data_4HYK # _entry.id 4HYK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4HYK pdb_00004hyk 10.2210/pdb4hyk/pdb NDB NA2121 ? ? RCSB RCSB076080 ? ? WWPDB D_1000076080 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-01-02 2 'Structure model' 1 1 2013-02-13 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4HYK _pdbx_database_status.recvd_initial_deposition_date 2012-11-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4F4W 'Dbh-Dpo4-Dpo4 #1' unspecified PDB 4F4X 'Dbh-Dpo4-Dpo4 #2' unspecified PDB 4F4Y Dbh-Dpo4-Dbh unspecified PDB 4F4Z Dpo4-Dpo4-Dbh unspecified PDB 4F50 Dbh-Dbh-Dpo4 unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pata, J.D.' 1 'Wilson, R.C.' 2 # _citation.id primary _citation.title 'Y-family polymerase conformation is a major determinant of fidelity and translesion specificity.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 20 _citation.page_last 31 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23245850 _citation.pdbx_database_id_DOI 10.1016/j.str.2012.11.005 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wilson, R.C.' 1 ? primary 'Jackson, M.A.' 2 ? primary 'Pata, J.D.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DNA polymerase IV' 40045.836 1 2.7.7.7 ? ? ? 2 polymer syn ;DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*G)-3') ; 3135.055 1 ? ? ? 'Primer DNA' 3 polymer syn ;DNA (5'-D(*TP*TP*CP*CP*GP*CP*CP*CP*CP*GP*GP*CP*TP*TP*CP*CP*C)-3') ; 5051.249 1 ? ? ? 'Template DNA' # _entity_name_com.entity_id 1 _entity_name_com.name 'Pol IV' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; A ? 2 polydeoxyribonucleotide no no '(DG)(DG)(DG)(DA)(DA)(DG)(DC)(DC)(DG)(DG)' GGGAAGCCGG P ? 3 polydeoxyribonucleotide no no '(DT)(DT)(DC)(DC)(DG)(DC)(DC)(DC)(DC)(DG)(DG)(DC)(DT)(DT)(DC)(DC)(DC)' TTCCGCCCCGGCTTCCC T ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ILE n 1 3 VAL n 1 4 ILE n 1 5 PHE n 1 6 VAL n 1 7 ASP n 1 8 PHE n 1 9 ASP n 1 10 TYR n 1 11 PHE n 1 12 PHE n 1 13 ALA n 1 14 GLN n 1 15 VAL n 1 16 GLU n 1 17 GLU n 1 18 VAL n 1 19 LEU n 1 20 ASN n 1 21 PRO n 1 22 GLN n 1 23 TYR n 1 24 LYS n 1 25 GLY n 1 26 LYS n 1 27 PRO n 1 28 LEU n 1 29 VAL n 1 30 VAL n 1 31 CYS n 1 32 VAL n 1 33 TYR n 1 34 SER n 1 35 GLY n 1 36 ARG n 1 37 THR n 1 38 LYS n 1 39 THR n 1 40 SER n 1 41 GLY n 1 42 ALA n 1 43 VAL n 1 44 ALA n 1 45 THR n 1 46 ALA n 1 47 ASN n 1 48 TYR n 1 49 GLU n 1 50 ALA n 1 51 ARG n 1 52 LYS n 1 53 LEU n 1 54 GLY n 1 55 VAL n 1 56 LYS n 1 57 ALA n 1 58 GLY n 1 59 MET n 1 60 PRO n 1 61 ILE n 1 62 ILE n 1 63 LYS n 1 64 ALA n 1 65 MET n 1 66 GLN n 1 67 ILE n 1 68 ALA n 1 69 PRO n 1 70 SER n 1 71 ALA n 1 72 ILE n 1 73 TYR n 1 74 VAL n 1 75 PRO n 1 76 MET n 1 77 ARG n 1 78 LYS n 1 79 PRO n 1 80 ILE n 1 81 TYR n 1 82 GLU n 1 83 ALA n 1 84 PHE n 1 85 SER n 1 86 ASN n 1 87 ARG n 1 88 ILE n 1 89 MET n 1 90 ASN n 1 91 LEU n 1 92 LEU n 1 93 ASN n 1 94 LYS n 1 95 HIS n 1 96 ALA n 1 97 ASP n 1 98 LYS n 1 99 ILE n 1 100 GLU n 1 101 VAL n 1 102 ALA n 1 103 SER n 1 104 ILE n 1 105 ASP n 1 106 GLU n 1 107 ALA n 1 108 TYR n 1 109 LEU n 1 110 ASP n 1 111 VAL n 1 112 THR n 1 113 ASN n 1 114 LYS n 1 115 VAL n 1 116 GLU n 1 117 GLY n 1 118 ASN n 1 119 PHE n 1 120 GLU n 1 121 ASN n 1 122 GLY n 1 123 ILE n 1 124 GLU n 1 125 LEU n 1 126 ALA n 1 127 ARG n 1 128 LYS n 1 129 ILE n 1 130 LYS n 1 131 GLN n 1 132 GLU n 1 133 ILE n 1 134 LEU n 1 135 GLU n 1 136 LYS n 1 137 GLU n 1 138 LYS n 1 139 ILE n 1 140 THR n 1 141 VAL n 1 142 THR n 1 143 VAL n 1 144 GLY n 1 145 VAL n 1 146 ALA n 1 147 PRO n 1 148 ASN n 1 149 LYS n 1 150 ILE n 1 151 LEU n 1 152 ALA n 1 153 LYS n 1 154 ILE n 1 155 ILE n 1 156 ALA n 1 157 ASP n 1 158 LYS n 1 159 SER n 1 160 LYS n 1 161 PRO n 1 162 ASN n 1 163 GLY n 1 164 LEU n 1 165 GLY n 1 166 VAL n 1 167 ILE n 1 168 ARG n 1 169 PRO n 1 170 THR n 1 171 GLU n 1 172 VAL n 1 173 GLN n 1 174 ASP n 1 175 PHE n 1 176 LEU n 1 177 ASN n 1 178 GLU n 1 179 LEU n 1 180 ASP n 1 181 ILE n 1 182 ASP n 1 183 GLU n 1 184 ILE n 1 185 PRO n 1 186 GLY n 1 187 ILE n 1 188 GLY n 1 189 SER n 1 190 VAL n 1 191 LEU n 1 192 ALA n 1 193 ARG n 1 194 ARG n 1 195 LEU n 1 196 ASN n 1 197 GLU n 1 198 LEU n 1 199 GLY n 1 200 ILE n 1 201 GLN n 1 202 LYS n 1 203 LEU n 1 204 ARG n 1 205 ASP n 1 206 ILE n 1 207 LEU n 1 208 SER n 1 209 LYS n 1 210 ASN n 1 211 TYR n 1 212 ASN n 1 213 GLU n 1 214 LEU n 1 215 GLU n 1 216 LYS n 1 217 ILE n 1 218 THR n 1 219 GLY n 1 220 LYS n 1 221 ALA n 1 222 LYS n 1 223 ALA n 1 224 LEU n 1 225 TYR n 1 226 LEU n 1 227 LEU n 1 228 LYS n 1 229 LEU n 1 230 ALA n 1 231 GLN n 1 232 