data_4HYA # _entry.id 4HYA # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HYA pdb_00004hya 10.2210/pdb4hya/pdb WWPDB D_1000179345 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1980-03-28 2 'Structure model' 1 1 2008-03-21 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 5 'Structure model' 2 1 2024-02-28 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Derived calculations' 9 4 'Structure model' Other 10 4 'Structure model' 'Structure summary' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Database references' 13 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_database_status 8 4 'Structure model' pdbx_entity_branch 9 4 'Structure model' pdbx_entity_branch_descriptor 10 4 'Structure model' pdbx_entity_branch_link 11 4 'Structure model' pdbx_entity_branch_list 12 4 'Structure model' pdbx_entity_nonpoly 13 4 'Structure model' pdbx_nonpoly_scheme 14 4 'Structure model' pdbx_struct_assembly 15 4 'Structure model' pdbx_struct_conn_angle 16 4 'Structure model' pdbx_struct_oper_list 17 4 'Structure model' pdbx_struct_special_symmetry 18 4 'Structure model' pdbx_unobs_or_zero_occ_atoms 19 4 'Structure model' pdbx_validate_chiral 20 4 'Structure model' pdbx_validate_symm_contact 21 4 'Structure model' struct_asym 22 4 'Structure model' struct_conn 23 4 'Structure model' struct_ref 24 4 'Structure model' struct_ref_seq 25 4 'Structure model' struct_site 26 4 'Structure model' struct_site_gen 27 5 'Structure model' chem_comp 28 5 'Structure model' chem_comp_atom 29 5 'Structure model' chem_comp_bond 30 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.Cartn_x' 2 4 'Structure model' '_atom_site.Cartn_y' 3 4 'Structure model' '_atom_site.Cartn_z' 4 4 'Structure model' '_atom_site.auth_atom_id' 5 4 'Structure model' '_atom_site.auth_comp_id' 6 4 'Structure model' '_atom_site.auth_seq_id' 7 4 'Structure model' '_atom_site.label_asym_id' 8 4 'Structure model' '_atom_site.label_atom_id' 9 4 'Structure model' '_atom_site.label_comp_id' 10 4 'Structure model' '_atom_site.label_entity_id' 11 4 'Structure model' '_atom_site.occupancy' 12 4 'Structure model' '_atom_site.type_symbol' 13 4 'Structure model' '_chem_comp.name' 14 4 'Structure model' '_chem_comp.type' 15 4 'Structure model' '_pdbx_database_status.process_site' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 25 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 26 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 27 4 'Structure model' '_pdbx_struct_conn_angle.value' 28 4 'Structure model' '_pdbx_struct_special_symmetry.label_asym_id' 29 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.auth_seq_id' 30 4 'Structure model' '_pdbx_unobs_or_zero_occ_atoms.label_seq_id' 31 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 32 4 'Structure model' '_pdbx_validate_symm_contact.auth_atom_id_1' 33 4 'Structure model' '_pdbx_validate_symm_contact.auth_atom_id_2' 34 4 'Structure model' '_pdbx_validate_symm_contact.auth_comp_id_1' 35 4 'Structure model' '_pdbx_validate_symm_contact.auth_comp_id_2' 36 4 'Structure model' '_pdbx_validate_symm_contact.site_symmetry_2' 37 4 'Structure model' '_struct_conn.pdbx_dist_value' 38 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 39 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 40 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 41 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 42 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 43 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 44 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 45 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 46 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 47 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 48 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 49 5 'Structure model' '_chem_comp.pdbx_synonyms' 50 5 'Structure model' '_database_2.pdbx_DOI' 51 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'GCU A 1 HAS WRONG CHIRALITY AT ATOM C1' 2 'GCU A 3 HAS WRONG CHIRALITY AT ATOM C1' 3 'GCU A 5 HAS WRONG CHIRALITY AT ATOM C1' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HYA _pdbx_database_status.recvd_initial_deposition_date 1977-11-20 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Arnott, S.