HEADER HYDROLASE 07-NOV-12 4HVT TITLE STRUCTURE OF A POST-PROLINE CLEAVING ENZYME FROM RICKETTSIA TYPHI COMPND MOL_ID: 1; COMPND 2 MOLECULE: POST-PROLINE CLEAVING ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL TRUNCATION (UNP RESIDUES 19-720); COMPND 5 SYNONYM: RITYA.17583.B; COMPND 6 EC: 3.4.21.26; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA TYPHI; SOURCE 3 ORGANISM_TAXID: 257363; SOURCE 4 STRAIN: ATCC VR-144 / WILMINGTON; SOURCE 5 GENE: PPCE, RT0165; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RITYA.17583.B.B2 KEYWDS SSGCID, POST-PROLINE CLEAVING ENZYME, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, POST-PROLINE KEYWDS 3 CLEAVAGE PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 03-APR-24 4HVT 1 REMARK REVDAT 3 28-FEB-24 4HVT 1 REMARK SEQADV REVDAT 2 27-SEP-17 4HVT 1 REMARK REVDAT 1 28-NOV-12 4HVT 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,B.SANKARAN,D.FOX III,T.E.EDWARDS, JRNL AUTH 3 B.L.STAKER JRNL TITL STRUCTURE OF A POST-PROLINE CLEAVING ENZYME FROM RICKETTSIA JRNL TITL 2 TYPHI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 81804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4322 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5994 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 331 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 746 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.54000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.101 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.886 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5739 ; 0.015 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5324 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7804 ; 1.683 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12259 ; 0.850 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 712 ; 6.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;34.673 ;24.583 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 945 ;12.879 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;11.997 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 852 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6514 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1357 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 710 REMARK 3 RESIDUE RANGE : A 801 A 808 REMARK 3 ORIGIN FOR THE GROUP (A): 23.7250 61.6720 16.0530 REMARK 3 T TENSOR REMARK 3 T11: 0.0536 T22: 0.0092 REMARK 3 T33: 0.0850 T12: 0.0113 REMARK 3 T13: -0.0666 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4637 L22: 0.5290 REMARK 3 L33: 0.5823 L12: 0.0058 REMARK 3 L13: 0.2563 L23: -0.0524 REMARK 3 S TENSOR REMARK 3 S11: -0.0773 S12: -0.0259 S13: 0.0877 REMARK 3 S21: -0.0150 S22: 0.0270 S23: 0.0072 REMARK 3 S31: -0.0651 S32: -0.0668 S33: 0.0504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4HVT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-NOV-12. REMARK 100 THE DEPOSITION ID IS D_1000075982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-12; 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5; 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : ALS; ROTATING ANODE REMARK 200 BEAMLINE : 