ASN n 1 233 LYS n 1 234 TYR n 1 235 SER n 1 236 GLU n 1 237 PRO n 1 238 VAL n 1 239 GLU n 1 240 ASN n 1 241 LYS n 1 242 SER n 1 243 LYS n 1 244 ILE n 1 245 PRO n 1 246 HIS n 1 247 GLY n 1 248 ARG n 1 249 TYR n 1 250 LEU n 1 251 THR n 1 252 LEU n 1 253 PRO n 1 254 TYR n 1 255 ASN n 1 256 THR n 1 257 ARG n 1 258 ASP n 1 259 VAL n 1 260 LYS n 1 261 VAL n 1 262 ILE n 1 263 LEU n 1 264 PRO n 1 265 TYR n 1 266 LEU n 1 267 LYS n 1 268 LYS n 1 269 ALA n 1 270 ILE n 1 271 ASN n 1 272 GLU n 1 273 ALA n 1 274 TYR n 1 275 ASN n 1 276 LYS n 1 277 VAL n 1 278 ASN n 1 279 GLY n 1 280 ILE n 1 281 PRO n 1 282 MET n 1 283 ARG n 1 284 ILE n 1 285 THR n 1 286 VAL n 1 287 ILE n 1 288 ALA n 1 289 ILE n 1 290 MET n 1 291 GLU n 1 292 ASP n 1 293 LEU n 1 294 ASP n 1 295 ILE n 1 296 LEU n 1 297 SER n 1 298 LYS n 1 299 GLY n 1 300 LYS n 1 301 LYS n 1 302 PHE n 1 303 LYS n 1 304 HIS n 1 305 GLY n 1 306 ILE n 1 307 SER n 1 308 ILE n 1 309 ASP n 1 310 ASN n 1 311 ALA n 1 312 TYR n 1 313 LYS n 1 314 VAL n 1 315 ALA n 1 316 GLU n 1 317 ASP n 1 318 LEU n 1 319 LEU n 1 320 ARG n 1 321 GLU n 1 322 LEU n 1 323 LEU n 1 324 VAL n 1 325 ARG n 1 326 ASP n 1 327 LYS n 1 328 ARG n 1 329 ARG n 1 330 ASN n 1 331 VAL n 1 332 ARG n 1 333 ARG n 1 334 ILE n 1 335 GLY n 1 336 VAL n 1 337 LYS n 1 338 LEU n 1 339 ASP n 1 340 ASN n 1 341 ILE n 1 342 ILE n 1 343 ILE n 1 344 ASN n 1 345 LYS n 1 346 THR n 1 347 ASN n 1 348 LEU n 1 349 SER n 1 350 ASP n 1 351 PHE n 1 352 PHE n 1 353 ASP n 1 354 ILE n 2 1 DG n 2 2 DG n 2 3 DG n 2 4 DA n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DC n 2 9 DG n 2 10 DG n 3 1 DT n 3 2 DT n 3 3 DC n 3 4 DC n 3 5 DG n 3 6 DC n 3 7 DC n 3 8 DC n 3 9 DC n 3 10 DG n 3 11 DG n 3 12 DC n 3 13 DT n 3 14 DT n 3 15 DC n 3 16 DC n 3 17 DC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dbh, Saci_0554' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sulfolobus acidocaldarius' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 330779 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BLR(DE3)pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type pKKT7-H _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 'Chemically synthesized' 3 1 sample ? ? 'synthetic construct' ? 32630 'Chemically synthesized' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 ILE 4 4 4 ILE ILE A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 VAL 6 6 6 VAL VAL A . n A 1 7 ASP 7 7 7 ASP ASP A . n A 1 8 PHE 8 8 8 PHE PHE A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 TYR 10 10 10 TYR TYR A . n A 1 11 PHE 11 11 11 PHE PHE A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 GLN 14 14 14 GLN GLN A . n A 1 15 VAL 15 15 15 VAL VAL A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 ASN 20 20 20 ASN ASN A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 GLN 22 22 22 GLN GLN A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 LYS 26 26 26 LYS LYS A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 VAL 30 30 30 VAL VAL A . n A 1 31 CYS 31 31 31 CYS CYS A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 TYR 33 33 33 TYR TYR A . n A 1 34 SER 34 34 ? ? ? A . n A 1 35 GLY 35 35 ? ? ? A . n A 1 36 ARG 36 36 ? ? ? A . n A 1 37 THR 37 37 ? ? ? A . n A 1 38 LYS 38 38 ? ? ? A . n A 1 39 THR 39 39 ? ? ? A . n A 1 40 SER 40 40 ? ? ? A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 ALA 46 46 46 ALA ALA A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 PRO 60 60 60 PRO PRO A . n A 1 61 ILE 61 61 61 ILE ILE A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ALA 64 64 64 ALA ALA A . n A 1 65 MET 65 65 65 MET MET A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ALA 68 68 68 ALA ALA A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 SER 70 70 70 SER SER A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 TYR 73 73 73 TYR TYR A . n A 1 74 VAL 74 74 74 VAL VAL A . n A 1 75 PRO 75 75 75 PRO PRO A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 ILE 80 80 80 ILE ILE A . n A 1 81 TYR 81 81 81 TYR TYR A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 ALA 83 83 83 ALA ALA A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ASN 86 86 86 ASN ASN A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 MET 89 89 89 MET MET A . n A 1 90 ASN 90 90 90 ASN ASN A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 ASN 93 93 93 ASN ASN A . n A 1 94 LYS 94 94 94 LYS LYS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 GLU 100 100 100 GLU GLU A . n A 1 101 VAL 101 101 101 VAL VAL A . n A 1 102 ALA 102 102 102 ALA ALA A . n A 1 103 SER 103 103 103 SER SER A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 ASP 105 105 105 ASP ASP A . n A 1 106 GLU 106 106 106 GLU GLU A . n A 1 107 ALA 107 107 107 ALA ALA A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 LEU 109 109 109 LEU LEU A . n A 1 110 ASP 110 110 110 ASP ASP A . n A 1 111 VAL 111 111 111 VAL VAL A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 LYS 114 114 114 LYS LYS A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 ASN 118 118 118 ASN ASN A . n A 1 119 PHE 119 119 119 PHE PHE A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 ASN 121 121 121 ASN ASN A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 ILE 123 123 123 ILE ILE A . n A 1 124 GLU 124 124 124 GLU GLU A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 ARG 127 127 127 ARG ARG A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 LYS 130 130 130 LYS LYS A . n A 1 131 GLN 131 131 131 GLN GLN A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ILE 133 133 133 ILE ILE A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 GLU 135 135 135 GLU GLU A . n A 1 136 LYS 136 136 136 LYS LYS A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 LYS 138 138 138 LYS LYS A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 THR 140 140 140 THR THR A . n A 1 141 VAL 141 141 141 VAL VAL A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 VAL 145 145 145 VAL VAL A . n A 1 146 ALA 146 146 146 ALA ALA A . n A 1 147 PRO 147 147 147 PRO PRO A . n A 1 148 ASN 148 148 148 ASN ASN A . n A 1 149 LYS 149 149 149 LYS LYS A . n A 1 150 ILE 150 150 150 ILE ILE A . n A 1 151 LEU 151 151 151 LEU LEU A . n A 1 152 ALA 152 152 152 ALA ALA A . n A 1 153 LYS 153 153 153 LYS LYS A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 SER 159 159 159 SER SER A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 PRO 161 161 161 PRO PRO A . n A 1 162 ASN 162 162 162 ASN ASN A . n A 1 163 GLY 163 163 163 GLY GLY A . n A 1 164 LEU 164 164 164 LEU LEU A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 VAL 166 166 166 VAL VAL A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ARG 168 168 168 ARG ARG A . n A 1 169 PRO 169 169 169 PRO PRO A . n A 1 170 THR 170 170 170 THR THR A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 GLN 173 173 173 GLN GLN A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 PHE 175 175 175 PHE PHE A . n A 1 176 LEU 176 176 176 LEU LEU A . n A 1 177 ASN 177 177 177 ASN ASN A . n A 1 178 GLU 178 178 178 GLU GLU A . n A 1 179 LEU 179 179 179 LEU LEU A . n A 1 180 ASP 180 180 180 ASP ASP A . n A 1 181 ILE 181 181 181 ILE ILE A . n A 1 182 ASP 182 182 182 ASP ASP A . n A 1 183 GLU 183 183 183 GLU GLU A . n A 1 184 ILE 184 184 184 ILE ILE A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 GLY 186 186 186 GLY GLY A . n A 1 187 ILE 187 187 187 ILE ILE A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 VAL 190 190 190 VAL VAL A . n A 1 191 LEU 191 191 191 LEU LEU A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 ARG 193 193 193 ARG ARG A . n A 1 194 ARG 194 194 194 ARG ARG A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ASN 196 196 196 ASN ASN A . n A 1 197 GLU 197 197 197 GLU GLU A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 GLY 199 199 199 GLY GLY A . n A 1 200 ILE 200 200 200 ILE ILE A . n A 1 201 GLN 201 201 201 GLN GLN A . n A 1 202 LYS 202 202 202 LYS LYS A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 ARG 204 204 204 ARG ARG A . n A 1 205 ASP 205 205 205 ASP ASP A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 LEU 207 207 207 LEU LEU A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 LYS 209 209 209 LYS LYS A . n A 1 210 ASN 210 210 210 ASN ASN A . n A 1 211 TYR 211 211 211 TYR TYR A . n A 1 212 ASN 212 212 212 ASN ASN A . n A 1 213 GLU 213 213 213 GLU GLU A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 LYS 216 216 216 LYS LYS A . n A 1 217 ILE 217 217 217 ILE ILE A . n A 1 218 THR 218 218 218 THR THR A . n A 1 219 GLY 219 219 219 GLY GLY A . n A 1 220 LYS 220 220 220 LYS LYS A . n A 1 221 ALA 221 221 221 ALA ALA A . n A 1 222 LYS 222 222 222 LYS LYS A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 TYR 225 225 225 TYR TYR A . n A 1 226 LEU 226 226 226 LEU LEU A . n A 1 227 LEU 227 227 227 LEU LEU A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 LEU 229 229 229 LEU LEU A . n A 1 230 ALA 230 230 230 ALA ALA A . n A 1 231 GLN 231 231 231 GLN GLN A . n A 1 232 ASN 232 232 232 ASN ASN A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 TYR 234 234 234 