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Hyaluronic acid: the role of divalent cations in conformation and packing.' J.Mol.Biol. 117 761 784 1977 JMOBAK UK 0022-2836 0070 ? 609101 '10.1016/0022-2836(77)90068-7' 1 ;Lals, a Linked-Atom Least-Squares Reciprocal-Space Refinement System Incorporating Stereochemical Restraints to Supplement Sparse Diffraction Data ; 'Acta Crystallogr.,Sect.A' 34 3 ? 1978 ACACEQ DK 0108-7673 0621 ? ? ? 2 ;Hyaluronic Acid, Structure of a Fully Extended 3-Fold Helical Sodium Salt and Comparison with the Less Extended 4-Fold Helical Forms ; J.Mol.Biol. 99 219 ? 1975 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Hyaluronic Acid, Molecular Conformations and Interactions in Two Sodium Salts' J.Mol.Biol. 95 384 ? 1975 JMOBAK UK 0022-2836 0070 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Winter, W.T.' 1 ? primary 'Arnott, S.' 2 ? 1 'Smith, P.J.C.' 3 ? 1 'Arnott, S.' 4 ? 2 'Winter, W.T.' 5 ? 2 'Smith, P.J.C.' 6 ? 2 'Arnott, S.' 7 ? 3 'Guss, J.M.' 8 ? 3 'Hukins, D.W.L.' 9 ? 3 'Smith, P.J.C.' 10 ? 3 'Winter, W.T.' 11 ? 3 'Arnott, S.' 12 ? 3 'Moorhouse, R.' 13 ? 3 'Rees, D.A.' 14 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 branched man ;2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranuronic acid ; 1155.965 1 ? ? ? ? 2 non-polymer syn 'CALCIUM ION' 40.078 3 ? ? ? ? 3 water nat water 18.015 9 ? ? ? ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CALCIUM ION' CA 3 water HOH # _pdbx_entity_branch.entity_id 1 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 1 DGlcpNAcb1-4DGlcpAa1-3DGlcpNAcb1-4DGlcpAa1-3DGlcpNAcb1-4DGlcpAa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 1 'WURCS=2.0/2,6,5/[a2122A-1a_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-1-2-1-2/a4-b1_b3-c1_c4-d1_d3-e1_e4-f1' WURCS PDB2Glycan 1.1.0 3 1 '[][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-GlcpNAc]{[(3+1)][b-D-GlcpA]{[(4+1)][b-D-3-deoxy-GlcpNAc]{}}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 1 2 NAG C1 O1 1 GCU O4 HO4 sing ? 2 1 3 GCU C1 O1 2 NAG O3 HO3 sing ? 3 1 4 NAG C1 O1 3 GCU O4 HO4 sing ? 4 1 5 GCU C1 O1 4 NAG O3 HO3 sing ? 5 1 6 NAG C1 O1 5 GCU O4 HO4 sing ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 GCU 'D-saccharide, alpha linking' . 'alpha-D-glucopyranuronic acid' 'alpha-D-glucuronic acid; D-glucuronic acid; glucuronic acid' 'C6 H10 O7' 194.139 HOH non-polymer . WATER ? 'H2 O' 18.015 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ;N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE ; 'C8 H15 N O6' 221.208 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier GCU 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpAa GCU 'COMMON NAME' GMML 1.0 'a-D-glucopyranuronic acid' GCU 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpA GCU 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcA NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero A 1 GCU 1 A GCU 1 A GCU 6 n A 1 NAG 2 A NAG 2 A NAG 5 n A 1 GCU 3 A GCU 3 A GCU 4 n A 1 NAG 4 A NAG 4 A NAG 3 n A 1 GCU 5 A GCU 5 A GCU 2 n A 1 NAG 6 A NAG 6 A NAG 1 n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA 1 7 7 CA CA A . C 2 CA 1 8 8 CA CA A . D 2 CA 1 9 9 CA CA A . E 3 HOH 1 10 10 HOH HOH A . E 3 HOH 2 11 11 HOH HOH A . E 3 HOH 3 12 12 HOH HOH A . E 3 HOH 4 13 13 HOH HOH A . E 3 HOH 5 14 14 HOH HOH A . E 3 HOH 6 15 15 HOH HOH A . E 3 HOH 7 16 16 HOH HOH A . E 3 HOH 8 17 17 HOH HOH A . E 3 HOH 9 18 18 HOH HOH A . # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag N _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id NAG _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 6 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id O3 _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id NAG _pdbx_unobs_or_zero_occ_atoms.label_seq_id 6 _pdbx_unobs_or_zero_occ_atoms.label_atom_id O3 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal LINKED-ATOM refinement 'LEAST-SQUARES MODEL-BUILDING PROCEDURE' ? 1 LALS refinement . ? 2 # _cell.entry_id 4HYA _cell.length_a 20.930 _cell.length_b 20.930 _cell.length_c 28.