5.0.1; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774; 1.5418 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL, CYLINDRICALLY REMARK 200 BENT, SI(220); RIGAKU VARIMAX REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; RIGAKU SATURN REMARK 200 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 86126 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD, MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: AN INITIAL MODEL WAS OBTAINED FROM IODIDE SAD REMARK 200 PHASING USING CRYSTAL 2 (P21). THE INITIAL MODEL WAS THEN USED REMARK 200 AS SEARCH MODEL FOR C2 HIGH RESOLUTION DATA SET, CRYSTAL 1. REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MICROLYIC MCSG1 SCREEN B10: 24% PEG REMARK 280 4000, 20% GLYCEROL, 160MM MAGNESIUM CHLORIDE, 80MM TRIS:HCL PH REMARK 280 8.5; RITYA17583BB2.PS01616 AT 26.6MG/ML, CRYO: EG; SG C2; FOR REMARK 280 PHASING CRYSTAL 2 WAS USED SG P21, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K. MICROLYIC MCSG1 SCREEN C5: 20% PEG 3350, REMARK 280 200MM MAGNESIUM ACETATE; RITYA17583BB2.PS01616 AT 26.6MG/ML, FOR REMARK 280 PHASING A CRYSTAL WAS SOAKED IN RESERVOIR + 20% EG WITH 2.5M REMARK 280 SODIUM IODIDE (FINAL 500MM NAI) FOR 1 MINUTE, THIS SAMPLE IS REMARK 280 FROM A DIFFERET SPACE GROUP (P21) THAN CRYSTAL 1, PH 7.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 99.79500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.64000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 99.79500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.64000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1386 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 ALA A 10 REMARK 465 MET A 11 REMARK 465 GLU A 12 REMARK 465 ASP A 13 REMARK 465 ASN A 14 REMARK 465 ASN A 15 REMARK 465 LYS A 16 REMARK 465 GLN A 17 REMARK 465 ILE A 18 REMARK 465 PHE A 19 REMARK 465 ASN A 711 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 20 CG OD1 ND2 REMARK 470 LYS A 22 CG CD CE NZ REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 LYS A 25 CG CD CE NZ REMARK 470 VAL A 33 CG1 CG2 REMARK 470 GLU A 34 CG CD OE1 OE2 REMARK 470 GLU A 37 CG CD OE1 OE2 REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LYS A 45 CG CD CE NZ REMARK 470 LYS A 48 CG CD CE NZ REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 LYS A 57 CG CD CE NZ REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 LYS A 109 CG CD CE NZ REMARK 470 ASN A 111 CG OD1 ND2 REMARK 470 LYS A 123 CG CD CE NZ REMARK 470 ILE A 125 CG1 CG2 CD1 REMARK 470 LYS A 127 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 311 CG CD CE NZ REMARK 470 SER A 314 OG REMARK 470 ASN A 381 CG OD1 ND2 REMARK 470 LYS A 391 CG CD CE NZ REMARK 470 LYS A 433 CG CD CE NZ REMARK 470 LYS A 500 CG CD CE NZ REMARK 470 GLU A 525 CG CD OE1 OE2 REMARK 470 LEU A 634 CG CD1 CD2 REMARK 470 LYS A 637 CG CD CE NZ REMARK 470 LYS A 678 CG CD CE NZ REMARK 470 LYS A 689 CG CD CE NZ REMARK 470 LYS A 707 CG CD CE NZ REMARK 470 LYS A 709 CG CD CE NZ REMARK 470 ILE A 710 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 226 OE1 GLU A 228 2.06 REMARK 500 O HOH A 1286 O HOH A 1573 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 