HEADER CHAPERONE, PEPTIDE BINDING PROTEIN 13-NOV-12 4HY9 TITLE CRYSTAL STRUCTURE OF THE SUBSTRATE BINDING DOMAIN OF E.COLI DNAK IN TITLE 2 COMPLEX WITH PYRRHOCORICIN_LYZZ (RESIDUES 1 TO 11) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAPERONE PROTEIN DNAK; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 389-607; COMPND 5 SYNONYM: HSP70, HEAT SHOCK 70 KDA PROTEIN, HEAT SHOCK PROTEIN 70; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PYRRHOCORICIN; COMPND 9 CHAIN: C, D; COMPND 10 FRAGMENT: UNP RESIDUES 1-11; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DNAK, GROP, GRPF, SEG, B0014, JW0013; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: PYRRHOCORIS APTERUS; SOURCE 11 ORGANISM_TAXID: 37000; SOURCE 12 OTHER_DETAILS: PYRRHOCORICIN OCCURS NATURALLY IN PYRRHOCORIS SOURCE 13 APTERUS. KEYWDS CHAPERONE, ANTIMICROBIAL PEPTIDES, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.ZAHN,N.STRAETER REVDAT 3 15-NOV-17 4HY9 1 REMARK REVDAT 2 17-JUL-13 4HY9 1 JRNL REVDAT 1 17-APR-13 4HY9 0 JRNL AUTH M.ZAHN,N.BERTHOLD,B.KIESLICH,D.KNAPPE,R.HOFFMANN,N.STRATER JRNL TITL STRUCTURAL STUDIES ON THE FORWARD AND REVERSE BINDING MODES JRNL TITL 2 OF PEPTIDES TO THE CHAPERONE DNAK. JRNL REF J.MOL.BIOL. V. 425 2463 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23562829 JRNL DOI 10.1016/J.JMB.2013.03.041 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 80303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1624 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5870 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 109 REMARK 3 BIN FREE R VALUE : 0.3790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3400 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 386 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -0.76000 REMARK 3 B33 (A**2) : 2.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.024 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3501 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4736 ; 2.340 ; 1.992 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 456 ; 5.453 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;39.052 ;26.581 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 661 ;15.517 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.253 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 562 ; 0.199 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2558 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 389 A 516 REMARK 3 ORIGIN FOR THE GROUP (A): -30.8459 36.5216 -22.0234 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.0988 REMARK 3 T33: 0.0046 T12: 0.0015 REMARK 3 T13: -0.0016 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.8411 L22: 0.2377 REMARK 3 L33: 0.0783 L12: -0.0843 REMARK 3 L13: -0.2173 L23: -0.0461 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0048 S13: 0.0587 REMARK 3 S21: 0.0049 S22: 0.0265 S23: -0.0082 REMARK 3 S31: 0.0129 S32: -0.0156 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 517 A 551 REMARK 3 ORIGIN FOR THE GROUP (A): -40.6899 20.8979 -13.0474 REMARK 3 T TENSOR REMARK 3 T11: 0.0925 T22: 0.0854 REMARK 3 T33: 0.0415 T12: -0.0088 REMARK 3 T13: 0.0120 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 8.2017 L22: 0.3444 REMARK 3 L33: 2.1690 L12: -0.2263 REMARK 3 L13: -4.0131 L23: -0.0063 REMARK 3 S TENSOR REMARK 3 S11: 0.0853 S12: 0.0888 S13: 0.0820 REMARK 3 S21: -0.0171 S22: 0.0455 S23: 0.0433 REMARK 3 S31: -0.0788 S32: -0.1400 S33: -0.1308 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 552 A 601 REMARK 3 ORIGIN FOR THE GROUP (A): -54.5752 17.2702 -2.7931 REMARK 3 T