HEADER UNKNOWN FUNCTION 06-NOV-12 4HVJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS IN COMPLEX WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: MT2234.1, RV2179C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, MYCOBACTERIUM TUBERCULOSIS, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, ADENOSINE KEYWDS 3 MONOPHOSPHATE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 20-SEP-23 4HVJ 1 REMARK SEQADV LINK REVDAT 3 12-FEB-14 4HVJ 1 JRNL REVDAT 2 18-DEC-13 4HVJ 1 JRNL REVDAT 1 28-NOV-12 4HVJ 0 JRNL AUTH J.ABENDROTH,A.OLLODART,E.S.ANDREWS,P.J.MYLER,B.L.STAKER, JRNL AUTH 2 T.E.EDWARDS,V.L.ARCUS,C.GRUNDNER JRNL TITL MYCOBACTERIUM TUBERCULOSIS RV2179C PROTEIN ESTABLISHES A NEW JRNL TITL 2 EXORIBONUCLEASE FAMILY WITH BROAD PHYLOGENETIC DISTRIBUTION. JRNL REF J.BIOL.CHEM. V. 289 2139 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24311791 JRNL DOI 10.1074/JBC.M113.525683 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 20630 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1058 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1343 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.01 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2567 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 167 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.73000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 1.32000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.925 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2734 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2502 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3750 ; 1.518 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5744 ; 0.801 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 334 ; 5.595 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 136 ;27.553 ;21.985 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;13.619 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.846 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 403 ; 0.081 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3073 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 662 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 159 REMARK 3 RESIDUE RANGE : A 300 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4920 16.8320 81.1820 REMARK 3 T TENSOR REMARK 3 T11: 0.0402 T22: 0.0418 REMARK 3 T33: 0.0041 T12: 0.0020 REMARK 3 T13: -0.0093 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.3673 L22: 0.7760 REMARK 3 L33: 0.8170 L12: 0.0889 REMARK 3 L13: -0.2110 L23: -0.4776 REMARK 3 S TENSOR REMARK 3 S11: 0.0433 S12: 0.0027 S13: 0.0018 REMARK 3 S21: -0.0680 S22: -0.0315 S23: 0.0099 REMARK 3 S31: -0.0185 S32: -0.0519 S33: -0.0118 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 162 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2340 1.5860 99.0150 REMARK 3 T TENSOR REMARK 3 T11: 0.0462 T22: 0.0929 REMARK 3 T33: 0.0125 T12: -0.0458 REMARK 3 T13: -0.0173 T23: 0.0260 REMARK 3 L TENSOR REMARK 3 L11: 0.1791 L22: 0.6431 REMARK 3 L33: 0.6540 L12: -0.1426 REMARK 3 L13: -0.2172 L23: -0.1951 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.0370 S13: -0.0327 REMARK 3 S21: 0.0502 S22: -0.0455 S23: 0.0121 REMARK 3 S31: -0.0268 S32: -0.0026 S33: 0.0229 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4HVJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : RIGAKU VARIMAX REMARK 200 OPTICS : RIGAKU VARIMAX REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20675 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.8700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4HEC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMBIO JCSG+ G1 OPT: 25% JEFFAMINE REMARK 280 ED2003 PH 7.0, 100MM HEPES PH 7.0; MYTUD.18400.A.A1.PS01434 AT REMARK 280 25.6MG/M, SOAK AND CRYO: 35% JEFFAMINE ED2003, 100MM HEPES PH REMARK 280 7.0, 2.5M AMP, 2.5MM MGCL2 FOR 1 HOUR, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.26000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.88500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.12500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.88500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.26000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.12500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 ARG A 136 REMARK 465 PRO A 137 REMARK 465 ARG A 138 REMARK 465 ASP A 139 REMARK 465 THR A 160 REMARK 465 ASP A 161 REMARK 465 ASP A 162 REMARK 465 ALA A 163 REMARK 465 GLY A 164 REMARK 465 ARG A 165 REMARK 465 GLY A 166 REMARK 465 ALA A 167 REMARK 465 ALA A 168 REMARK 465 ARG A 169 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 MET B -12 REMARK 465 GLY B -11 REMARK 465 THR B -10 REMARK 465 LEU B -9 REMARK 465 GLU B -8 REMARK 465 ALA B -7 REMARK 465 GLN B -6 REMARK 465 THR B -5 REMARK 465 GLN B -4 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 ALA B 163 REMARK 465 GLY B 164 REMARK 465 ARG B 165 REMARK 465 GLY B 166 REMARK 465 ALA B 167 REMARK 465 ALA B 168 REMARK 465 ARG B 169 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ARG A 43 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 62 CG CD OE1 NE2 REMARK 470 GLN A 68 CG CD OE1 NE2 REMARK 470 VAL A 140 CG1 CG2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 42 CG CD OE1 OE2 REMARK 470 GLN B 62 CG CD OE1 NE2 REMARK 470 ARG B 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 136 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 138 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 139 CG OD1 OD2 REMARK 470 VAL B 140 CG1 CG2 REMARK 470 HIS B 141 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 162 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 15 -57.41 -122.75 REMARK 500 HIS A 141 56.19 -117.88 REMARK 500 HIS B 15 -52.75 -129.85 REMARK 500 ALA B 94 -106.06 37.31 REMARK 500 THR B 160 175.59 -54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 AMP A 300 O2P 95.2 REMARK 620 3 HOH A 401 O 82.4 97.4 REMARK 620 4 HOH A 402 O 92.0 83.7 174.3 REMARK 620 5 HOH A 403 O 91.0 171.9 88.6 90.8 REMARK 620 6 HOH A 475 O 169.9 76.7 92.8 92.9 97.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD1 REMARK 620 2 THR B 8 O 84.3 REMARK 620 3 ASP B 96 OD1 79.5 79.7 REMARK 620 4 HOH B 474 O 154.0 101.4 126.