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HYA _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4HYA _exptl.method 'FIBER DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.crystal_id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 4HYA _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low . _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'FIBER DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'FIBER DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 81 _refine_hist.number_atoms_solvent 9 _refine_hist.number_atoms_total 90 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low . # _database_PDB_matrix.entry_id 4HYA _database_PDB_matrix.origx[1][1] .047778 _database_PDB_matrix.origx[1][2] .027585 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] .055170 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] .035336 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4HYA _struct.title 'HYALURONIC ACID, THE ROLE OF DIVALENT CATIONS IN CONFORMATION AND PACKING' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HYA _struct_keywords.pdbx_keywords 'TEXTURE OF CONNECTIVE TISSUE' _struct_keywords.text 'TEXTURE OF CONNECTIVE TISSUE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details ? _pdbx_struct_assembly.oligomeric_count ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GCU . O4 ? ? ? 1_555 A NAG . C1 ? ? A GCU 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale2 covale both ? A NAG . O3 ? ? ? 1_555 A GCU . C1 ? ? A NAG 2 A GCU 3 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale3 covale both ? A GCU . O4 ? ? ? 1_555 A NAG . C1 ? ? A GCU 3 A NAG 4 1_555 ? ? ? ? ? ? ? 1.386 ? ? covale4 covale both ? A NAG . O3 ? ? ? 1_555 A GCU . C1 ? ? A NAG 4 A GCU 5 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale5 covale both ? A GCU . O4 ? ? ? 1_555 A NAG . C1 ? ? A GCU 5 A NAG 6 1_555 ? ? ? ? ? ? ? 1.388 ? ? metalc1 metalc ? ? A GCU . O6A ? ? ? 1_555 D CA . CA ? ? A GCU 1 A CA 9 1_555 ? ? ? ? ? ? ? 2.919 ? ? metalc2 metalc ? ? A GCU . O6A ? ? ? 1_555 C CA . CA ? ? A GCU 3 A CA 8 1_555 ? ? ? ? ? ? ? 2.511 ? ? metalc3 metalc ? ? A GCU . O6A ? ? ? 1_555 B CA . CA ? ? A GCU 5 A CA 7 1_555 ? ? ? ? ? ? ? 2.770 ? ? metalc4 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 7 A HOH 10 1_555 ? ? ? ? ? ? ? 2.549 ? ? metalc5 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 7 A HOH 13 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc6 metalc ? ? B CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 7 A HOH 16 1_555 ? ? ? ? ? ? ? 2.517 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 8 A HOH 11 1_555 ? ? ? ? ? ? ? 2.474 ? ? metalc8 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 8 A HOH 14 1_555 ? ? ? ? ? ? ? 2.570 ? ? metalc9 metalc ? ? C CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 8 A HOH 17 1_555 ? ? ? ? ? ? ? 2.556 ? ? metalc10 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 9 A HOH 12 1_555 ? ? ? ? ? ? ? 2.666 ? ? metalc11 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 9 A HOH 15 1_555 ? ? ? ? ? ? ? 2.436 ? ? metalc12 metalc ? ? D CA . CA ? ? ? 1_555 E HOH . O ? ? A CA 9 A HOH 18 1_555 ? ? ? ? ? ? ? 2.516 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6A ? A GCU . ? A GCU 1 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 12 ? 1_555 80.7 ? 2 O6A ? A GCU . ? A GCU 1 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 15 ? 1_555 57.7 ? 3 O ? E HOH . ? A HOH 12 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 15 ? 1_555 102.4 ? 4 O6A ? A GCU . ? A GCU 1 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 18 ? 1_555 55.0 ? 5 O ? E HOH . ? A HOH 12 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 18 ? 1_555 74.7 ? 6 O ? E HOH . ? A HOH 15 ? 1_555 CA ? D CA . ? A CA 9 ? 1_555 O ? E HOH . ? A HOH 18 ? 1_555 112.1 ? 7 O6A ? A GCU . ? A GCU 3 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 11 ? 1_555 77.4 ? 8 O6A ? A GCU . ? A GCU 3 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 68.9 ? 9 O ? E HOH . ? A HOH 11 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 14 ? 1_555 106.4 ? 10 O6A ? A GCU . ? A GCU 3 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 17 ? 1_555 74.7 ? 11 O ? E HOH . ? A HOH 11 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 17 ? 1_555 118.6 ? 