TYR TYR A . n A 1 235 SER 235 235 235 SER SER A . n A 1 236 GLU 236 236 236 GLU GLU A . n A 1 237 PRO 237 237 237 PRO PRO A . n A 1 238 VAL 238 238 238 VAL VAL A . n A 1 239 GLU 239 239 239 GLU GLU A . n A 1 240 ASN 240 240 240 ASN ASN A . n A 1 241 LYS 241 241 241 LYS LYS A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 LYS 243 243 243 LYS LYS A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 PRO 245 245 245 PRO PRO A . n A 1 246 HIS 246 246 246 HIS HIS A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 ARG 248 248 248 ARG ARG A . n A 1 249 TYR 249 249 249 TYR TYR A . n A 1 250 LEU 250 250 250 LEU LEU A . n A 1 251 THR 251 251 251 THR THR A . n A 1 252 LEU 252 252 252 LEU LEU A . n A 1 253 PRO 253 253 253 PRO PRO A . n A 1 254 TYR 254 254 254 TYR TYR A . n A 1 255 ASN 255 255 255 ASN ASN A . n A 1 256 THR 256 256 256 THR THR A . n A 1 257 ARG 257 257 257 ARG ARG A . n A 1 258 ASP 258 258 258 ASP ASP A . n A 1 259 VAL 259 259 259 VAL VAL A . n A 1 260 LYS 260 260 260 LYS LYS A . n A 1 261 VAL 261 261 261 VAL VAL A . n A 1 262 ILE 262 262 262 ILE ILE A . n A 1 263 LEU 263 263 263 LEU LEU A . n A 1 264 PRO 264 264 264 PRO PRO A . n A 1 265 TYR 265 265 265 TYR TYR A . n A 1 266 LEU 266 266 266 LEU LEU A . n A 1 267 LYS 267 267 267 LYS LYS A . n A 1 268 LYS 268 268 268 LYS LYS A . n A 1 269 ALA 269 269 269 ALA ALA A . n A 1 270 ILE 270 270 270 ILE ILE A . n A 1 271 ASN 271 271 271 ASN ASN A . n A 1 272 GLU 272 272 272 GLU GLU A . n A 1 273 ALA 273 273 273 ALA ALA A . n A 1 274 TYR 274 274 274 TYR TYR A . n A 1 275 ASN 275 275 275 ASN ASN A . n A 1 276 LYS 276 276 276 LYS LYS A . n A 1 277 VAL 277 277 277 VAL VAL A . n A 1 278 ASN 278 278 278 ASN ASN A . n A 1 279 GLY 279 279 279 GLY GLY A . n A 1 280 ILE 280 280 280 ILE ILE A . n A 1 281 PRO 281 281 281 PRO PRO A . n A 1 282 MET 282 282 282 MET MET A . n A 1 283 ARG 283 283 283 ARG ARG A . n A 1 284 ILE 284 284 284 ILE ILE A . n A 1 285 THR 285 285 285 THR THR A . n A 1 286 VAL 286 286 286 VAL VAL A . n A 1 287 ILE 287 287 287 ILE ILE A . n A 1 288 ALA 288 288 288 ALA ALA A . n A 1 289 ILE 289 289 289 ILE ILE A . n A 1 290 MET 290 290 290 MET MET A . n A 1 291 GLU 291 291 291 GLU GLU A . n A 1 292 ASP 292 292 292 ASP ASP A . n A 1 293 LEU 293 293 293 LEU LEU A . n A 1 294 ASP 294 294 294 ASP ASP A . n A 1 295 ILE 295 295 295 ILE ILE A . n A 1 296 LEU 296 296 296 LEU LEU A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 LYS 298 298 298 LYS LYS A . n A 1 299 GLY 299 299 299 GLY GLY A . n A 1 300 LYS 300 300 300 LYS LYS A . n A 1 301 LYS 301 301 301 LYS LYS A . n A 1 302 PHE 302 302 302 PHE PHE A . n A 1 303 LYS 303 303 303 LYS LYS A . n A 1 304 HIS 304 304 304 HIS HIS A . n A 1 305 GLY 305 305 305 GLY GLY A . n A 1 306 ILE 306 306 306 ILE ILE A . n A 1 307 SER 307 307 307 SER SER A . n A 1 308 ILE 308 308 308 ILE ILE A . n A 1 309 ASP 309 309 309 ASP ASP A . n A 1 310 ASN 310 310 310 ASN ASN A . n A 1 311 ALA 311 311 311 ALA ALA A . n A 1 312 TYR 312 312 312 TYR TYR A . n A 1 313 LYS 313 313 313 LYS LYS A . n A 1 314 VAL 314 314 314 VAL VAL A . n A 1 315 ALA 315 315 315 ALA ALA A . n A 1 316 GLU 316 316 316 GLU GLU A . n A 1 317 ASP 317 317 317 ASP ASP A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 LEU 319 319 319 LEU LEU A . n A 1 320 ARG 320 320 320 ARG ARG A . n A 1 321 GLU 321 321 321 GLU GLU A . n A 1 322 LEU 322 322 322 LEU LEU A . n A 1 323 LEU 323 323 323 LEU LEU A . n A 1 324 VAL 324 324 324 VAL VAL A . n A 1 325 ARG 325 325 325 ARG ARG A . n A 1 326 ASP 326 326 326 ASP ASP A . n A 1 327 LYS 327 327 327 LYS LYS A . n A 1 328 ARG 328 328 328 ARG ARG A . n A 1 329 ARG 329 329 329 ARG ARG A . n A 1 330 ASN 330 330 330 ASN ASN A . n A 1 331 VAL 331 331 331 VAL VAL A . n A 1 332 ARG 332 332 332 ARG ARG A . n A 1 333 ARG 333 333 333 ARG ARG A . n A 1 334 ILE 334 334 334 ILE ILE A . n A 1 335 GLY 335 335 335 GLY GLY A . n A 1 336 VAL 336 336 336 VAL VAL A . n A 1 337 LYS 337 337 337 LYS LYS A . n A 1 338 LEU 338 338 338 LEU LEU A . n A 1 339 ASP 339 339 339 ASP ASP A . n A 1 340 ASN 340 340 340 ASN ASN A . n A 1 341 ILE 341 341 341 ILE ILE A . n A 1 342 ILE 342 342 342 ILE ILE A . n A 1 343 ILE 343 343 343 ILE ILE A . n A 1 344 ASN 344 344 ? ? ? A . n A 1 345 LYS 345 345 ? ? ? A . n A 1 346 THR 346 346 ? ? ? A . n A 1 347 ASN 347 347 ? ? ? A . n A 1 348 LEU 348 348 ? ? ? A . n A 1 349 SER 349 349 ? ? ? A . n A 1 350 ASP 350 350 ? ? ? A . n A 1 351 PHE 351 351 ? ? ? A . n A 1 352 PHE 352 352 ? ? ? A . n A 1 353 ASP 353 353 ? ? ? A . n A 1 354 ILE 354 