TENSOR REMARK 3 T11: 0.0695 T22: 0.1679 REMARK 3 T33: 0.0545 T12: -0.0072 REMARK 3 T13: 0.0134 T23: 0.0725 REMARK 3 L TENSOR REMARK 3 L11: 5.4338 L22: 1.4309 REMARK 3 L33: 2.3360 L12: -0.4848 REMARK 3 L13: -2.0586 L23: -0.6941 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.1579 S13: 0.0532 REMARK 3 S21: 0.1556 S22: 0.2393 S23: 0.2333 REMARK 3 S31: -0.1067 S32: -0.3203 S33: -0.1971 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 389 B 508 REMARK 3 ORIGIN FOR THE GROUP (A): -11.3100 19.1820 -5.8113 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.0750 REMARK 3 T33: 0.0407 T12: -0.0008 REMARK 3 T13: -0.0052 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.3775 L22: 0.7691 REMARK 3 L33: 0.4468 L12: -0.1789 REMARK 3 L13: -0.2500 L23: 0.3944 REMARK 3 S TENSOR REMARK 3 S11: 0.0135 S12: -0.0680 S13: -0.0609 REMARK 3 S21: -0.0248 S22: 0.0154 S23: -0.1108 REMARK 3 S31: -0.0062 S32: 0.0193 S33: -0.0289 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 509 B 549 REMARK 3 ORIGIN FOR THE GROUP (A): -24.9143 9.5077 -6.6187 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.0730 REMARK 3 T33: 0.0495 T12: -0.0298 REMARK 3 T13: 0.0033 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 0.8086 L22: 1.8163 REMARK 3 L33: 0.2789 L12: -0.6039 REMARK 3 L13: -0.2332 L23: 0.4939 REMARK 3 S TENSOR REMARK 3 S11: -0.1098 S12: 0.0319 S13: -0.1544 REMARK 3 S21: 0.0127 S22: 0.0984 S23: 0.1465 REMARK 3 S31: 0.0039 S32: -0.0475 S33: 0.0113 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 550 B 603 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1876 -9.9842 -21.0321 REMARK 3 T TENSOR REMARK 3 T11: 0.1637 T22: 0.2859 REMARK 3 T33: 0.0675 T12: -0.1296 REMARK 3 T13: 0.0119 T23: -0.1040 REMARK 3 L TENSOR REMARK 3 L11: 2.9798 L22: 2.0672 REMARK 3 L33: 2.5122 L12: -0.1829 REMARK 3 L13: -0.6285 L23: 1.0515 REMARK 3 S TENSOR REMARK 3 S11: -0.2364 S12: 0.7013 S13: -0.2935 REMARK 3 S21: -0.2294 S22: 0.1965 S23: 0.1415 REMARK 3 S31: 0.0180 S32: 0.1004 S33: 0.0398 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4HY9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-12. REMARK 100 THE DEPOSITION ID IS D_1000076070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99188 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83099 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 24.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PDB ENTRY 3DPO REMARK 200 SOFTWARE USED: REFINED WITH PDB CODE 3DPO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 0.1 M CITRIC REMARK 280 ACID PH 4.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 38.70100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.06550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.70100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.06550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 SD MET B 469 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE PYRRHOCORICIN IS POLYPEPTIDE, A MEMBER OF ANTIMICROBIAL CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: PYRRHOCORICIN REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 602 REMARK 465 GLN A 603 REMARK 465 GLN A 604 REMARK 465 GLN A 605 REMARK 465 HIS A 606 REMARK 465 ALA A 607 REMARK 465 GLN B 604 REMARK 465 GLN B 605 REMARK 465 HIS B 606 REMARK 465 ALA B 607 REMARK 465 VAL C 1 REMARK 465 ASP C 2 REMARK 465 LYS C 3 REMARK 465 VAL D 1 REMARK 465 ASP D 2 REMARK 465 LYS D 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR C 12 CA C O CB OG1 CG2 REMARK 470 THR D 12 CA C O CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 491 CD - CE - NZ ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 532 CB - CG - CD2 ANGL. DEV. = -10.4 DEGREES REMARK 500 ILE B 418 CG1 - CB - CG2 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG B 467 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF PYRRHOCORICIN REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF PYRRHOCORICIN REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DKX RELATED DB: PDB REMARK 900 RELATED ID: 1DKY RELATED DB: PDB REMARK 900 RELATED ID: 1DKZ RELATED DB: PDB REMARK 900 RELATED ID: 3DPO RELATED DB: PDB REMARK 900 RELATED ID: 3DPP RELATED DB: PDB REMARK 900 RELATED ID: 3DPQ RELATED DB: PDB REMARK 900 RELATED ID: 3QNJ RELATED DB: PDB REMARK 900 RELATED ID: 4E81 RELATED DB: PDB REMARK 900 RELATED ID: 4HYB RELATED DB: PDB DBREF 4HY9 A 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4HY9 B 389 607 UNP P0A6Y8 DNAK_ECOLI 389 607 DBREF 4HY9 C 1 11 UNP P37362 PYRRH_PYRAP 1 11 DBREF 4HY9 D 1 11 UNP P37362 PYRRH_PYRAP 1 11 SEQADV 4HY9 LEU C 4 UNP P37362 GLY 4 ENGINEERED MUTATION SEQADV 4HY9 TYR C 5 UNP P37362 SER 5 ENGINEERED MUTATION SEQADV 4HY9 ALC C 6 UNP P37362 TYR 6 ENGINEERED MUTATION SEQADV 4HY9 ALC C 7 UNP P37362 LEU 7 ENGINEERED MUTATION SEQADV 4HY9 THR C 12 UNP P37362 EXPRESSION TAG SEQADV 4HY9 LEU D 4 UNP P37362 GLY 4 ENGINEERED MUTATION SEQADV 4HY9 TYR D 5 UNP P37362 SER 5 ENGINEERED MUTATION SEQADV 4HY9 ALC D 6 UNP P37362 TYR 6 ENGINEERED MUTATION SEQADV 4HY9 ALC D 7 UNP P37362 LEU 7 ENGINEERED MUTATION SEQADV 4HY9 THR D 12 UNP P37362 EXPRESSION TAG SEQRES 1 A 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 A 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 A 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 A 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 A 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 A 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 A 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 A 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 A 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 A 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 A 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 A 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 A 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 A 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 A 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 A 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 A 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 B 219 VAL LEU LEU LEU ASP VAL THR PRO LEU SER LEU GLY ILE SEQRES 2 B 219 GLU THR MET GLY GLY VAL MET THR THR LEU ILE ALA LYS SEQRES 3 B 219 ASN THR THR ILE PRO THR LYS HIS SER GLN VAL PHE SER SEQRES 4 B 219 THR ALA GLU ASP ASN GLN SER ALA VAL THR ILE HIS VAL SEQRES 5 B 219 LEU GLN GLY GLU ARG LYS ARG ALA ALA ASP ASN LYS SER SEQRES 6 B 219 LEU GLY GLN PHE ASN LEU ASP GLY ILE ASN PRO ALA PRO SEQRES 7 B 219 ARG GLY MET PRO GLN ILE GLU VAL THR PHE ASP ILE ASP SEQRES 8 B 219 ALA ASP GLY ILE LEU HIS VAL SER ALA LYS ASP LYS ASN SEQRES 9 B 219 SER GLY LYS GLU GLN LYS ILE THR ILE LYS ALA SER SER SEQRES 10 B 219 GLY LEU ASN GLU ASP GLU ILE GLN LYS MET VAL ARG ASP SEQRES 11 B 219 ALA GLU ALA ASN ALA GLU ALA ASP ARG LYS PHE GLU GLU SEQRES 12 B 219 LEU VAL GLN THR ARG ASN GLN GLY ASP HIS LEU LEU HIS SEQRES 13 B 219 SER THR ARG LYS GLN VAL GLU GLU ALA GLY ASP LYS LEU SEQRES 14 B 219 PRO ALA ASP ASP LYS THR ALA ILE GLU SER ALA LEU THR SEQRES 15 B 219 ALA LEU GLU THR ALA LEU LYS GLY GLU ASP LYS ALA ALA SEQRES 16 B 219 ILE GLU ALA LYS MET GLN GLU LEU ALA GLN VAL SER GLN SEQRES 17 B 219 LYS LEU MET