12 O ? E HOH . ? A HOH 14 ? 1_555 CA ? C CA . ? A CA 8 ? 1_555 O ? E HOH . ? A HOH 17 ? 1_555 112.3 ? 13 O6A ? A GCU . ? A GCU 5 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 10 ? 1_555 61.6 ? 14 O6A ? A GCU . ? A GCU 5 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 13 ? 1_555 117.0 ? 15 O ? E HOH . ? A HOH 10 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 13 ? 1_555 171.5 ? 16 O6A ? A GCU . ? A GCU 5 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 88.5 ? 17 O ? E HOH . ? A HOH 10 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 61.2 ? 18 O ? E HOH . ? A HOH 13 ? 1_555 CA ? B CA . ? A CA 7 ? 1_555 O ? E HOH . ? A HOH 16 ? 1_555 127.2 ? # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O1 _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 GCU _pdbx_validate_symm_contact.auth_seq_id_1 1 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 C3 _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 NAG _pdbx_validate_symm_contact.auth_seq_id_2 6 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 1_554 _pdbx_validate_symm_contact.dist 1.43 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? A GCU 1 ? 'WRONG HAND' . 2 1 C1 ? A GCU 3 ? 'WRONG HAND' . 3 1 C1 ? A GCU 5 ? 'WRONG HAND' . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A CA 7 ? B CA . 2 1 A CA 8 ? C CA . 3 1 A CA 9 ? D CA . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal CA CA CA N N 1 GCU C1 C N S 2 GCU C2 C N R 3 GCU C3 C N S 4 GCU C4 C N S 5 GCU C5 C N S 6 GCU C6 C N N 7 GCU O1 O N N 8 GCU O2 O N N 9 GCU O3 O N N 10 GCU O4 O N N 11 GCU O5 O N N 12 GCU O6A O N N 13 GCU O6B O N N 14 GCU H1 H N N 15 GCU H2 H N N 16 GCU H3 H N N 17 GCU H4 H N N 18 GCU H5 H N N 19 GCU HO1 H N N 20 GCU HO2 H N N 21 GCU HO3 H N N 22 GCU HO4 H N N 23 GCU HO6B H N N 24 HOH O O N N 25 HOH H1 H N N 26 HOH H2 H N N 27 NAG C1 C N R 28 NAG C2 C N R 29 NAG C3 C N R 30 NAG C4 C N S 31 NAG C5 C N R 32 NAG C6 C N N 33 NAG C7 C N N 34 NAG C8 C N N 35 NAG N2 N N N 36 NAG O1 O N N 37 NAG O3 O N N 38 NAG O4 O N N 39 NAG O5 O N N 40 NAG O6 O N N 41 NAG O7 O N N 42 NAG H1 H N N 43 NAG H2 H N N 44 NAG H3 H N N 45 NAG H4 H N N 46 NAG H5 H N N 47 NAG H61 H N N 48 NAG H62 H N N 49 NAG H81 H N N 50 NAG H82 H N N 51 NAG H83 H N N 52 NAG HN2 H N N 53 NAG HO1 H N N 54 NAG HO3 H N N 55 NAG HO4 H N N 56 NAG HO6 H N N 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal GCU C1 C2 sing N N 1 GCU C1 O1 sing N N 2 GCU C1 O5 sing N N 3 GCU C1 H1 sing N N 4 GCU C2 C3 sing N N 5 GCU C2 O2 sing N N 6 GCU C2 H2 sing N N 7 GCU C3 C4 sing N N 8 GCU C3 O3 sing N N 9 GCU C3 H3 sing N N 10 GCU C4 C5 sing N N 11 GCU C4 O4 sing N N 12 GCU C4 H4 sing N N 13 GCU C5 C6 sing N N 14 GCU C5 O5 sing N N 15 GCU C5 H5 sing N N 16 GCU C6 O6A doub N N 17 GCU C6 O6B sing N N 18 GCU O1 HO1 sing N N 19 GCU O2 HO2 sing N N 20 GCU O3 HO3 sing N N 21 GCU O4 HO4 sing N N 22 GCU O6B HO6B sing N N 23 HOH O H1 sing N N 24 HOH O H2 sing N N 25 NAG C1 C2 sing N N 26 NAG C1 O1 sing N N 27 NAG C1 O5 sing N N 28 NAG C1 H1 sing N N 29 NAG C2 C3 sing N N 30 NAG C2 N2 sing N N 31 NAG C2 H2 sing N N 32 NAG C3 C4 sing N N 33 NAG C3 O3 sing N N 34 NAG C3 H3 sing N N 35 NAG C4 C5 sing N N 36 NAG C4 O4 sing N N 37 NAG C4 H4 sing N N 38 NAG C5 C6 sing N N 39 NAG C5 O5 sing N N 40 NAG C5 H5 sing N N 41 NAG C6 O6 sing N N 42 NAG C6 H61 sing N N 43 NAG C6 H62 sing N N 44 NAG C7 C8 sing N N 45 NAG C7 N2 sing N N 46 NAG C7 O7 doub N N 47 NAG C8 H81 sing N N 48 NAG C8 H82 sing N N 49 NAG C8 H83 sing N N 50 NAG N2 HN2 sing N N 51 NAG O1 HO1 sing N N 52 NAG O3 HO3 sing N N 53 NAG O4 HO4 sing N N 54 NAG O6 HO6 sing N N 55 # _database_PDB_tvect.id 1 _database_PDB_tvect.vector[1] 0.00000 _database_PDB_tvect.vector[2] 0.00000 _database_PDB_tvect.vector[3] 28.30000 _database_PDB_tvect.details ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 1 GCU 1 n 1 NAG 2 n 1 GCU 3 n 1 NAG 4 n 1 GCU 5 n 1 NAG 6 n # _atom_sites.entry_id 4HYA _atom_sites.fract_transf_matrix[1][1] 0.047778 _atom_sites.fract_transf_matrix[1][2] 0.027585 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.055170 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.035336 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA H N O # loop_