A 266 PRO A 267 0 -11.48 CISPEP 2 ILE A 302 PRO A 303 0 9.98 CISPEP 3 TRP A 328 VAL A 329 0 2.04 CISPEP 4 SER A 335 PRO A 336 0 -3.60 SITE 1 AC1 5 HIS A 111 HIS A 146 TYR A 161 HOH A 817 SITE 2 AC1 5 HOH A 848 SITE 1 AC2 6 ARG A 99 ASN A 104 LEU A 137 GLY A 138 SITE 2 AC2 6 HOH A 746 HOH A 833 SITE 1 AC3 8 THR A 195 VAL A 196 PHE A 197 ASN A 198 SITE 2 AC3 8 PHE A 234 ASN A 235 TRP A 236 HOH A 820 SITE 1 AC4 3 TRP A 236 LYS A 263 HOH A 849 SITE 1 AC5 7 TYR A 260 GLU A 289 HIS A 301 PRO A 303 SITE 2 AC5 7 TRP A 328 SER A 335 HOH A 848 CRYST1 137.771 137.771 137.771 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007258 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007258 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007258 0.00000