GLU ILE ALA GLN GLN GLN HIS ALA SEQRES 1 C 12 VAL ASP LYS LEU TYR ALC ALC PRO ARG PRO THR THR SEQRES 1 D 12 VAL ASP LYS LEU TYR ALC ALC PRO ARG PRO THR THR MODRES 4HY9 ALC C 6 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID MODRES 4HY9 ALC C 7 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID MODRES 4HY9 ALC D 6 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID MODRES 4HY9 ALC D 7 ALA 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID HET ALC C 6 11 HET ALC C 7 11 HET ALC D 6 11 HET ALC D 7 11 HET SO4 A 701 5 HET SO4 B 701 5 HET SO4 B 702 5 HET SO4 C 101 5 HETNAM ALC 2-AMINO-3-CYCLOHEXYL-PROPIONIC ACID HETNAM SO4 SULFATE ION FORMUL 3 ALC 4(C9 H17 N O2) FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 HOH *386(H2 O) HELIX 1 1 ARG A 447 ASN A 451 5 5 HELIX 2 2 ASN A 508 ASN A 522 1 15 HELIX 3 3 ASN A 522 GLY A 554 1 33 HELIX 4 4 ASP A 555 LEU A 557 5 3 HELIX 5 5 PRO A 558 LYS A 577 1 20 HELIX 6 6 ASP A 580 VAL A 594 1 15 HELIX 7 7 ARG B 447 ASN B 451 5 5 HELIX 8 8 ASN B 508 ASN B 522 1 15 HELIX 9 9 ASN B 522 GLY B 554 1 33 HELIX 10 10 ASP B 555 LEU B 557 5 3 HELIX 11 11 PRO B 558 GLY B 578 1 21 HELIX 12 12 ASP B 580 VAL B 594 1 15 HELIX 13 13 SER B 595 GLN B 603 1 9 SHEET 1 A 4 VAL A 407 ILE A 412 0 SHEET 2 A 4 LEU A 399 THR A 403 -1 N LEU A 399 O LEU A 411 SHEET 3 A 4 VAL A 436 GLN A 442 -1 O LEU A 441 N GLY A 400 SHEET 4 A 4 LYS A 452 LEU A 459 -1 O PHE A 457 N ILE A 438 SHEET 1 B 4 THR A 420 PHE A 426 0 SHEET 2 B 4 ILE A 472 ILE A 478 -1 O ILE A 478 N THR A 420 SHEET 3 B 4 LEU A 484 ASP A 490 -1 O HIS A 485 N ASP A 477 SHEET 4 B 4 GLU A 496 ILE A 501 -1 O ILE A 501 N LEU A 484 SHEET 1 C 4 VAL B 407 ILE B 412 0 SHEET 2 C 4 LEU B 399 THR B 403 -1 N ILE B 401 O THR B 409 SHEET 3 C 4 ALA B 435 GLN B 442 -1 O LEU B 441 N GLY B 400 SHEET 4 C 4 LYS B 452 ASP B 460 -1 O PHE B 457 N ILE B 438 SHEET 1 D 5 GLU B 496 ILE B 501 0 SHEET 2 D 5 LEU B 484 ASP B 490 -1 N LEU B 484 O ILE B 501 SHEET 3 D 5 ILE B 472 ILE B 478 -1 N ASP B 477 O HIS B 485 SHEET 4 D 5 THR B 420 THR B 428 -1 N PHE B 426 O ILE B 472 SHEET 5 D 5 ALC D 6 ALC D 7 1 O ALC D 7 N SER B 427 LINK C TYR C 5 N ALC C 6 1555 1555 1.32 LINK C ALC C 6 N ALC C 7 1555 1555 1.33 LINK C ALC C 7 N PRO C 8 1555 1555 1.34 LINK C TYR D 5 N ALC D 6 1555 1555 1.32 LINK C ALC D 6 N ALC D 7 1555 1555 1.35 LINK C ALC D 7 N PRO D 8 1555 1555 1.34 CISPEP 1 ILE A 418 PRO A 419 0 7.82 CISPEP 2 ILE B 418 PRO B 419 0 -2.17 SITE 1 AC1 4 ASN A 458 ASP A 460 HOH A 838 HOH A 967 SITE 1 AC2 4 ARG B 447 ARG B 536 GLU B 579 HOH B 939 SITE 1 AC3 4 LYS B 502 SER B 504 HOH B 814 HOH B 890 SITE 1 AC4 7 MET A 404 GLY A 405 PRO C 8 ARG C 9 SITE 2 AC4 7 HOH C 203 HOH C 207 HOH C 208 SITE 1 AC5 28 ILE A 401 GLU A 402 THR A 403 MET A 404 SITE 2 AC5 28 GLN A 424 VAL A 425 PHE A 426 SER A 427 SITE 3 AC5 28 THR A 428 GLU A 430 GLN A 433 VAL A 436 SITE 4 AC5 28 ARG A 467 ILE A 472 ASP A 540 HOH A 942 SITE 5 AC5 28 ASP B 510 THR C 12 SO4 C 101 HOH C 201 SITE 6 AC5 28 HOH C 202 HOH C 203 HOH C 204 HOH C 206 SITE 7 AC5 28 HOH C 209 HOH C 211 HOH C 213 HOH C 214 SITE 1 AC6 22 ARG A 517 ASP A 518 ILE B 401 GLU B 402 SITE 2 AC6 22 THR B 403 MET B 404 VAL B 425 PHE B 426 SITE 3 AC6 22 SER B 427 THR B 428 ALA B 429 GLN B 433 SITE 4 AC6 22 ALA B 435 VAL B 436 THR B 437 ILE B 438 SITE 5 AC6 22 GLY B 468 HOH B 807 HOH B 912 THR D 12 SITE 6 AC6 22 HOH D 101 HOH D 103 CRYST1 77.402 162.131 45.279 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012920 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006168 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022085 0.00000