354 ? ? ? A . n B 2 1 DG 1 1 1 DG G P . n B 2 2 DG 2 2 2 DG G P . n B 2 3 DG 3 3 3 DG G P . n B 2 4 DA 4 4 4 DA A P . n B 2 5 DA 5 5 5 DA A P . n B 2 6 DG 6 6 6 DG G P . n B 2 7 DC 7 7 7 DC C P . n B 2 8 DC 8 8 8 DC C P . n B 2 9 DG 9 9 ? ? ? P . n B 2 10 DG 10 10 ? ? ? P . n C 3 1 DT 1 1 ? ? ? T . n C 3 2 DT 2 2 ? ? ? T . n C 3 3 DC 3 3 ? ? ? T . n C 3 4 DC 4 4 ? ? ? T . n C 3 5 DG 5 5 ? ? ? T . n C 3 6 DC 6 6 ? ? ? T . n C 3 7 DC 7 7 ? ? ? T . n C 3 8 DC 8 8 ? ? ? T . n C 3 9 DC 9 9 ? ? ? T . n C 3 10 DG 10 10 10 DG G T . n C 3 11 DG 11 11 11 DG G T . n C 3 12 DC 12 12 12 DC C T . n C 3 13 DT 13 13 13 DT T T . n C 3 14 DT 14 14 14 DT T T . n C 3 15 DC 15 15 15 DC C T . n C 3 16 DC 16 16 16 DC C T . n C 3 17 DC 17 17 17 DC C T . n # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CrystalClear 'data collection' . ? 1 PHASER phasing 'in PHENIX' ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _cell.entry_id 4HYK _cell.length_a 122.642 _cell.length_b 122.642 _cell.length_c 69.923 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4HYK _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4HYK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.73 _exptl_crystal.density_percent_sol 54.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7 _exptl_crystal_grow.pdbx_details '18% PEG-3350, 100 mM HEPES pH 7.55, 100mM Ca(OAc)2, 2.5% glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV++' _diffrn_detector.pdbx_collection_date 2005-08-29 _diffrn_detector.details 'OSMICS confocal optics' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU MICROMAX-007' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4HYK _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.8 _reflns.number_obs 12423 _reflns.number_all 13622 _reflns.percent_possible_obs 91.2 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 22.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.80 _reflns_shell.d_res_low 2.85 _reflns_shell.percent_possible_all 57.4 _reflns_shell.Rmerge_I_obs 0.216 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.1 _reflns_shell.pdbx_redundancy 1.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 378 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4HYK _refine.ls_number_reflns_obs 12411 _refine.ls_number_reflns_all 13622 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.53 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 29.745 _refine.ls_d_res_high 2.802 _refine.ls_percent_reflns_obs 91.31 _refine.ls_R_factor_obs 0.2419 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2340 _refine.ls_R_factor_R_free 0.3134 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.00 _refine.ls_number_reflns_R_free 1241 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 11.3924 _refine.aniso_B[2][2] 11.3924 _refine.aniso_B[3][3] -22.7848 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.328 _refine.solvent_model_param_bsol 45.753 _refine.pdbx_solvent_vdw_probe_radii 1.00 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.73 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.48 _refine.pdbx_overall_phase_error 34.03 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2673 _refine_hist.pdbx_number_atoms_nucleic_acid 325 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2998 _refine_hist.d_res_high 2.802 _refine_hist.d_res_low 29.745 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 3076 ? 'X-RAY DIFFRACTION' f_angle_d 1.213 ? ? 4205 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 18.532 ? ? 1215 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.080 ? ? 490 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 479 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.8020 2.9139 906 0.3200 68.00 0.4022 . . 101 . . . . 'X-RAY DIFFRACTION' . 2.9139 3.0464 1141 0.3001 86.00 0.3529 . . 127 . . . . 'X-RAY DIFFRACTION' . 3.0464 3.2069 1188 0.2713 89.00 0.3431 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.2069 3.4075 1235 0.2511 93.00 0.3067 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.4075 3.6702 1278 0.2345 95.00 0.3573 . . 141 . . . . 'X-RAY DIFFRACTION' . 3.6702 4.0387 1313 0.2353 98.00 0.3393 . . 146 . . . . 'X-RAY DIFFRACTION' . 4.0387 4.6213 1329 0.1882 98.00 0.3053 . . 147 . . . . 'X-RAY DIFFRACTION' . 4.6213 5.8152 1366 0.2189 98.00 0.2841 . . 152 . . . . 'X-RAY DIFFRACTION' . 5.8152 29.7467 1414 0.2359 97.00 0.2842 . . 