606 CB SER A 606 OG -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 LEU A 481 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 LEU A 593 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 687 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -166.63 -114.61 REMARK 500 VAL A 33 -83.58 -130.93 REMARK 500 ASP A 265 30.02 -142.19 REMARK 500 PHE A 266 -45.43 90.22 REMARK 500 LYS A 299 -133.20 50.72 REMARK 500 LYS A 313 -117.81 52.74 REMARK 500 ASN A 353 -69.45 -107.76 REMARK 500 PRO A 393 44.83 -86.46 REMARK 500 TYR A 485 -75.31 -125.77 REMARK 500 TRP A 504 -61.46 -95.74 REMARK 500 SER A 566 -122.24 65.29 REMARK 500 VAL A 590 58.79 32.56 REMARK 500 LEU A 593 -25.75 -155.52 REMARK 500 HIS A 653 139.10 87.67 REMARK 500 ASP A 679 13.07 -146.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 808 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-RITYA.17583.B RELATED DB: TARGETTRACK DBREF 4HVT A 10 711 UNP Q68XJ3 Q68XJ3_RICTY 19 720 SEQADV 4HVT MET A 1 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT ALA A 2 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 3 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 4 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 5 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 6 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 7 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT HIS A 8 UNP Q68XJ3 EXPRESSION TAG SEQADV 4HVT MET A 9 UNP Q68XJ3 EXPRESSION TAG SEQRES 1 A 711 MET ALA HIS HIS HIS HIS HIS HIS MET ALA MET GLU ASP SEQRES 2 A 711 ASN ASN LYS GLN ILE PHE ASN PRO LYS GLU THR LYS PHE SEQRES 3 A 711 LEU GLU GLU ALA GLU GLY VAL GLU ALA LEU GLU TRP ALA SEQRES 4 A 711 LYS GLU ARG THR SER LYS THR GLU LYS ALA LEU GLN ALA SEQRES 5 A 711 MET GLN GLU TYR LYS GLN ILE LYS LYS GLU ILE GLU THR SEQRES 6 A 711 ILE PHE TYR ASP GLN ARG LYS THR PRO TYR GLY VAL ILE SEQRES 7 A 711 ARG LYS GLY TYR VAL TYR ASN PHE TRP MET ASP ASP LYS SEQRES 8 A 711 ASN PRO GLN GLY LEU TRP ARG ARG THR LEU VAL ASP ASN SEQRES 9 A 711 TYR SER LYS ASP LYS PRO ASN TRP GLU VAL LEU ILE ASP SEQRES 10 A 711 PHE ASP LYS LEU SER LYS LYS ILE GLY LYS LYS VAL ALA SEQRES 11 A 711 TYR ARG GLY VAL SER ASN CYS PHE GLN ASN PRO ASN ARG SEQRES 12 A 711 TYR LEU ILE SER MET SER PHE GLY GLY LYS ASP GLU MET SEQRES 13 A 711 PHE PHE ARG GLU TRP ASP LEU GLU LYS LYS ASP PHE VAL SEQRES 14 A 711 LYS ASN GLY PHE GLU PRO ILE THR ASN SER GLY LYS LEU SEQRES 15 A 711 LEU GLU GLY LYS PHE THR TYR PRO THR TRP ILE ASN LYS SEQRES 16 A 711 ASP THR ILE ILE PHE ASN LEU VAL LEU HIS LYS ASN GLU SEQRES 17 A 711 ILE THR SER SER LEU TYR PRO ASN SER LEU TYR ILE TRP SEQRES 18 A 711 LYS ARG GLY GLU SER ILE GLU LYS ALA LYS LYS LEU PHE SEQRES 19 A 711 GLU VAL PRO LYS GLU TYR ILE TYR VAL SER ALA GLY LYS SEQRES 20 A 711 LEU LEU SER ASP THR ILE SER SER SER LEU ILE PHE ILE SEQRES 21 A 711 SER ALA ASN LYS ASP PHE TYR ASN TYR ASP ASN TYR ILE SEQRES 22 A 711 LEU ASP THR LYS TYR LYS ASN LEU LYS LEU GLN LYS ILE SEQRES 23 A 711 ASN MET PRO SER ASP ALA THR LEU GLN GLY SER PHE LYS SEQRES 24 A 711 GLU TYR VAL PHE TRP LEU LEU ARG SER ASP TRP LYS PHE SEQRES 25 A 711 LYS SER HIS ASN ILE