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4HEC RELATED DB: PDB REMARK 900 NATIVE STRUCTURE REMARK 900 RELATED ID: SSGCID-MYTUD.18400.A RELATED DB: TARGETTRACK DBREF 4HVJ A 3 169 UNP O53513 O53513_MYCTU 2 168 DBREF 4HVJ B 3 169 UNP O53513 O53513_MYCTU 2 168 SEQADV 4HVJ MET A -20 UNP O53513 EXPRESSION TAG SEQADV 4HVJ ALA A -19 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -18 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -17 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -16 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -15 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -14 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS A -13 UNP O53513 EXPRESSION TAG SEQADV 4HVJ MET A -12 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY A -11 UNP O53513 EXPRESSION TAG SEQADV 4HVJ THR A -10 UNP O53513 EXPRESSION TAG SEQADV 4HVJ LEU A -9 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLU A -8 UNP O53513 EXPRESSION TAG SEQADV 4HVJ ALA A -7 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLN A -6 UNP O53513 EXPRESSION TAG SEQADV 4HVJ THR A -5 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLN A -4 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY A -3 UNP O53513 EXPRESSION TAG SEQADV 4HVJ PRO A -2 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY A -1 UNP O53513 EXPRESSION TAG SEQADV 4HVJ SER A 0 UNP O53513 EXPRESSION TAG SEQADV 4HVJ MET A 1 UNP O53513 EXPRESSION TAG SEQADV 4HVJ VAL A 2 UNP O53513 EXPRESSION TAG SEQADV 4HVJ MET B -20 UNP O53513 EXPRESSION TAG SEQADV 4HVJ ALA B -19 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -18 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -17 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -16 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -15 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -14 UNP O53513 EXPRESSION TAG SEQADV 4HVJ HIS B -13 UNP O53513 EXPRESSION TAG SEQADV 4HVJ MET B -12 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY B -11 UNP O53513 EXPRESSION TAG SEQADV 4HVJ THR B -10 UNP O53513 EXPRESSION TAG SEQADV 4HVJ LEU B -9 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLU B -8 UNP O53513 EXPRESSION TAG SEQADV 4HVJ ALA B -7 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLN B -6 UNP O53513 EXPRESSION TAG SEQADV 4HVJ THR B -5 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLN B -4 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY B -3 UNP O53513 EXPRESSION TAG SEQADV 4HVJ PRO B -2 UNP O53513 EXPRESSION TAG SEQADV 4HVJ GLY B -1 UNP O53513 EXPRESSION TAG SEQADV 4HVJ SER B 0 UNP O53513 EXPRESSION TAG SEQADV 4HVJ MET B 1 UNP O53513 EXPRESSION TAG SEQADV 4HVJ VAL B 2 UNP O53513 EXPRESSION TAG SEQRES 1 A 190 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 190 ALA GLN THR GLN GLY PRO GLY SER MET VAL ARG TYR PHE SEQRES 3 A 190 TYR ASP THR GLU PHE ILE GLU ASP GLY HIS THR ILE GLU SEQRES 4 A 190 LEU ILE SER ILE GLY VAL VAL ALA GLU ASP GLY ARG GLU SEQRES 5 A 190 TYR TYR ALA VAL SER THR GLU PHE ASP PRO GLU ARG ALA SEQRES 6 A 190 GLY SER TRP VAL ARG THR HIS VAL LEU PRO LYS LEU PRO SEQRES 7 A 190 PRO PRO ALA SER GLN LEU TRP ARG SER ARG GLN GLN ILE SEQRES 8 A 190 ARG LEU ASP LEU GLU GLU PHE LEU ARG ILE ASP GLY THR SEQRES 9 A 190 ASP SER ILE GLU LEU TRP ALA TRP VAL GLY ALA TYR ASP SEQRES 10 A 190 HIS VAL ALA LEU CYS GLN LEU TRP GLY PRO MET THR ALA SEQRES 11 A 190 LEU PRO PRO THR VAL PRO ARG PHE THR ARG GLU LEU ARG SEQRES 12 A 190 GLN LEU TRP GLU ASP ARG GLY CYS PRO ARG MET PRO PRO SEQRES 13 A 190 ARG PRO ARG ASP VAL HIS ASP ALA LEU VAL ASP ALA ARG SEQRES 14 A 190 ASP GLN LEU ARG ARG PHE ARG LEU ILE THR SER THR ASP SEQRES 15 A 190 ASP ALA GLY ARG GLY ALA ALA ARG