158 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4HYK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4HYK _struct.title 'Dbh Ternary Complex (substrates partially disordered)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4HYK _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'Y-family DNA polymerase, TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP DPO4_SULAC Q4JB80 1 ;MIVIFVDFDYFFAQVEEVLNPQYKGKPLVVCVYSGRTKTSGAVATANYEARKLGVKAGMPIIKAMQIAPSAIYVPMRKPI YEAFSNRIMNLLNKHADKIEVASIDEAYLDVTNKVEGNFENGIELARKIKQEILEKEKITVTVGVAPNKILAKIIADKSK PNGLGVIRPTEVQDFLNELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPVEN KSKIPHGRYLTLPYNTRDVKVILPYLKKAINEAYNKVNGIPMRITVIAIMEDLDILSKGKKFKHGISIDNAYKVAEDLLR ELLVRDKRRNVRRIGVKLDNIIINKTNLSDFFDI ; 1 ? 2 PDB 4HYK 4HYK 2 ? ? ? 3 PDB 4HYK 4HYK 3 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4HYK A 1 ? 354 ? Q4JB80 1 ? 354 ? 1 354 2 2 4HYK P 1 ? 10 ? 4HYK 1 ? 10 ? 1 10 3 3 4HYK T 1 ? 17 ? 4HYK 1 ? 17 ? 1 17 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1450 ? 1 MORE -17 ? 1 'SSA (A^2)' 19570 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 10 ? ASN A 20 ? TYR A 10 ASN A 20 1 ? 11 HELX_P HELX_P2 2 PRO A 21 ? LYS A 24 ? PRO A 21 LYS A 24 5 ? 4 HELX_P HELX_P3 3 ASN A 47 ? LYS A 52 ? ASN A 47 LYS A 52 1 ? 6 HELX_P HELX_P4 4 PRO A 60 ? ALA A 68 ? PRO A 60 ALA A 68 1 ? 9 HELX_P HELX_P5 5 ARG A 77 ? ASN A 93 ? ARG A 77 ASN A 93 1 ? 17 HELX_P HELX_P6 6 ASN A 118 ? LYS A 138 ? ASN A 118 LYS A 138 1 ? 21 HELX_P HELX_P7 7 ASN A 148 ? LYS A 158 ? ASN A 148 LYS A 158 1 ? 11 HELX_P HELX_P8 8 ARG A 168 ? THR A 170 ? ARG A 168 THR A 170 5 ? 3 HELX_P HELX_P9 9 GLU A 171 ? GLU A 178 ? GLU A 171 GLU A 178 1 ? 8 HELX_P HELX_P10 10 ASP A 180 ? ILE A 184 ? ASP A 180 ILE A 184 5 ? 5 HELX_P HELX_P11 11 SER A 189 ? GLY A 199 ? SER A 189 GLY A 199 1 ? 11 HELX_P HELX_P12 12 LYS A 202 ? LEU A 207 ? LYS A 202 LEU A 207 5 ? 6 HELX_P HELX_P13 13 TYR A 211 ? LYS A 216 ? TYR A 211 LYS A 216 1 ? 6 HELX_P HELX_P14 14 GLY A 219 ? GLN A 231 ? GLY A 219 GLN A 231 1 ? 13 HELX_P HELX_P15 15 ASP A 258 ? TYR A 274 ? ASP A 258 TYR A 274 1 ? 17 HELX_P HELX_P16 16 SER A 307 ? LYS A 327 ? SER A 307 LYS A 327 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? B DG 1 N1 ? ? ? 1_555 C DC 17 N3 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DG 1 N2 ? ? ? 1_555 C DC 17 O2 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DG 1 O6 ? ? ? 1_555 C DC 17 N4 ? ? P DG 1 T DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DC 16 N3 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DC 16 O2 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 2 O6 ? ? ? 1_555 C DC 16 N4 ? ? P DG 2 T DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DC 15 N3 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DC 15 O2 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 3 O6 ? ? ? 1_555 C DC 15 N4 ? ? P DG 3 T DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 14 N3 ? ? P DA 4 T DT 14 1_555 ? ? ? ? ? ? 'DA-DT PAIR' ? ? ? hydrog11 hydrog ? ? B DA 5 N1 ? ? ? 1_555 C DT 13 N3 ? ? P DA 5 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DA 5 N6 ? ? ? 1_555 C DT 13 O4 ? ? P DA 5 T DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 12 N3 ? ? P DG 6 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 12 O2 ? ? P DG 6 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 12 N4 ? ? P DG 6 T DC 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 7 N3 ? ? ? 1_555 C DG 11 N1 ? ? P DC 7 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 7 N4 ? ? ? 1_555 C DG 11 O6 ? ? P DC 7 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 7 O2 ? ? ? 1_555 C DG 11 N2 ? ? P DC 7 T DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 10 N1 ? ? P DC 8 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 10 O6 ? ? P DC 8 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 10 N2 ? ? P DC 8 T DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 160 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 160 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 161 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 161 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.48 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 9 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? parallel B 6 7 ? anti-parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 164 ? VAL A 166 ? LEU A 164 VAL A 166 A 2 VAL A 141 ? ALA A 146 ? VAL A 141 ALA A 146 A 3 VAL A 3 ? PHE A 8 ? VAL A 3 PHE A 8 A 4 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 A 5 LYS A 98 ? VAL A 101 ? LYS A 98 VAL A 101 A 6 LYS A 241 ? SER A 242 ? LYS A 241 SER A 242 A 7 VAL A 331 ? ILE A 342 ? VAL A 331 