LYS ALA GLY SER LEU VAL ALA LEU SEQRES 26 A 711 HIS PHE THR ASP LEU LEU LYS THR GLU SER ASP LYS THR SEQRES 27 A 711 SER LEU LYS ILE LEU PHE THR PRO THR ALA ASN GLU VAL SEQRES 28 A 711 PHE ASN PHE ILE SER THR THR LYS ASP ARG VAL PHE LEU SEQRES 29 A 711 ALA THR TYR ASP ASN VAL VAL ALA LYS VAL VAL THR PHE SEQRES 30 A 711 THR LEU GLU ASN GLU GLN TRP THR LYS PRO VAL VAL LEU SEQRES 31 A 711 LYS LEU PRO TYR GLN ASN ALA ILE PHE GLY MET SER SER SEQRES 32 A 711 TYR GLU GLU GLU GLU GLU ALA LEU ILE THR ILE GLU ASN SEQRES 33 A 711 SER ILE VAL PRO PRO THR ILE TYR LEU TRP VAL LYS THR SEQRES 34 A 711 HIS GLU LEU LYS ILE ILE ARG LYS ALA LEU TYR SER PHE SEQRES 35 A 711 ASP SER GLU ASN TYR VAL LEU GLU GLN LYS GLU ALA THR SEQRES 36 A 711 SER PHE ASP GLY VAL LYS ILE PRO TYR PHE LEU VAL TYR SEQRES 37 A 711 LYS LYS GLY ILE LYS PHE ASP GLY LYS ASN PRO THR LEU SEQRES 38 A 711 LEU GLU ALA TYR GLY GLY PHE GLN VAL ILE ASN ALA PRO SEQRES 39 A 711 TYR PHE SER ARG ILE LYS ASN GLU VAL TRP VAL LYS ASN SEQRES 40 A 711 ALA GLY VAL SER VAL LEU ALA ASN ILE ARG GLY GLY GLY SEQRES 41 A 711 GLU PHE GLY PRO GLU TRP HIS LYS SER ALA GLN GLY ILE SEQRES 42 A 711 LYS ARG GLN THR ALA PHE ASN ASP PHE PHE ALA VAL SER SEQRES 43 A 711 GLU GLU LEU ILE LYS GLN ASN ILE THR SER PRO GLU TYR SEQRES 44 A 711 LEU GLY ILE LYS GLY GLY SER ASN GLY GLY LEU LEU VAL SEQRES 45 A 711 SER VAL ALA MET THR GLN ARG PRO GLU LEU PHE GLY ALA SEQRES 46 A 711 VAL ALA CYS GLU VAL PRO ILE LEU ASP MET ILE ARG TYR SEQRES 47 A 711 LYS GLU PHE GLY ALA GLY HIS SER TRP VAL THR GLU TYR SEQRES 48 A 711 GLY ASP PRO GLU ILE PRO ASN ASP LEU LEU HIS ILE LYS SEQRES 49 A 711 LYS TYR ALA PRO LEU GLU ASN LEU SER LEU THR GLN LYS SEQRES 50 A 711 TYR PRO THR VAL LEU ILE THR ASP SER VAL LEU ASP GLN SEQRES 51 A 711 ARG VAL HIS PRO TRP HIS GLY ARG ILE PHE GLU TYR VAL SEQRES 52 A 711 LEU ALA GLN ASN PRO ASN THR LYS THR TYR PHE LEU GLU SEQRES 53 A 711 SER LYS ASP SER GLY HIS GLY SER GLY SER ASP LEU LYS SEQRES 54 A 711 GLU SER ALA ASN TYR PHE ILE ASN LEU TYR THR PHE PHE SEQRES 55 A 711 ALA ASN ALA LEU LYS LEU LYS ILE ASN HET EDO A 801 4 HET EDO A 802 4 HET EDO A 803 4 HET EDO A 804 4 HET EDO A 805 4 HET EDO A 806 4 HET CL A 807 1 HET CL A 808 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 6(C2 H6 O2) FORMUL 8 CL 2(CL 1-) FORMUL 10 HOH *746(H2 O) HELIX 1 1 ASN A 20 LYS A 25 1 6 HELIX 2 2 PHE A 26 GLU A 29 5 4 HELIX 3 3 VAL A 33 ALA A 52 1 20 HELIX 4 4 GLU A 55 TYR A 68 1 14 HELIX 5 5 VAL A 102 SER A 106 1 5 HELIX 6 6 PHE A 118 GLY A 126 1 9 HELIX 7 7 SER A 226 ALA A 230 5 5 HELIX 8 8 THR A 328 LYS A 332 5 5 HELIX 9 9 THR A 333 LYS A 337 5 5 HELIX 10 10 ASP A 443 GLU A 445 5 3 HELIX 11 11 SER A 497 TRP A 504 1 8 HELIX 12 12 VAL A 505 ALA A 508 5 4 HELIX 13 13 GLY A 523 SER A 529 1 7 HELIX 14 14 ALA A 530 LYS A 534 5 5 HELIX 15 15 ARG A 535 GLN A 552 1 18 HELIX 16 16 SER A 556 GLU A 558 5 3 HELIX 17 17 ASN A 567 ARG A 579 1 13 HELIX 18 18 PRO A 580 PHE A 583 5 4 HELIX 19 19 ARG A 597 PHE A 601 5 5 HELIX 20 20 ALA A 603 SER A 606 5 4 HELIX 21 21 TRP A 607 GLY A 612 1 6 HELIX 22 22 ILE A 616 ALA A 627 1 12 HELIX 23 23 PRO A 628 ASN A 631 5 4 HELIX 24 24 PRO A 654 ALA A 665 1 12 