SEQRES 1 B 190 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 B 190 ALA GLN THR GLN GLY PRO GLY SER MET VAL ARG TYR PHE SEQRES 3 B 190 TYR ASP THR GLU PHE ILE GLU ASP GLY HIS THR ILE GLU SEQRES 4 B 190 LEU ILE SER ILE GLY VAL VAL ALA GLU ASP GLY ARG GLU SEQRES 5 B 190 TYR TYR ALA VAL SER THR GLU PHE ASP PRO GLU ARG ALA SEQRES 6 B 190 GLY SER TRP VAL ARG THR HIS VAL LEU PRO LYS LEU PRO SEQRES 7 B 190 PRO PRO ALA SER GLN LEU TRP ARG SER ARG GLN GLN ILE SEQRES 8 B 190 ARG LEU ASP LEU GLU GLU PHE LEU ARG ILE ASP GLY THR SEQRES 9 B 190 ASP SER ILE GLU LEU TRP ALA TRP VAL GLY ALA TYR ASP SEQRES 10 B 190 HIS VAL ALA LEU CYS GLN LEU TRP GLY PRO MET THR ALA SEQRES 11 B 190 LEU PRO PRO THR VAL PRO ARG PHE THR ARG GLU LEU ARG SEQRES 12 B 190 GLN LEU TRP GLU ASP ARG GLY CYS PRO ARG MET PRO PRO SEQRES 13 B 190 ARG PRO ARG ASP VAL HIS ASP ALA LEU VAL ASP ALA ARG SEQRES 14 B 190 ASP GLN LEU ARG ARG PHE ARG LEU ILE THR SER THR ASP SEQRES 15 B 190 ASP ALA GLY ARG GLY ALA ALA ARG HET AMP A 300 23 HET MG A 301 1 HET MG B 301 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 MG 2(MG 2+) FORMUL 6 HOH *167(H2 O) HELIX 1 1 ASP A 40 ALA A 44 5 5 HELIX 2 2 GLY A 45 VAL A 52 1 8 HELIX 3 3 LEU A 53 LEU A 56 5 4 HELIX 4 4 SER A 66 LEU A 78 1 13 HELIX 5 5 GLY A 93 GLN A 102 1 10 HELIX 6 6 PRO A 106 LEU A 110 5 5 HELIX 7 7 LEU A 121 ARG A 128 1 8 HELIX 8 8 ASP A 142 SER A 159 1 18 HELIX 9 9 ASP B 40 ALA B 44 5 5 HELIX 10 10 GLY B 45 VAL B 52 1 8 HELIX 11 11 LEU B 53 LEU B 56 5 4 HELIX 12 12 SER B 66 LEU B 78 1 13 HELIX 13 13 ALA B 94 GLN B 102 1 9 HELIX 14 14 LEU B 103 GLY B 105 5 3 HELIX 15 15 PRO B 106 LEU B 110 5 5 HELIX 16 16 LEU B 121 ARG B 128 1 8 HELIX 17 17 ASP B 142 SER B 159 1 18 SHEET 1 A 6 TRP A 64 ARG A 65 0 SHEET 2 A 6 GLU A 31 SER A 36 1 N VAL A 35 O ARG A 65 SHEET 3 A 6 ILE A 17 ALA A 26 -1 N VAL A 24 O TYR A 32 SHEET 4 A 6 MET A 1 GLU A 12 -1 N PHE A 5 O VAL A 25 SHEET 5 A 6 SER A 85 ALA A 90 1 O GLU A 87 N TYR A 4 SHEET 6 A 6 ARG A 119 GLU A 120 1 O ARG A 119 N LEU A 88 SHEET 1 B 6 TRP B 64 ARG B 65 0 SHEET 2 B 6 GLU B 31 SER B 36 1 N VAL B 35 O ARG B 65 SHEET 3 B 6 ILE B 17 ALA B 26 -1 N VAL B 24 O TYR B 32 SHEET 4 B 6 MET B 1 GLU B 12 -1 N PHE B 5 O VAL B 25 SHEET 5 B 6 SER B 85 ALA B 90 1 O GLU B 87 N VAL B 2 SHEET 6 B 6 ARG B 119 GLU B 120 1 O ARG B 119 N LEU B 88 LINK OD1 ASP A 7 MG MG A 301 1555 1555 2.03 LINK O2P AMP A 300 MG MG A 301 1555 1555 2.04 LINK MG MG A 301 O HOH A 401 1555 1555 2.02 LINK MG MG A 301 O HOH A 402 1555 1555 2.03 LINK MG MG A 301 O HOH A 403 1555 1555 2.16 LINK MG MG A 301 O HOH A 475 1555 1555 2.10 LINK OD1 ASP B 7 MG MG B 301 1555 1555 2.65 LINK O THR B 8 MG MG B 301 1555 1555 2.66 LINK OD1 ASP B 96 MG MG B 301 1555 1555 2.83 LINK MG MG B 301 O HOH B 474 1555 1555 2.51 SITE 1 AC1 14 ASP A 7 THR A 8 GLU A 9 PHE A 10 SITE 2 AC1 14 TRP A 47 VAL A 48 HIS A 141 MG A 301 SITE 3 AC1 14 HOH A 401 HOH A 402 HOH A 418 HOH A 475 SITE 4 AC1 14 MET B 107 THR B 108 SITE 1 AC2 6 ASP A 7 AMP A 300 HOH A 401 HOH A 402 SITE 2 AC2 6 HOH A 403 HOH A 475 SITE 1 AC3 4 ASP B 7 THR B 8 ASP B 96 HOH B 474 CRYST1 42.520 76.250 105.770 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023518 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013115 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009454 0.00000