ILE A 342 A 8 TYR A 249 ? THR A 251 ? TYR A 249 THR A 251 B 1 LEU A 164 ? VAL A 166 ? LEU A 164 VAL A 166 B 2 VAL A 141 ? ALA A 146 ? VAL A 141 ALA A 146 B 3 VAL A 3 ? PHE A 8 ? VAL A 3 PHE A 8 B 4 GLU A 106 ? ASP A 110 ? GLU A 106 ASP A 110 B 5 LYS A 98 ? VAL A 101 ? LYS A 98 VAL A 101 B 6 LYS A 241 ? SER A 242 ? LYS A 241 SER A 242 B 7 VAL A 331 ? ILE A 342 ? VAL A 331 ILE A 342 B 8 ILE A 280 ? MET A 290 ? ILE A 280 MET A 290 B 9 ILE A 295 ? LYS A 301 ? ILE A 295 LYS A 301 C 1 ALA A 42 ? ALA A 46 ? ALA A 42 ALA A 46 C 2 LEU A 28 ? VAL A 32 ? LEU A 28 VAL A 32 C 3 ILE A 72 ? PRO A 75 ? ILE A 72 PRO A 75 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLY A 165 ? O GLY A 165 N VAL A 145 ? N VAL A 145 A 2 3 O ALA A 146 ? O ALA A 146 N VAL A 3 ? N VAL A 3 A 3 4 N VAL A 6 ? N VAL A 6 O ALA A 107 ? O ALA A 107 A 4 5 O TYR A 108 ? O TYR A 108 N GLU A 100 ? N GLU A 100 A 5 6 N VAL A 101 ? N VAL A 101 O LYS A 241 ? O LYS A 241 A 6 7 N SER A 242 ? N SER A 242 O ILE A 341 ? O ILE A 341 A 7 8 O ILE A 334 ? O ILE A 334 N LEU A 250 ? N LEU A 250 B 1 2 O GLY A 165 ? O GLY A 165 N VAL A 145 ? N VAL A 145 B 2 3 O ALA A 146 ? O ALA A 146 N VAL A 3 ? N VAL A 3 B 3 4 N VAL A 6 ? N VAL A 6 O ALA A 107 ? O ALA A 107 B 4 5 O TYR A 108 ? O TYR A 108 N GLU A 100 ? N GLU A 100 B 5 6 N VAL A 101 ? N VAL A 101 O LYS A 241 ? O LYS A 241 B 6 7 N SER A 242 ? N SER A 242 O ILE A 341 ? O ILE A 341 B 7 8 O GLY A 335 ? O GLY A 335 N ILE A 287 ? N ILE A 287 B 8 9 N VAL A 286 ? N VAL A 286 O LYS A 298 ? O LYS A 298 C 1 2 O ALA A 44 ? O ALA A 44 N VAL A 30 ? N VAL A 30 C 2 3 N VAL A 29 ? N VAL A 29 O VAL A 74 ? O VAL A 74 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" P DG 2 ? ? "C1'" P DG 2 ? ? N9 P DG 2 ? ? 115.29 108.30 6.99 0.30 N 2 1 "O4'" P DC 7 ? ? "C1'" P DC 7 ? ? N1 P DC 7 ? ? 110.24 108.30 1.94 0.30 N 3 1 "O4'" T DT 13 ? ? "C1'" T DT 13 ? ? N1 T DT 13 ? ? 110.53 108.30 2.23 0.30 N 4 1 N3 T DT 14 ? ? C4 T DT 14 ? ? O4 T DT 14 ? ? 123.65 119.90 3.75 0.60 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 44 ? ? -91.32 -89.47 2 1 ALA A 46 ? ? -170.48 124.15 3 1 ASN A 47 ? ? -65.94 -177.28 4 1 LYS A 52 ? ? -52.49 1.75 5 1 SER A 103 ? ? -170.48 -177.06 6 1 GLU A 137 ? ? -143.11 16.93 7 1 LYS A 138 ? ? 44.19 14.61 8 1 ASN A 177 ? ? -66.43 -85.38 9 1 GLU A 178 ? ? -60.63 93.18 10 1 LEU A 179 ? ? -162.84 100.79 11 1 TYR A 211 ? ? 61.23 -55.17 12 1 LEU A 227 ? ? -59.77 -73.16 13 1 SER A 235 ? ? -169.46 50.00 14 1 TYR A 254 ? ? -121.94 -168.53 15 1 ARG A 257 ? ? -150.52 26.10 16 1 ASN A 275 ? ? -140.56 -23.13 17 1 LYS A 298 ? ? -160.02 111.06 18 1 LYS A 298 ? ? -160.04 111.11 19 1 LYS A 327 ? ? 61.16 -52.20 20 1 ARG A 328 ? ? -70.08 -89.48 21 1 ARG A 332 ? ? -106.01 -62.01 22 1 ASN A 340 ? ? 39.45 80.50 # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 28.8398 -6.9281 -13.6704 0.5598 0.8711 0.7620 -0.0551 -0.1587 0.0212 0.2409 0.5615 0.2294 0.3653 0.2357 0.3555 0.1118 -0.3977 -0.0015 -0.1624 0.4278 0.7625 -0.4739 -0.2767 -0.7856 'X-RAY DIFFRACTION' 2 ? refined 33.6408 18.8073 -9.7924 0.4766 0.1654 0.4194 0.4580 0.0079 0.0294 1.8463 1.9828 2.8612 -0.5285 0.1141 -0.4325 -0.1073 0.1995 -0.0196 -0.1846 -0.1378 0.3362 0.4807 0.0043 -0.4616 'X-RAY DIFFRACTION' 3 ? refined 44.8384 -4.1580 -28.6938 0.7939 0.6241 0.4526 -0.1418 0.0560 0.0168 1.9954 2.1726 2.1914 -1.1864 -1.5111 0.4863 -0.1083 0.1448 -0.0003 0.6174 -0.3267 -0.0905 -0.5675 1.0049 -0.3384 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 P 1 P 8 '( CHAIN P AND RESID 1:8 ) OR ( CHAIN T AND RESID 10:17 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 1 T 10 T 17 '( CHAIN P AND RESID 1:8 ) OR ( CHAIN T AND RESID 10:17 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 2 A 1 A 244 '( CHAIN A AND RESID 1:244 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 3 A 245 A 343 '( CHAIN A AND RESID 245:343 )' ? ? ? ? ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER 34 ? A SER 34 2 1 Y 1 A GLY 35 ? A GLY 35 3 1 Y 1 A ARG 36 ? A ARG 36 4 1 Y 1 A THR 37 ? A THR 37 5 1 Y 1 A LYS 38 ? A LYS 38 6 1 Y 1 A THR 39 ? A THR 39 7 1 Y 1 A SER 40 ? A SER 40 8 1 Y 1 A ASN 344 ? A ASN 344 9 1 Y 1 A LYS 345 ? A LYS 345 10 1 Y 1 A THR 346 ? A THR 346 11 1 Y 1 A ASN 347 ? A ASN 347 12 1 Y 1 A LEU 348 ? A LEU 348 13 1 Y 1 A SER 349 ? A SER 349 14 1 Y 1 A ASP 350 ? A ASP 350 15 1 Y 1 A PHE 351 ? A PHE 351 16 1 Y 1 A PHE 352 ? A PHE 352 17 1 Y 1 A ASP 353 ? A ASP 353 18 1 Y 1 A ILE 354 ? A ILE 354 19 1 Y 1 P DG 9 ? B DG 9 20 1 Y 1 P DG 10 ? B DG 10 21 1 Y 1 T DT 1 ? C DT 1 22 1 Y 1 T DT 2 ? C DT 2 23 1 Y 1 T DC 3 ? C DC 3 24 1 Y 1 T DC 4 ? C DC 4 25 1 Y 1 T DG 5 ? C DG 5 26 1 Y 1 T DC 6 ? C DC 6 27 1 Y 1 T DC 7 ? C DC 7 28 1 Y 1 T DC 8 ? C DC 8 29 1 Y 1 T DC 9 ? C DC 9 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TYR N N N N 461 TYR CA C N S 462 TYR C C N N 463 TYR O O N N 464 TYR CB C N N 465 TYR CG C Y N 466 TYR CD1 C Y N 467 TYR CD2 C Y N 468 TYR CE1 C Y N 469 TYR CE2 C Y N 470 TYR CZ C Y N 471 TYR OH O N N 472 TYR OXT O N N 473 TYR H H N N 474 TYR H2 H N N 475 TYR HA H N N 476 TYR HB2 H N N 477 TYR HB3 H N N 478 TYR HD1 H N N 479 TYR HD2 H N N 480 TYR HE1 H N N 481 TYR HE2 H N N 482 TYR HH H N N 483 TYR HXT H N N 484 VAL N N N N 485 VAL CA C N S 486 VAL C C N N 487 VAL O O N N 488 VAL CB C N N 489 VAL CG1 C N N 490 VAL CG2 C N N 491 VAL OXT O N N 492 VAL H H N N 493 VAL H2 H N N 494 VAL HA H N N 495 VAL HB H N N 496 VAL HG11 H N N 497 VAL HG12 H N N 498 VAL HG13 H N N 499 VAL HG21 H N N 500 VAL HG22 H N N 501 VAL HG23 H N N 502 VAL HXT H N N 503 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TYR N CA sing N N 453 TYR N H sing N N 454 TYR N H2 sing N N 455 TYR CA C sing N N 456 TYR CA CB sing N N 457 TYR CA HA sing N N 458 TYR C O doub N N 459 TYR C OXT sing N N 460 TYR CB CG sing N N 461 TYR CB HB2 sing N N 462 TYR CB HB3 sing N N 463 TYR CG CD1 doub Y N 464 TYR CG CD2 sing Y N 465 TYR CD1 CE1 sing Y N 466 TYR CD1 HD1 sing N N 467 TYR CD2 CE2 doub Y N 468 TYR CD2 HD2 sing N N 469 TYR CE1 CZ doub Y N 470 TYR CE1 HE1 sing N N 471 TYR CE2 CZ sing Y N 472 TYR CE2 HE2 sing N N 473 TYR CZ OH sing N N 474 TYR OH HH sing N N 475 TYR OXT HXT sing N N 476 VAL N CA sing N N 477 VAL N H sing N N 478 VAL N H2 sing N N 479 VAL CA C sing N N 480 VAL CA CB sing N N 481 VAL CA HA sing N N 482 VAL C O doub N N 483 VAL C OXT sing N N 484 VAL CB CG1 sing N N 485 VAL CB CG2 sing N N 486 VAL CB HB sing N N 487 VAL CG1 HG11 sing N N 488 VAL CG1 HG12 sing N N 489 VAL CG1 HG13 sing N N 490 VAL CG2 HG21 sing N N 491 VAL CG2 HG22 sing N N 492 VAL CG2 HG23 sing N N 493 VAL OXT HXT sing N N 494 # _ndb_struct_conf_na.entry_id 4HYK _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 1 1_555 C DC 17 1_555 -0.395 -0.462 0.079 -4.251 -8.028 -8.984 1 P_DG1:DC17_T P 1 ? T 17 ? 19 1 1 B DG 2 1_555 C DC 16 1_555 0.427 0.047 1.174 18.308 -1.370 6.238 2 P_DG2:DC16_T P 2 ? T 16 ? 19 1 1 B DG 3 1_555 C DC 15 1_555 0.153 -0.040 0.010 6.058 -17.893 -0.355 3 P_DG3:DC15_T P 3 ? T 15 ? 19 1 1 B DA 4 1_555 C DT 14 1_555 0.443 0.282 -0.319 -7.824 -17.162 3.744 4 P_DA4:DT14_T P 4 ? T 14 ? ? ? 1 B DA 5 1_555 C DT 13 1_555 -0.592 -0.056 -0.064 4.939 -13.066 -1.112 5 P_DA5:DT13_T P 5 ? T 13 ? 20 1 1 B DG 6 1_555 C DC 12 1_555 0.631 0.128 0.137 7.273 -12.946 -0.355 6 P_DG6:DC12_T P 6 ? T 12 ? 19 1 1 B DC 7 1_555 C DG 11 1_555 0.020 0.029 -0.334 0.129 -15.756 -4.626 7 P_DC7:DG11_T P 7 ? T 11 ? 19 1 1 B DC 8 1_555 C DG 10 1_555 0.299 -0.315 0.152 -8.133 -5.026 1.981 8 P_DC8:DG10_T P 8 ? T 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 1 1_555 C DC 17 1_555 B DG 2 1_555 C DC 16 1_555 1.611 -0.073 2.721 -3.584 -3.084 36.892 0.217 -2.912 2.556 -4.848 5.634 37.183 1 PP_DG1DG2:DC16DC17_TT P 1 ? T 17 ? P 2 ? T 16 ? 1 B DG 2 1_555 C DC 16 1_555 B DG 3 1_555 C DC 15 1_555 -1.438 0.261 3.521 3.131 7.999 35.540 -0.764 2.757 3.365 12.873 -5.039 36.530 2 PP_DG2DG3:DC15DC16_TT P 2 ? T 16 ? P 3 ? T 15 ? 1 B DG 3 1_555 C DC 15 1_555 B DA 4 1_555 C DT 14 1_555 -0.121 -0.355 3.354 1.419 2.731 39.729 -0.843 0.345 3.317 4.012 -2.085 39.843 3 PP_DG3DA4:DT14DC15_TT P 3 ? T 15 ? P 4 ? T 14 ? 1 B DA 4 1_555 C DT 14 1_555 B DA 5 1_555 C DT 13 1_555 -0.614 -0.155 2.654 -2.646 6.202 29.738 -1.303 0.737 2.612 11.893 5.073 30.476 4 PP_DA4DA5:DT13DT14_TT P 4 ? T 14 ? P 5 ? T 13 ? 1 B DA 5 1_555 C DT 13 1_555 B DG 6 1_555 C DC 12 1_555 -0.217 -0.130 3.382 -6.678 3.257 37.866 -0.615 -0.529 3.349 4.961 10.171 38.562 5 PP_DA5DG6:DC12DT13_TT P 5 ? T 13 ? P 6 ? T 12 ? 1 B DG 6 1_555 C DC 12 1_555 B DC 7 1_555 C DG 11 1_555 -0.147 -0.153 3.360 1.623 0.763 33.654 -0.391 0.524 3.345 1.316 -2.801 33.700 6 PP_DG6DC7:DG11DC12_TT P 6 ? T 12 ? P 7 ? T 11 ? 1 B DC 7 1_555 C DG 11 1_555 B DC 8 1_555 C DG 10 1_555 -0.485 -0.222 3.461 -3.649 15.678 39.681 -1.969 0.279 3.188 22.030 5.127 42.700 7 PP_DC7DC8:DG10DG11_TT P 7 ? T 11 ? P 8 ? T 10 ? # _atom_sites.entry_id 4HYK _atom_sites.fract_transf_matrix[1][1] 0.008154 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.008154 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014301 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_