HELIX 25 25 ASP A 687 LYS A 707 1 21 SHEET 1 A 4 VAL A 77 ARG A 79 0 SHEET 2 A 4 TYR A 82 TRP A 87 -1 O TYR A 84 N VAL A 77 SHEET 3 A 4 LEU A 96 LEU A 101 -1 O THR A 100 N VAL A 83 SHEET 4 A 4 GLU A 113 ASP A 117 -1 O LEU A 115 N TRP A 97 SHEET 1 B 4 VAL A 129 ASN A 136 0 SHEET 2 B 4 ARG A 143 PHE A 150 -1 O SER A 149 N ALA A 130 SHEET 3 B 4 GLU A 155 ASP A 162 -1 O ARG A 159 N ILE A 146 SHEET 4 B 4 ASP A 167 PHE A 168 -1 O ASP A 167 N ASP A 162 SHEET 1 C 4 VAL A 129 ASN A 136 0 SHEET 2 C 4 ARG A 143 PHE A 150 -1 O SER A 149 N ALA A 130 SHEET 3 C 4 GLU A 155 ASP A 162 -1 O ARG A 159 N ILE A 146 SHEET 4 C 4 GLY A 185 LYS A 186 -1 O GLY A 185 N MET A 156 SHEET 1 D 4 PRO A 190 ASN A 194 0 SHEET 2 D 4 THR A 197 PHE A 200 -1 O THR A 197 N ILE A 193 SHEET 3 D 4 SER A 217 LYS A 222 -1 O TRP A 221 N ILE A 198 SHEET 4 D 4 LYS A 231 GLU A 235 -1 O LEU A 233 N LEU A 218 SHEET 1 E 4 TYR A 242 LYS A 247 0 SHEET 2 E 4 LEU A 257 ASN A 263 -1 O PHE A 259 N GLY A 246 SHEET 3 E 4 TYR A 269 ASP A 275 -1 O LEU A 274 N ILE A 258 SHEET 4 E 4 LYS A 282 LYS A 285 -1 O GLN A 284 N ILE A 273 SHEET 1 F 4 THR A 293 PHE A 298 0 SHEET 2 F 4 TYR A 301 LEU A 305 -1 O PHE A 303 N GLN A 295 SHEET 3 F 4 LEU A 322 HIS A 326 -1 O VAL A 323 N TRP A 304 SHEET 4 F 4 LYS A 341 PHE A 344 -1 O LYS A 341 N ALA A 324 SHEET 1 G 2 TRP A 310 PHE A 312 0 SHEET 2 G 2 HIS A 315 ILE A 317 -1 O ILE A 317 N TRP A 310 SHEET 1 H 4 GLU A 350 THR A 357 0 SHEET 2 H 4 VAL A 362 ASP A 368 -1 O PHE A 363 N SER A 356 SHEET 3 H 4 VAL A 371 PHE A 377 -1 O LYS A 373 N THR A 366 SHEET 4 H 4 VAL A 388 LEU A 390 -1 O LEU A 390 N VAL A 374 SHEET 1 I 2 LEU A 379 GLU A 380 0 SHEET 2 I 2 GLN A 383 TRP A 384 -1 O GLN A 383 N GLU A 380 SHEET 1 J 4 ILE A 398 SER A 402 0 SHEET 2 J 4 ALA A 410 GLU A 415 -1 O THR A 413 N GLY A 400 SHEET 3 J 4 THR A 422 TRP A 426 -1 O TYR A 424 N ILE A 412 SHEET 4 J 4 LEU A 432 ARG A 436 -1 O LYS A 433 N LEU A 425 SHEET 1 K 8 TYR A 447 THR A 455 0 SHEET 2 K 8 LYS A 461 LYS A 469 -1 O TYR A 464 N LYS A 452 SHEET 3 K 8 VAL A 510 ALA A 514 -1 O LEU A 513 N PHE A 465 SHEET 4 K 8 THR A 480 GLU A 483 1 N LEU A 481 O VAL A 512 SHEET 5 K 8 LEU A 560 GLY A 565 1 O GLY A 561 N THR A 480 SHEET 6 K 8 ALA A 585 GLU A 589 1 O GLU A 589 N GLY A 564 SHEET 7 K 8 THR A 640 SER A 646 1 O LEU A 642 N VAL A 586 SHEET 8 K 8 THR A 672 SER A 677 1 O TYR A 673 N ILE A 643 SITE 1 AC1 10 ASN A 171 GLY A 172 PHE A 173 TRP A 221 SITE 2 AC1 10 LYS A 222 ARG A 223 GLY A 224 GLU A 225 SITE 3 AC1 10 LYS A 386 HOH A1114 SITE 1 AC2 6 THR A 73 ASN A 85 PHE A 86 TRP A 87 SITE 2 AC2 6 MET A 88 HOH A1376 SITE 1 AC3 6 ASN A 349 GLU A 453 LYS A 461 PHE A 522 SITE 2 AC3 6 HOH A1026 HOH A1640 SITE 1 AC4 7 LEU A 213 PHE A 601 GLY A 602 HIS A 653 SITE 2 AC4 7 HOH A1117 HOH A1371 HOH A1586 SITE 1 AC5 4 LEU A 432 ILE A 434 HOH A 937 HOH A1013 SITE 1 AC6 2 TYR A 75 GLU A 415 SITE 1 AC7 4 ARG A 79 TYR A 84 TRP A 97 HOH A1645 SITE 1 AC8 2 ARG A 143 ARG A 223 CRYST1 199.590 73.280 55.460 90.00 98.52 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005010 0.000000 0.000751 0.00000 SCALE2 0.000000 0.013646 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018232 0.00000